Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 1.0e-96 356.7 174 100.0
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 2.7e-49 199.1 175 56.6
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 6.1e-49 198.0 175 57.1
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.5e-47 193.4 175 59.4
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.5e-47 193.4 174 57.5
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 2.0e-47 193.0 175 53.7
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 1.3e-46 190.3 174 54.0
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 1.7e-46 189.9 174 54.6
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.4e-45 186.8 171 55.0
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.4e-45 186.8 171 55.0
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.2e-44 183.7 171 53.8
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.7e-44 181.0 171 53.8
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.0e-43 180.6 175 54.3
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 2.9e-43 179.1 134 68.7
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 2.9e-43 179.1 199 52.3
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 2.9e-43 179.1 178 52.2
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 8.5e-43 177.6 184 54.9
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 1.5e-42 176.8 171 56.1
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 9.4e-42 174.1 174 54.0
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 2.1e-41 172.9 167 52.7
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 3.6e-41 172.2 175 51.4
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.8e-40 169.9 175 52.0
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 1.8e-40 169.9 174 49.4
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 4.0e-40 168.7 177 50.3
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 4.0e-40 168.7 164 52.4
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 8.8e-40 167.5 185 50.3
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.4e-39 165.2 184 48.4
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.3e-38 163.7 162 50.6
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 2.8e-38 162.5 177 50.3
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 2.8e-38 162.5 172 48.8
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.8e-37 159.8 161 51.6
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 2.2e-35 152.9 178 45.5
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 6.5e-35 151.4 170 44.1
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 1.5e-34 150.2 173 47.4
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 2.5e-34 149.4 163 47.2
Peaxi162Scf00128g00135 Petunia axillaris HOM05D002002 ORTHO05D008711 2.5e-34 149.4 171 48.5
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 9.4e-34 147.5 166 48.2
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 1.2e-33 147.1 174 48.3
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 2.1e-33 146.4 175 45.1
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 3.6e-33 145.6 177 46.3
Nitab4.5_0000007g0050 Nicotiana tabacum HOM05D002002 ORTHO05D008711 1.3e-30 137.1 171 46.8
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 2.2e-30 136.3 168 45.8
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 1.7e-27 126.7 187 41.2
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 8.6e-27 124.4 130 52.3
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.1e-26 124.0 106 56.6
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 4.2e-26 122.1 179 41.3
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 1.2e-25 120.6 258 34.1
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 1.2e-25 120.6 245 35.5
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 2.1e-25 119.8 203 36.9
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 2.1e-25 119.8 242 33.1
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 2.8e-25 119.4 193 37.8
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 1.8e-24 116.7 167 40.1
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 2.3e-24 116.3 109 55.0
TPR.G17746 Trifolium pratense HOM05D002002 ORTHO05D003658 5.2e-24 115.2 202 34.2
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.5e-23 113.6 93 53.8
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 2.6e-23 112.8 212 31.6
Lsat_1_v5_gn_8_152141 Lactuca sativa HOM05D002002 ORTHO05D008711 2.6e-23 112.8 175 36.0
Phvul.002G149900 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 7.5e-23 111.3 221 34.8
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 4.9e-22 108.6 197 35.5
Glyma.02G038900 Glycine max HOM05D002002 ORTHO05D003658 1.4e-21 107.1 227 33.0
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 3.1e-21 105.9 197 34.5
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 2.8e-17 92.8 81 53.1
Oeu009141.2 Olea europaea HOM05D002002 ORTHO05D003658 4.7e-17 92.0 89 46.1
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 1.2e-15 87.4 170 29.4
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 2.6e-15 86.3 184 29.9
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 3.7e-14 82.4 172 31.4
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 3.7e-14 82.4 172 31.4
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 3.7e-14 82.4 106 44.3
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.1e-13 80.9 79 41.8
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 3.2e-13 79.3 188 27.1
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 3.2e-13 79.3 145 33.8
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.2e-13 79.3 145 33.8
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 3.2e-13 79.3 145 33.8
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 4.1e-13 79.0 145 33.8
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 5.4e-13 78.6 84 41.7
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.4e-13 78.6 136 33.8
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 7.0e-13 78.2 174 29.3
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 7.0e-13 78.2 79 41.8
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 7.0e-13 78.2 170 30.0
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 9.2e-13 77.8 78 44.9
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.2e-12 77.4 135 29.6
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 3.5e-12 75.9 73 43.8
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 3.5e-12 75.9 142 34.5
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 7.8e-12 74.7 157 29.3
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 7.8e-12 74.7 71 46.5
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 1.0e-11 74.3 73 43.8
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 1.3e-11 73.9 71 46.5
VMungo1215G2343 Vigna mungo HOM05D000068 ORTHO05D004691 1.3e-11 73.9 88 44.3
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 3.0e-11 72.8 71 46.5
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 3.0e-11 72.8 71 43.7
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 5.0e-11 72.0 182 29.1
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 5.0e-11 72.0 76 43.4
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 5.0e-11 72.0 76 43.4
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.5e-10 70.5 71 43.7
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 2.5e-10 69.7 195 26.7
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 2.5e-10 69.7 149 30.2
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 3.3e-10 69.3 82 35.4
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 3.3e-10 69.3 127 31.5
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 4.3e-10 68.9 180 24.4
Oeu010371.1 Olea europaea HOM05D007028 ORTHO05D003658 4.3e-10 68.9 191 29.8
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 5.6e-10 68.6 71 40.8
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 7.3e-10 68.2 186 25.3
Cpa.g.sc136.48 Carica papaya HOM05D002002 ORTHO05D003658 9.5e-10 67.8 111 34.2
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 9.5e-10 67.8 115 30.4
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 9.5e-10 67.8 83 36.1
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.1e-09 66.6 71 39.4
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 2.1e-09 66.6 93 36.6
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 2.8e-09 66.2 127 31.5
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 3.6e-09 65.9 71 38.0
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 8.0e-09 64.7 113 30.1
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 1.1e-08 64.3 127 31.5
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 1.4e-08 63.9 76 34.2
Oeu043137.1 Olea europaea HOM05D007028 ORTHO05D003658 1.4e-08 63.9 79 35.4
Manes.11G063900 Manihot esculenta HOM05D007028 ORTHO05D003658 2.3e-08 63.2 73 38.4
Migut.I00721 Erythranthe guttata HOM05D007028 ORTHO05D003658 4.0e-08 62.4 162 28.4
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 4.0e-08 62.4 182 25.8
MSTRG.14910 Avicennia marina HOM05D002002 ORTHO05D003658 5.2e-08 62.0 71 35.2
ATR0749G015 Amborella trichopoda HOM05D007028 ORTHO05D003658 6.8e-08 61.6 72 37.5
FvH4_6g28900 Fragaria vesca HOM05D007028 ORTHO05D003658 6.8e-08 61.6 80 40.0
FAN02G1822 Fragaria x ananassa HOM05D007028 ORTHO05D003658 6.8e-08 61.6 80 40.0
FAN05G3224 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.9e-08 61.2 75 42.7
FAN09G0870 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.9e-08 61.2 75 42.7
FAN14G4516 Fragaria x ananassa HOM05D007028 ORTHO05D003658 8.9e-08 61.2 75 42.7
MBI04_g44678_MAGBIO Magnolia biondii HOM05D007028 ORTHO05D003658 1.2e-07 60.8 77 36.4
Actinidia25445 Actinidia chinensis HOM05D007028 ORTHO05D010012 1.5e-07 60.5 70 37.1
QL05p034297 Quercus lobata HOM05D007028 ORTHO05D003658 1.5e-07 60.5 70 40.0
Thecc.06G037900 Theobroma cacao HOM05D007028 ORTHO05D003658 2.6e-07 59.7 81 38.3
MELO3C021015.2 Cucumis melo HOM05D007028 ORTHO05D003658 3.4e-07 59.3 85 35.3
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 3.4e-07 59.3 79 31.6
Cc01_g17020 Coffea canephora HOM05D007028 ORTHO05D003658 4.4e-07 58.9 85 30.6
Cc04_g04860 Coffea canephora HOM05D007028 ORTHO05D003658 4.4e-07 58.9 69 36.2
COL.COLO4_26654 Corchorus olitorius HOM05D007028 ORTHO05D003658 4.4e-07 58.9 121 28.9
Potri.014G170000 Populus trichocarpa HOM05D002002 ORTHO05D003658 4.4e-07 58.9 56 46.4
Prupe.3G095700 Prunus persica HOM05D007028 ORTHO05D003658 4.4e-07 58.9 76 39.5
Peaxi162Scf00107g00204 Petunia axillaris HOM05D007028 ORTHO05D003658 5.8e-07 58.5 77 33.8
Sopen09g023970 Solanum pennellii HOM05D007028 ORTHO05D003658 5.8e-07 58.5 78 33.3
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 7.5e-07 58.2 75 34.7
ECA238G1648 Erigeron canadensis HOM05D007028 ORTHO05D003658 7.5e-07 58.2 68 38.2
MD17G1220000 Malus domestica HOM05D007028 ORTHO05D003658 7.5e-07 58.2 81 35.8
Phvul.005G180900 Phaseolus vulgaris HOM05D007028 ORTHO05D003658 7.5e-07 58.2 69 36.2
Solyc09g061240.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 7.5e-07 58.2 78 33.3
PGSC0003DMG400046108 Solanum tuberosum HOM05D007028 ORTHO05D003658 7.5e-07 58.2 78 33.3
Gohir.D05G121800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 9.8e-07 57.8 78 35.9
Glyma.08G282202 Glycine max HOM05D002002 ORTHO05D003658 1.3e-06 57.4 93 46.2
Ciclev10017528m.g Citrus clementina HOM05D002002 ORTHO05D003658 1.7e-06 57.0 71 36.6
Gohir.A05G120800 Gossypium hirsutum HOM05D007028 ORTHO05D003658 1.7e-06 57.0 78 35.9
Medtr5g033070 Medicago truncatula HOM05D002002 ORTHO05D003658 1.7e-06 57.0 90 36.7
Solyc03g117170.1 Solanum lycopersicum HOM05D007028 ORTHO05D003658 1.7e-06 57.0 77 33.8
Aqoxy7G01883 Aquilegia oxysepala HOM05D007028 ORTHO05D003658 2.2e-06 56.6 76 36.8
TPR.G38725 Trifolium pratense HOM05D002002 ORTHO05D003658 2.2e-06 56.6 76 36.8
Ciclev10027378m.g Citrus clementina HOM05D007028 ORTHO05D003658 2.9e-06 56.2 80 35.0
Migut.N00615 Erythranthe guttata HOM05D007028 ORTHO05D003658 2.9e-06 56.2 91 30.8
QL04p067058 Quercus lobata HOM05D002002 ORTHO05D003658 2.9e-06 56.2 158 27.2
Sopen03g036070 Solanum pennellii HOM05D007028 ORTHO05D003658 2.9e-06 56.2 105 30.5
Glyma.15G004600 Glycine max HOM05D007028 ORTHO05D003658 3.7e-06 55.8 75 34.7
Glyma.13G369200 Glycine max HOM05D007028 ORTHO05D003658 4.9e-06 55.5 70 38.6
Potri.003G179600 Populus trichocarpa HOM05D007028 ORTHO05D003658 4.9e-06 55.5 76 34.2
PGSC0003DMG402014197 Solanum tuberosum HOM05D007028 ORTHO05D003658 4.9e-06 55.5 69 37.7
arahy.Tifrunner.gnm1.ann1.SE9SAL Arachis hypogaea HOM05D007028 ORTHO05D003658 6.4e-06 55.1 149 30.2
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 6.4e-06 55.1 98 28.6
Glyma.03G253700 Glycine max HOM05D007028 ORTHO05D003658 6.4e-06 55.1 70 37.1
Ca_04572_v3 Cicer arietinum L. HOM05D002002 ORTHO05D003658 8.3e-06 54.7 67 41.8
Nitab4.5_0001454g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 8.3e-06 54.7 69 36.2
Nitab4.5_0006291g0010 Nicotiana tabacum HOM05D007028 ORTHO05D003658 8.3e-06 54.7 69 37.7


User provided reference genes

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