Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 0.0e+00 1258.8 623 100.0
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 0.0e+00 1157.5 624 92.9
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 7.2e-278 960.3 630 76.2
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 6.1e-277 957.2 625 76.8
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 2.6e-275 951.8 624 75.6
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 3.4e-275 951.4 624 75.8
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 8.3e-274 946.8 624 75.3
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.4e-268 929.5 625 73.9
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 5.2e-268 927.5 628 74.5
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 5.8e-267 924.1 628 74.7
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 3.7e-266 921.4 626 74.6
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 3.2e-265 918.3 626 74.4
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 4.2e-233 811.6 627 65.9
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 3.9e-231 805.1 628 65.4
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 9.6e-230 800.4 628 65.1
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 2.8e-229 798.9 634 64.8
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 6.9e-228 794.3 626 64.9
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 2.4e-225 785.8 628 63.7
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 1.8e-223 779.6 628 62.9
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 3.0e-223 778.9 629 63.8
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 9.6e-222 773.9 628 63.1
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.3e-221 773.5 629 62.6
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 3.1e-220 768.8 628 63.2
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 3.4e-219 765.4 628 61.8
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 3.4e-219 765.4 626 62.9
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 4.3e-214 748.4 608 63.0
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.1e-212 743.8 637 61.2
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 1.5e-211 740.0 630 60.8
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 3.4e-211 738.8 631 61.5
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.0e-210 737.3 629 60.3
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 1.0e-210 737.3 634 61.0
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 2.2e-210 736.1 629 61.7
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 2.1e-208 729.6 630 60.6
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 2.7e-208 729.2 634 60.6
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 7.9e-208 727.6 634 60.4
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 5.1e-207 724.9 630 60.3
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 1.1e-206 723.8 629 60.3
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 1.1e-206 723.8 633 59.4
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.5e-206 722.6 628 60.0
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.3e-205 720.3 628 59.9
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 2.8e-205 719.2 629 58.7
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 6.3e-205 718.0 630 60.2
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 4.5e-203 711.8 666 56.3
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 2.2e-202 709.5 628 59.1
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 3.8e-202 708.8 630 58.3
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 3.8e-202 708.8 631 58.2
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 5.0e-202 708.4 630 59.0
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 1.9e-201 706.4 630 58.9
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 9.4e-201 704.1 627 58.2
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 3.6e-200 702.2 626 58.0
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 3.6e-200 702.2 627 58.1
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 7.9e-200 701.0 632 58.1
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 3.0e-199 699.1 628 59.9
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 3.9e-199 698.7 628 58.0
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 3.3e-198 695.7 629 58.7
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 4.3e-198 695.3 696 54.5
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 6.3e-197 691.4 626 57.3
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.1e-196 690.6 576 62.2
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 3.1e-196 689.1 640 57.5
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 2.0e-195 686.4 633 57.2
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 1.3e-194 683.7 491 71.9
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 1.7e-194 683.3 632 57.1
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 1.7e-194 683.3 633 57.2
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 2.2e-194 682.9 633 57.2
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 2.9e-194 682.6 633 57.0
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.8e-194 682.2 627 57.1
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 5.0e-194 681.8 690 53.8
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 1.2e-192 677.2 627 56.0
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 7.9e-192 674.5 533 63.0
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.0e-191 674.1 645 55.3
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.8e-191 673.3 640 56.7
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.8e-191 673.3 628 56.4
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 1.8e-191 673.3 627 55.8
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 3.9e-191 672.2 627 55.7
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 2.6e-190 669.5 628 57.0
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 5.7e-190 668.3 629 57.4
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 2.2e-189 666.4 628 56.2
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 1.4e-188 663.7 624 57.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 9.1e-188 661.0 628 55.7
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 3.5e-187 659.1 628 56.2
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 5.9e-187 658.3 627 54.1
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 7.2e-185 651.4 626 54.0
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 1.8e-183 646.7 628 53.7
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 4.0e-183 645.6 628 55.3
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 4.4e-182 642.1 627 53.7
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 2.7e-179 632.9 625 53.1
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 8.5e-178 627.9 588 56.6
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.2e-176 624.0 665 52.6
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 8.0e-176 621.3 628 52.9
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 3.0e-175 619.4 629 53.3
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 7.5e-174 614.8 667 51.3
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 2.2e-173 613.2 628 51.8
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 8.3e-173 611.3 627 52.6
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 1.8e-172 610.1 640 51.2
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 4.1e-172 609.0 629 53.3
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 2.0e-171 606.7 533 59.7
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 1.6e-160 570.5 628 51.0
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 8.9e-159 564.7 627 50.1
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.1e-152 543.5 642 46.4
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 2.1e-152 543.5 642 46.4
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.0e-151 541.2 638 46.6
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 4.4e-150 535.8 627 49.1
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 8.3e-149 531.6 627 49.1
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 6.8e-143 511.9 622 46.9
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.1e-140 504.6 604 47.4
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.8e-136 490.0 639 45.7
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 6.6e-130 468.8 654 41.6
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 1.4e-127 461.1 516 49.2
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 1.4e-127 461.1 402 57.5
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.0e-126 457.2 383 59.3
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 4.2e-124 449.5 636 38.8
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.8e-109 399.8 403 54.3
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 9.3e-108 395.2 579 40.4
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 3.5e-107 393.3 495 44.4
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 2.5e-105 387.1 406 52.0
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 7.7e-78 295.8 220 68.2
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 2.2e-72 277.7 775 28.3
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 3.2e-68 263.8 676 30.6
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.0e-66 258.8 630 31.1
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 9.8e-57 225.7 269 46.8
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 5.9e-54 216.5 243 47.3
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 2.8e-51 207.6 390 33.6
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 4.4e-49 200.3 127 75.6
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 5.7e-49 199.9 135 75.6
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.0e-42 179.1 175 56.0
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 5.6e-36 156.8 531 27.3
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 2.0e-33 148.3 94 72.3
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 4.4e-33 147.1 98 70.4
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 2.5e-28 131.3 103 65.0
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 1.5e-25 122.1 151 46.4
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.9e-24 117.9 146 47.3
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 3.9e-21 107.5 173 38.7
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.5e-17 95.5 119 45.4
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 7.6e-17 93.2 81 67.9
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.2e-14 85.9 132 38.6
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 1.2e-14 85.9 74 54.1
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 2.1e-14 85.1 95 49.5
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 3.9e-13 80.9 54 68.5
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 2.5e-12 78.2 136 38.2
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 5.6e-12 77.0 55 76.4
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 6.2e-11 73.6 66 54.5
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 3.1e-10 71.2 52 75.0
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 1.2e-09 69.3 69 52.2
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.2e-09 69.3 47 66.0
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 3.4e-09 67.8 84 46.4
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 9.9e-09 66.2 43 62.8
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 4.2e-07 60.8 51 58.8
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 2.7e-06 58.2 108 34.3


User provided reference genes

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