Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 2.2e-48 195.3 96 100.0
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 1.4e-39 166.0 86 95.3
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 4.7e-19 97.8 58 87.9
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 1.4e-18 96.3 58 86.2
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.2e-16 89.0 58 84.5
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 6.4e-16 87.4 58 77.6
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 5.4e-15 84.3 58 77.6
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 7.1e-15 84.0 57 77.2
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 4.6e-14 81.3 58 67.2
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 6.0e-14 80.9 57 71.9
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 6.0e-14 80.9 58 74.1
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 6.0e-14 80.9 58 70.7
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 1.0e-13 80.1 58 70.7
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 1.3e-13 79.7 58 70.7
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 1.7e-13 79.3 58 69.0
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 1.7e-13 79.3 58 69.0
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 1.7e-13 79.3 58 70.7
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 2.3e-13 79.0 57 71.9
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 3.0e-13 78.6 57 68.4
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 3.9e-13 78.2 58 65.5
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 3.9e-13 78.2 58 67.2
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 5.1e-13 77.8 57 70.2
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 5.1e-13 77.8 58 69.0
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 6.6e-13 77.4 58 67.2
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 6.6e-13 77.4 58 70.7
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 1.1e-12 76.6 58 65.5
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 1.1e-12 76.6 58 65.5
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 1.5e-12 76.3 58 70.7
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 1.5e-12 76.3 57 66.7
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 1.9e-12 75.9 58 67.2
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 1.9e-12 75.9 58 74.1
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 2.5e-12 75.5 57 68.4
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 2.5e-12 75.5 58 69.0
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 2.5e-12 75.5 58 65.5
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 3.3e-12 75.1 57 66.7
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 3.3e-12 75.1 58 65.5
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 3.3e-12 75.1 58 67.2
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 5.6e-12 74.3 58 65.5
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 9.6e-12 73.6 58 67.2
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 9.6e-12 73.6 58 65.5
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 1.2e-11 73.2 58 65.5
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 1.6e-11 72.8 58 69.0
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 1.6e-11 72.8 58 67.2
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.6e-11 72.8 58 67.2
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.6e-11 72.8 58 67.2
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.6e-11 72.8 58 67.2
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 1.6e-11 72.8 58 69.0
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 1.6e-11 72.8 58 63.8
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 1.6e-11 72.8 58 65.5
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 2.8e-11 72.0 58 65.5
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 2.8e-11 72.0 58 65.5
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 3.6e-11 71.6 58 67.2
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 3.6e-11 71.6 58 67.2
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 8.1e-11 70.5 58 62.1
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 1.1e-10 70.1 58 65.5
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 1.1e-10 70.1 58 65.5
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.4e-10 69.7 58 65.5
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 1.8e-10 69.3 58 60.3
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 1.8e-10 69.3 57 66.7
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 2.4e-10 68.9 58 60.3
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 3.1e-10 68.6 58 60.3
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 3.1e-10 68.6 58 60.3
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 5.2e-10 67.8 58 62.1
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 6.8e-10 67.4 58 62.1
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 6.8e-10 67.4 61 55.7
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 1.5e-09 66.2 58 62.1
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 2.0e-09 65.9 58 62.1
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 7.6e-09 63.9 58 58.6
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 7.6e-09 63.9 58 60.3
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 7.6e-09 63.9 58 60.3
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 7.6e-09 63.9 58 60.3
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 1.3e-08 63.2 58 58.6
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.7e-08 62.8 62 54.8
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 1.7e-08 62.8 62 54.8
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 1.7e-08 62.8 58 60.3
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 2.2e-08 62.4 62 54.8
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 2.9e-08 62.0 62 53.2
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 4.9e-08 61.2 62 53.2
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 4.9e-08 61.2 62 53.2
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 4.9e-08 61.2 62 53.2
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 4.9e-08 61.2 57 50.9
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 6.4e-08 60.8 62 53.2
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 6.4e-08 60.8 62 53.2
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 6.4e-08 60.8 62 53.2
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 6.4e-08 60.8 62 53.2
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 6.4e-08 60.8 62 53.2
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 8.4e-08 60.5 62 51.6
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.1e-07 60.1 59 54.2
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 1.4e-07 59.7 62 53.2
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 3.2e-07 58.5 59 45.8
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 9.3e-07 57.0 58 50.0
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 1.2e-06 56.6 48 52.1
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 1.2e-06 56.6 58 55.2
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 1.6e-06 56.2 58 48.3
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 6.0e-06 54.3 61 42.6
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 7.8e-06 53.9 60 50.0


User provided reference genes

Program Settings