Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P837T11 Lonicera japonica HOM05D003379 ORTHO05D003862 3.4e-95 351.7 178 100.0
Dinv19304 Davidia involucrata HOM05D003379 ORTHO05D003862 1.5e-39 166.8 168 57.1
Dinv01473 Davidia involucrata HOM05D003379 ORTHO05D003862 1.2e-36 157.1 168 54.8
CSS0045312 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.3e-35 153.7 168 51.2
CSS0018885 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 1.5e-34 150.2 165 50.9
Actinidia30590 Actinidia chinensis HOM05D003379 ORTHO05D003862 1.5e-31 140.2 168 49.4
Haze_12496 Corylus avellana HOM05D003379 ORTHO05D003862 1.5e-31 140.2 164 50.6
Actinidia22119 Actinidia chinensis HOM05D003379 ORTHO05D003862 2.6e-31 139.4 172 50.6
Cfa009444 Carpinus fangiana HOM05D003379 ORTHO05D003862 2.6e-31 139.4 163 50.3
Rhsim12G0017700 Rhododendron simsii HOM05D003379 ORTHO05D003862 4.5e-31 138.7 163 51.5
TAR475G0001 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.4e-29 133.7 169 49.7
TAR374G0325 Trochodendron aralioides HOM05D003379 ORTHO05D003862 1.6e-28 130.2 172 49.4
Atru.chr12.1405 Acer truncatum HOM05D003379 ORTHO05D003862 6.1e-28 128.3 167 46.7
CiPaw.06G109000 Carya illinoinensis HOM05D003379 ORTHO05D003862 7.9e-28 127.9 163 48.5
QL03p049546 Quercus lobata HOM05D003379 ORTHO05D003862 4.3e-26 122.1 165 47.9
Ciclev10005064m.g Citrus clementina HOM05D003379 ORTHO05D003862 1.7e-25 120.2 172 44.2
vmacro01023 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 1.7e-25 120.2 122 56.6
Hma1.2p1_0787F.1_g217850 Hydrangea macrophylla HOM05D003379 ORTHO05D003862 2.8e-25 119.4 168 46.4
Haze_14949 Corylus avellana HOM05D003379 ORTHO05D003862 4.8e-25 118.6 171 45.0
Manes.11G076800 Manihot esculenta HOM05D003379 ORTHO05D003862 6.9e-24 114.8 175 44.6
Prupe.1G216200 Prunus persica HOM05D003379 ORTHO05D003862 9.1e-24 114.4 169 44.4
Sabra03G0118600 Salix brachista HOM05D003379 ORTHO05D003862 1.2e-23 114.0 169 48.5
MBI07_g41898_MAGBIO Magnolia biondii HOM05D003379 ORTHO05D003862 2.6e-23 112.8 171 41.5
QL02p069539 Quercus lobata HOM05D003379 ORTHO05D003862 4.5e-23 112.1 165 46.7
Cfa007165 Carpinus fangiana HOM05D003379 ORTHO05D003862 5.9e-23 111.7 168 43.5
FAN07G0868 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.8e-22 109.0 161 44.7
PGR142G1656 Punica granatum HOM05D003379 ORTHO05D003862 5.0e-22 108.6 164 42.7
RcHm_v2.0_Chr4g0428951 Rosa chinensis HOM05D003379 ORTHO05D003862 5.0e-22 108.6 166 44.0
COL.COLO4_21771 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.1e-21 107.5 168 42.9
Duzib132G1102 Durio zibethinus HOM05D003379 ORTHO05D003862 1.9e-21 106.7 169 42.6
Potri.003G163100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.5e-21 106.3 170 45.9
MELO3C014781.2 Cucumis melo HOM05D003379 ORTHO05D003862 5.5e-21 105.1 168 42.3
THA.LOC104825281 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 5.5e-21 105.1 192 37.0
vmacro18379 Vaccinium macrocarpon HOM05D003379 ORTHO05D003862 9.4e-21 104.4 166 40.4
Sc03g0005220 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.2e-20 104.0 161 40.4
FAN17G1075 Fragaria x ananassa HOM05D003379 ORTHO05D003862 1.6e-20 103.6 159 43.4
Dinv25618 Davidia involucrata HOM05D003379 ORTHO05D003862 2.1e-20 103.2 168 41.1
EL10Ac6g13403 Beta vulgaris HOM05D003379 ORTHO05D003862 4.7e-20 102.1 174 37.4
ClCG05G012630 Citrullus lanatus HOM05D003379 ORTHO05D003862 4.7e-20 102.1 168 41.1
Manes.08G101800 Manihot esculenta HOM05D003379 ORTHO05D003862 4.7e-20 102.1 171 44.4
Lj7A617T72 Lonicera japonica HOM05D003379 ORTHO05D003862 7.9e-20 101.3 161 41.0
Eucgr.I02446 Eucalyptus grandis HOM05D003379 ORTHO05D003862 1.0e-19 100.9 169 40.2
Lalb_Chr22g0359971 Lupinus albus HOM05D003379 ORTHO05D003862 1.0e-19 100.9 169 37.9
Glyma.19G103400 Glycine max HOM05D003379 ORTHO05D003862 1.4e-19 100.5 173 37.0
GSVIVG01001080001 Vitis vinifera HOM05D003379 ORTHO05D003862 1.4e-19 100.5 169 41.4
CsaV3_3G027780 Cucumis sativus L. HOM05D003379 ORTHO05D003862 2.3e-19 99.8 167 41.3
Rhsim08G0039200 Rhododendron simsii HOM05D003379 ORTHO05D003862 2.3e-19 99.8 168 42.3
FvH4_4g22730 Fragaria vesca HOM05D003379 ORTHO05D003862 3.0e-19 99.4 161 42.9
FAN12G1414 Fragaria x ananassa HOM05D003379 ORTHO05D003862 3.0e-19 99.4 161 42.9
CiPaw.04G001500 Carya illinoinensis HOM05D003379 ORTHO05D003862 5.1e-19 98.6 160 44.4
Duzib187G1855 Durio zibethinus HOM05D003379 ORTHO05D003862 5.1e-19 98.6 181 39.8
A10p24890 Brassica napus HOM05D003379 ORTHO05D003862 6.7e-19 98.2 158 42.4
Gohir.D02G175200 Gossypium hirsutum HOM05D003379 ORTHO05D003862 6.7e-19 98.2 167 40.7
Peaxi162Scf00171g00621 Petunia axillaris HOM05D003379 ORTHO05D003862 6.7e-19 98.2 169 39.1
TWI75G1860 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 6.7e-19 98.2 168 41.1
Actinidia36245 Actinidia chinensis HOM05D003379 ORTHO05D003862 8.8e-19 97.8 170 41.8
DCAR_002970 Daucus carota HOM05D003379 ORTHO05D003862 8.8e-19 97.8 167 40.7
BcaC04g19123 Brassica carinata HOM05D003379 ORTHO05D003862 1.1e-18 97.4 160 41.9
BraA10t44552Z Brassica rapa HOM05D003379 ORTHO05D003862 1.1e-18 97.4 158 41.8
FAN09G0861 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-18 96.7 165 39.4
FAN14G1380 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.0e-18 96.7 165 39.4
FAN05G5138 Fragaria x ananassa HOM05D003379 ORTHO05D003862 2.6e-18 96.3 165 38.8
MD09G1002700 Malus domestica HOM05D003379 ORTHO05D003862 2.6e-18 96.3 162 39.5
THA.LOC104825464 Tarenaya hassleriana HOM05D003379 ORTHO05D003862 2.6e-18 96.3 187 36.4
AUR62017428 Chenopodium quinoa HOM05D003379 ORTHO05D003862 4.4e-18 95.5 170 37.6
Sed0002814 Sechium edule HOM05D003379 ORTHO05D003862 4.4e-18 95.5 170 37.6
AUR62037825 Chenopodium quinoa HOM05D003379 ORTHO05D003862 5.7e-18 95.1 167 38.3
Gohir.A07G232700 Gossypium hirsutum HOM05D003379 ORTHO05D003862 5.7e-18 95.1 178 37.1
Ah.03g136390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 7.4e-18 94.7 173 39.3
AUR62014693 Chenopodium quinoa HOM05D003379 ORTHO05D003862 7.4e-18 94.7 168 39.9
Gohir.D07G239900 Gossypium hirsutum HOM05D003379 ORTHO05D003862 7.4e-18 94.7 178 37.1
Gorai.005G196800 Gossypium raimondii HOM05D003379 ORTHO05D003862 7.4e-18 94.7 169 39.6
FvH4_6g54290 Fragaria vesca HOM05D003379 ORTHO05D003862 9.7e-18 94.4 165 38.8
C09p63750 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-17 94.0 160 41.2
AUR62012502 Chenopodium quinoa HOM05D003379 ORTHO05D003862 1.3e-17 94.0 167 37.7
Lalb_Chr14g0364121 Lupinus albus HOM05D003379 ORTHO05D003862 1.3e-17 94.0 179 36.3
Aa31LG3G14350 Aethionema arabicum HOM05D003379 ORTHO05D003862 1.7e-17 93.6 141 43.3
Phvul.001G084300 Phaseolus vulgaris HOM05D003379 ORTHO05D003862 1.7e-17 93.6 172 37.2
Gorai.001G276100 Gossypium raimondii HOM05D003379 ORTHO05D003862 2.2e-17 93.2 178 38.2
CARHR200130 Cardamine hirsuta HOM05D003379 ORTHO05D003862 2.8e-17 92.8 165 42.4
Thhalv10013755m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 2.8e-17 92.8 151 44.4
Potri.002G238100 Populus trichocarpa HOM05D003379 ORTHO05D003862 2.8e-17 92.8 171 39.8
VMungo1383G3656 Vigna mungo HOM05D003379 ORTHO05D003862 2.8e-17 92.8 172 37.8
Cpa.g.sc70.68 Carica papaya HOM05D003379 ORTHO05D003862 3.7e-17 92.4 196 35.7
Glyma.16G047900 Glycine max HOM05D003379 ORTHO05D003862 3.7e-17 92.4 173 37.0
PSO478G4908 Papaver somniferum HOM05D003379 ORTHO05D003862 3.7e-17 92.4 169 37.3
TWI32G0366 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 3.7e-17 92.4 167 40.7
PSO017G0829 Papaver somniferum HOM05D003379 ORTHO05D003862 4.8e-17 92.0 170 40.6
MD17G1006900 Malus domestica HOM05D003379 ORTHO05D003862 6.3e-17 91.7 162 38.9
Sc17g0006750 Simmondsia chinensis HOM05D003379 ORTHO05D003862 1.4e-16 90.5 163 38.0
Prupe.3G313500 Prunus persica HOM05D003379 ORTHO05D003862 1.8e-16 90.1 172 39.0
Sabra02G0181500 Salix brachista HOM05D003379 ORTHO05D003862 2.4e-16 89.7 171 39.2
SalBow6G5409 Salvia bowleyana HOM05D003379 ORTHO05D003862 2.4e-16 89.7 161 38.5
Thecc.02G193300 Theobroma cacao HOM05D003379 ORTHO05D003862 2.4e-16 89.7 169 40.2
Ca_08145_v3 Cicer arietinum L. HOM05D003379 ORTHO05D003862 5.3e-16 88.6 148 37.2
Nn4g22138 Nelumbo nucifera HOM05D003379 ORTHO05D003862 6.9e-16 88.2 173 37.0
AL6G23930 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 9.1e-16 87.8 140 44.3
Sed0021165 Sechium edule HOM05D003379 ORTHO05D003862 9.1e-16 87.8 170 37.1
Migut.E00693 Erythranthe guttata HOM05D003379 ORTHO05D003862 1.2e-15 87.4 169 37.9
Gohir.A03G152100 Gossypium hirsutum HOM05D003379 ORTHO05D003862 1.5e-15 87.0 162 40.1
HanXRQChr12g0384731 Helianthus annuus HOM05D003379 ORTHO05D003862 1.5e-15 87.0 180 38.9
MSTRG.2062 Avicennia marina HOM05D003379 ORTHO05D003862 4.5e-15 85.5 164 36.0
EL10Ac8g20553 Beta vulgaris HOM05D003379 ORTHO05D003862 4.5e-15 85.5 160 37.5
CDE05G1535 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 4.5e-15 85.5 181 36.5
Sp6g30680 Schrenkiella parvula HOM05D003379 ORTHO05D003862 4.5e-15 85.5 138 42.8
Atru.chr6.2693 Acer truncatum HOM05D003379 ORTHO05D003862 1.0e-14 84.3 160 38.8
Carub.0006s1148 Capsella rubella HOM05D003379 ORTHO05D003862 1.0e-14 84.3 140 41.4
AT5G13310 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.3e-14 84.0 140 42.1
Medtr7g084070 Medicago truncatula HOM05D003379 ORTHO05D003862 1.3e-14 84.0 147 36.7
Potri.014G143800 Populus trichocarpa HOM05D003379 ORTHO05D003862 1.3e-14 84.0 174 38.5
COL.COLO4_13374 Corchorus olitorius HOM05D003379 ORTHO05D003862 1.7e-14 83.6 172 36.6
Aqoxy6G00186 Aquilegia oxysepala HOM05D003379 ORTHO05D003862 2.2e-14 83.2 166 37.3
CSS0041611 Camellia sinensis var. sinensis HOM05D003379 ORTHO05D003862 2.2e-14 83.2 134 44.0
MD13G1129900 Malus domestica HOM05D003379 ORTHO05D003862 2.9e-14 82.8 158 38.0
Thecc.04G047800 Theobroma cacao HOM05D003379 ORTHO05D003862 2.9e-14 82.8 182 37.9
Duzib147G0361 Durio zibethinus HOM05D003379 ORTHO05D003862 3.8e-14 82.4 174 35.6
CANSAT64G2275 Cannabis sativa HOM05D003379 ORTHO05D003862 5.0e-14 82.0 144 40.3
Ciclev10015333m.g Citrus clementina HOM05D003379 ORTHO05D003862 5.0e-14 82.0 170 39.4
Lj1g0011786 Lotus japonicus HOM05D003379 ORTHO05D003862 6.5e-14 81.6 156 39.7
CDE05G0540 Ceratophyllum demersum HOM05D003379 ORTHO05D003862 8.5e-14 81.3 160 38.1
arahy.Tifrunner.gnm1.ann1.JRYW6U Arachis hypogaea HOM05D003379 ORTHO05D003862 1.9e-13 80.1 163 35.6
Hund23589 Selenicereus undatus HOM05D003379 ORTHO05D003862 1.9e-13 80.1 176 35.8
PGSC0003DMG400004243 Solanum tuberosum HOM05D003379 ORTHO05D003862 2.5e-13 79.7 146 38.4
ATR0582G197 Amborella trichopoda HOM05D003379 ORTHO05D003862 4.2e-13 79.0 181 33.1
Cc07_g01280 Coffea canephora HOM05D003379 ORTHO05D003862 7.2e-13 78.2 201 32.3
Hund04187 Selenicereus undatus HOM05D003379 ORTHO05D003862 7.2e-13 78.2 194 33.0
Sp6g30030 Schrenkiella parvula HOM05D003379 ORTHO05D003862 1.2e-12 77.4 167 35.9
SGA_v2.0_scaffold306G48013 Striga asiatica HOM05D003379 ORTHO05D003862 2.1e-12 76.6 161 37.3
Nitab4.5_0002116g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 2.7e-12 76.3 154 39.0
TWI36G1473 Tripterygium wilfordii HOM05D003379 ORTHO05D003862 2.7e-12 76.3 168 34.5
HPP92_006450 Vanilla planifolia HOM05D003379 ORTHO05D003862 2.7e-12 76.3 159 34.6
Nitab4.5_0005424g0010 Nicotiana tabacum HOM05D003379 ORTHO05D003862 3.6e-12 75.9 167 36.5
HPP92_027984 Vanilla planifolia HOM05D003379 ORTHO05D003862 6.1e-12 75.1 159 34.6
Ah.09g236390 Amaranthus hybridus HOM05D003379 ORTHO05D003862 1.0e-11 74.3 143 34.3
Lsat_1_v5_gn_4_1521 Lactuca sativa HOM05D003379 ORTHO05D003862 1.0e-11 74.3 153 36.6
Sopen04g017060 Solanum pennellii HOM05D003379 ORTHO05D003862 2.3e-11 73.2 142 37.3
Carub.0006s1216 Capsella rubella HOM05D003379 ORTHO05D003862 3.0e-11 72.8 181 35.4
CARHR199420 Cardamine hirsuta HOM05D003379 ORTHO05D003862 3.0e-11 72.8 162 35.8
Solyc04g024520.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 5.2e-11 72.0 168 34.5
AL6G24630 Arabidopsis lyrata HOM05D003379 ORTHO05D003862 6.7e-11 71.6 181 34.8
arahy.Tifrunner.gnm1.ann1.M1DIX9 Arachis hypogaea HOM05D003379 ORTHO05D003862 2.0e-10 70.1 158 36.7
Psat3g093320 Pisum sativum HOM05D003379 ORTHO05D003862 2.0e-10 70.1 153 34.6
A10p24430 Brassica napus HOM05D003379 ORTHO05D003862 3.3e-10 69.3 168 32.7
CAN.G7.8 Capsicum annuum HOM05D003379 ORTHO05D003862 3.3e-10 69.3 142 36.6
Thhalv10013725m.g Eutrema salsugineum HOM05D003379 ORTHO05D003862 4.4e-10 68.9 173 34.1
BolC9t59151H Brassica oleracea HOM05D003379 ORTHO05D003862 5.7e-10 68.6 168 33.9
ECA234G2936 Erigeron canadensis HOM05D003379 ORTHO05D003862 7.4e-10 68.2 156 35.9
C09p63160 Brassica napus HOM05D003379 ORTHO05D003862 1.3e-09 67.4 168 33.9
ECA246G3772 Erigeron canadensis HOM05D003379 ORTHO05D003862 1.3e-09 67.4 160 33.1
BraA10t44509Z Brassica rapa HOM05D003379 ORTHO05D003862 2.2e-09 66.6 169 32.0
Aa31LG11G15410 Aethionema arabicum HOM05D003379 ORTHO05D003862 3.7e-09 65.9 171 33.9
AT5G13970 Arabidopsis thaliana HOM05D003379 ORTHO05D003862 1.1e-08 64.3 164 33.5
Cpa.g.sc38.89 Carica papaya HOM05D003379 ORTHO05D003862 9.1e-08 61.2 100 38.0
unitig_22.g5626 Utricularia gibba HOM05D003379 ORTHO05D003862 5.9e-07 58.5 143 34.3
Sopen02g036510 Solanum pennellii HOM05D003379 ORTHO05D003862 1.0e-06 57.8 159 28.9
Manes.09G187602 Manihot esculenta HOM05D003379 ORTHO05D003862 1.3e-06 57.4 170 32.9
Zm00001eb084870 Zea mays HOM05D003379 ORTHO05D003862 1.7e-06 57.0 168 30.4
Lsat_1_v5_gn_0_41321 Lactuca sativa HOM05D003379 ORTHO05D003862 3.8e-06 55.8 160 30.6
Solyc02g091940.3 Solanum lycopersicum HOM05D003379 ORTHO05D003862 5.0e-06 55.5 159 28.3


User provided reference genes

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