Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 5.1e-123 444.5 236 100.0
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 1.7e-78 296.6 239 67.4
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 1.5e-71 273.5 238 63.4
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 1.0e-67 260.8 235 59.6
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 8.8e-67 257.7 239 56.5
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 3.3e-66 255.8 236 60.2
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 4.5e-63 245.4 237 56.1
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 5.9e-63 245.0 245 57.6
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 1.2e-60 237.3 238 56.3
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 1.6e-60 236.9 235 54.9
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.7e-60 236.1 236 55.1
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.7e-60 236.1 238 55.5
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 4.0e-59 232.3 235 54.5
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.3e-57 227.3 233 53.2
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.7e-57 225.7 233 52.8
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 2.4e-56 223.0 237 51.5
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 2.4e-56 223.0 235 52.8
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 3.1e-56 222.6 235 52.8
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 3.1e-56 222.6 233 52.4
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 9.1e-56 221.1 241 52.3
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 2.0e-55 219.9 237 51.1
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 1.3e-54 217.2 222 56.8
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 1.3e-54 217.2 235 51.5
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 8.5e-54 214.5 241 51.5
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 1.9e-53 213.4 233 51.1
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 2.5e-53 213.0 232 53.4
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 2.5e-53 213.0 232 53.4
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 4.2e-53 212.2 235 54.0
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 4.2e-53 212.2 235 53.2
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 5.5e-53 211.8 235 52.3
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 1.6e-52 210.3 236 47.9
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 2.1e-52 209.9 239 53.6
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 2.1e-52 209.9 233 50.6
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 8.0e-52 208.0 223 55.2
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 1.4e-51 207.2 235 48.9
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 1.8e-51 206.8 239 51.0
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 8.8e-51 204.5 240 53.8
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 1.5e-50 203.8 236 50.0
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 2.0e-50 203.4 238 52.1
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.0e-50 203.4 236 52.1
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 5.7e-50 201.8 235 49.4
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 1.7e-49 200.3 240 49.6
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 6.3e-49 198.4 229 50.7
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 8.3e-49 198.0 241 50.2
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 1.4e-48 197.2 235 48.1
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 4.1e-48 195.7 235 51.5
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 4.1e-48 195.7 237 48.1
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 7.0e-48 194.9 238 48.3
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 3.5e-47 192.6 238 49.6
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 6.5e-46 188.3 235 47.2
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.5e-45 186.4 235 48.5
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 3.2e-45 186.0 233 46.8
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 4.2e-45 185.7 239 48.1
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 4.2e-45 185.7 235 46.4
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 4.2e-45 185.7 237 48.5
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 9.4e-45 184.5 237 48.9
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 1.2e-44 184.1 237 49.8
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 1.2e-44 184.1 228 48.2
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.2e-44 184.1 243 47.3
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 1.6e-44 183.7 238 47.5
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 2.1e-44 183.3 236 45.3
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 3.6e-44 182.6 235 49.4
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 4.7e-44 182.2 235 50.6
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 4.7e-44 182.2 241 44.8
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 6.1e-44 181.8 239 47.3
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.0e-43 181.0 241 47.3
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 1.4e-43 180.6 241 45.2
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 3.0e-43 179.5 235 48.5
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 3.0e-43 179.5 235 48.5
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 4.0e-43 179.1 233 45.5
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 5.2e-43 178.7 245 47.3
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 6.8e-43 178.3 235 48.1
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.0e-42 176.8 233 45.9
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 9.8e-42 174.5 238 47.1
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 1.3e-41 174.1 235 48.1
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 1.3e-41 174.1 235 48.1
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 1.1e-40 171.0 236 46.2
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.8e-40 170.2 233 45.1
ECA246G1613 Erigeron canadensis HOM05D003448 ORTHO05D004028 2.4e-40 169.9 137 62.8
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.4e-40 169.9 233 42.5
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 4.1e-40 169.1 232 44.4
Haze_11952 Corylus avellana HOM05D003448 ORTHO05D004028 9.1e-40 167.9 170 54.7
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 9.1e-40 167.9 233 44.2
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 9.1e-40 167.9 243 45.7
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.6e-39 167.2 233 42.5
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 5.9e-39 165.2 234 45.3
AUR62005855 Chenopodium quinoa HOM05D003448 ORTHO05D004028 7.7e-39 164.9 220 45.9
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 7.7e-39 164.9 233 42.1
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 1.3e-38 164.1 234 44.9
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 2.3e-38 163.3 227 47.6
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.8e-38 162.5 230 43.9
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 1.9e-37 160.2 225 44.9
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 3.3e-37 159.5 244 42.6
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 5.6e-37 158.7 231 42.9
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 7.2e-37 158.3 236 44.9
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 4.7e-36 155.6 229 43.2
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 1.4e-35 154.1 236 44.5
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 5.7e-34 148.7 235 43.4
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.3e-33 147.5 229 43.2
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.1e-32 142.5 231 42.4
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.6e-31 140.6 225 40.4
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.6e-31 140.6 228 39.9
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.0e-31 140.2 234 40.2
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 2.7e-31 139.8 236 41.9
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 4.6e-31 139.0 225 41.8
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 4.6e-31 139.0 187 49.2
AT2G03330 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 5.9e-31 138.7 209 41.6
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 5.9e-31 138.7 241 40.7
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 1.3e-30 137.5 171 46.8
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 5.0e-30 135.6 239 40.2
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 9.5e-29 131.3 245 40.4
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.1e-28 130.2 207 40.1
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 3.6e-28 129.4 203 40.9
C02p51340 Brassica napus HOM05D003448 ORTHO05D004028 4.7e-28 129.0 138 52.2
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 8.0e-28 128.3 198 43.9
C02p51370 Brassica napus HOM05D003448 ORTHO05D004028 1.0e-27 127.9 138 51.4
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 2.3e-27 126.7 235 39.1
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.3e-27 126.7 232 38.8
HanXRQChr12g0361861 Helianthus annuus HOM05D003448 ORTHO05D004028 4.0e-27 125.9 171 48.0
HanXRQChr12g0361791 Helianthus annuus HOM05D003448 ORTHO05D004028 1.2e-26 124.4 186 46.8
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.5e-26 124.0 239 36.8
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 1.5e-26 124.0 222 39.2
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.7e-25 120.6 168 47.6
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 4.9e-25 119.0 229 37.1
TAR629G0321 Trochodendron aralioides HOM05D003448 ORTHO05D004028 4.9e-25 119.0 110 59.1
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 6.4e-25 118.6 242 39.7
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 8.3e-25 118.2 222 39.2
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 1.1e-24 117.9 231 39.0
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 1.9e-24 117.1 224 38.4
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 4.1e-24 115.9 232 37.9
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.5e-23 112.8 227 34.4
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 3.5e-23 112.8 227 34.4
SalBow5G4342 Salvia bowleyana HOM05D003448 ORTHO05D004028 2.3e-22 110.2 141 47.5
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.3e-22 110.2 225 38.7
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 6.6e-22 108.6 234 35.5
SalBow1G1885 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.6e-22 108.6 113 54.0
Gohir.A03G102650 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.1e-21 107.8 98 57.1
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 3.3e-21 106.3 227 37.4
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 3.3e-21 106.3 132 49.2
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 3.3e-21 106.3 235 36.6
Nitab4.5_0014231g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 9.5e-21 104.8 197 39.6
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 1.6e-20 104.0 194 37.1
SEGI_11541 Sequoiadendron giganteum HOM05D000043 ORTHO05D001371 3.6e-20 102.8 155 47.1
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 1.1e-19 101.3 228 37.3
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 1.4e-19 100.9 208 37.0
Zm00001eb408540 Zea mays HOM05D003448 ORTHO05D004028 1.8e-19 100.5 224 36.2
FAN12G3596 Fragaria x ananassa HOM05D003448 ORTHO05D004028 8.9e-19 98.2 104 54.8
FAN22G1572 Fragaria x ananassa HOM05D003448 ORTHO05D004028 1.5e-18 97.4 107 54.2
COL.COLO4_27958 Corchorus olitorius HOM05D003448 ORTHO05D004028 2.6e-18 96.7 98 52.0
FAN07G2405 Fragaria x ananassa HOM05D003448 ORTHO05D004028 4.4e-18 95.9 107 53.3
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 5.8e-18 95.5 211 36.5
FAN17G1640 Fragaria x ananassa HOM05D003448 ORTHO05D004028 5.8e-18 95.5 107 53.3
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 7.5e-18 95.1 216 34.3
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 7.5e-18 95.1 145 42.8
Os12g0257500 Oryza sativa ssp. japonica HOM05D003448 ORTHO05D004028 9.8e-18 94.7 223 35.4
Nitab4.5_0000391g0100 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.2e-17 93.6 135 43.7
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 3.7e-17 92.8 236 34.3
Hma1.2p1_0261F.1_g104800 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 6.4e-17 92.0 62 72.6
SalBow8G2290 Salvia bowleyana HOM05D003448 ORTHO05D004028 6.4e-17 92.0 148 42.6
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 1.4e-16 90.9 83 54.2
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 7.1e-16 88.6 81 55.6
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 4.6e-15 85.9 216 33.3
Lalb_Chr05g0220181 Lupinus albus HOM05D003448 ORTHO05D004028 2.3e-14 83.6 241 34.4
Solyc05g012810.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 3.0e-14 83.2 163 38.7
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 6.6e-14 82.0 211 33.2
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 8.6e-14 81.6 207 34.3
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 8.6e-14 81.6 129 41.1
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 7.3e-13 78.6 217 34.6
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 1.8e-11 73.9 205 33.7
ECA233G3599 Erigeron canadensis HOM05D003448 ORTHO05D004028 2.3e-11 73.6 100 44.0
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.3e-11 73.6 118 43.2
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 5.2e-11 72.4 116 39.7
Nitab4.5_0005448g0040 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.5e-10 70.9 146 36.3
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 4.4e-10 69.3 195 33.3
MD12G1099700 Malus domestica HOM05D003448 ORTHO05D004028 5.8e-10 68.9 113 38.9
unitig_699.g19913 Utricularia gibba HOM05D003448 ORTHO05D004028 3.7e-09 66.2 134 32.1
Haze_01654 Corylus avellana HOM05D003448 ORTHO05D004028 8.4e-09 65.1 140 37.1
CANSAT64G2624 Cannabis sativa HOM05D003448 ORTHO05D004028 1.4e-08 64.3 253 31.6
TPR.G34075 Trifolium pratense HOM05D003448 ORTHO05D004028 1.9e-08 63.9 113 39.8
BcaC03g17208 Brassica carinata HOM05D003448 ORTHO05D004028 5.4e-08 62.4 85 45.9
COL.COLO4_27959 Corchorus olitorius HOM05D003448 ORTHO05D004028 9.2e-08 61.6 228 29.8
Cc00_g19080 Coffea canephora HOM05D004170 ORTHO05D005976 3.5e-07 59.7 36 75.0
PGSC0003DMG400000263 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.3e-06 57.8 119 35.3


User provided reference genes

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