Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 3.0e-99 365.2 182 100.0
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 1.1e-96 356.7 182 96.2
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.4e-80 303.1 183 77.6
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 3.1e-80 302.0 183 77.0
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 4.1e-80 301.6 183 77.0
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 4.1e-80 301.6 183 79.8
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 4.1e-80 301.6 183 77.6
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 4.1e-80 301.6 183 77.6
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 9.1e-80 300.4 183 78.1
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 1.2e-79 300.1 183 76.5
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 1.2e-79 300.1 183 76.0
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 1.6e-79 299.7 182 80.8
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.6e-79 299.7 183 77.6
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.5e-79 298.5 183 76.0
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 5.9e-79 297.7 183 76.5
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 7.7e-79 297.4 183 76.5
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 1.0e-78 297.0 183 77.0
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 1.3e-78 296.6 183 73.8
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.3e-78 296.6 183 79.2
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.2e-78 295.8 183 76.0
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 2.9e-78 295.4 183 74.3
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 8.5e-78 293.9 183 75.4
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 1.1e-77 293.5 183 76.0
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.1e-77 293.5 181 77.3
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.5e-77 292.4 183 74.3
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 4.2e-77 291.6 183 75.4
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 5.5e-77 291.2 183 74.3
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 7.2e-77 290.8 183 74.9
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 2.1e-76 289.3 183 74.3
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.7e-76 288.9 183 73.2
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 3.6e-76 288.5 182 75.8
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 3.6e-76 288.5 183 73.2
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.1e-76 287.7 183 74.9
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 6.1e-76 287.7 183 71.0
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.0e-75 287.0 183 73.8
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.0e-75 287.0 183 74.9
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 1.8e-75 286.2 183 73.2
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 2.3e-75 285.8 183 74.9
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 3.0e-75 285.4 183 73.8
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 4.0e-75 285.0 183 73.2
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 6.8e-75 284.3 183 74.3
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 1.5e-74 283.1 183 71.6
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.0e-74 282.7 183 73.8
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 2.0e-74 282.7 182 72.5
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 2.6e-74 282.3 183 73.2
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 2.6e-74 282.3 183 73.2
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 3.4e-74 282.0 183 73.2
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 3.4e-74 282.0 183 73.2
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 3.4e-74 282.0 181 72.4
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 4.4e-74 281.6 183 72.1
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 5.7e-74 281.2 182 73.1
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 7.5e-74 280.8 180 73.3
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 7.5e-74 280.8 183 73.2
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 9.8e-74 280.4 183 73.8
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 9.8e-74 280.4 181 72.4
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.3e-73 280.0 183 71.0
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 1.3e-73 280.0 183 71.6
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 1.7e-73 279.6 182 72.0
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 3.7e-73 278.5 183 71.6
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 3.7e-73 278.5 183 72.7
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.8e-73 278.1 183 72.7
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 6.3e-73 277.7 182 71.4
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 6.3e-73 277.7 180 71.7
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 8.3e-73 277.3 183 69.4
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.1e-72 276.9 183 72.1
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.8e-72 276.2 182 72.5
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.8e-72 276.2 183 66.7
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 2.4e-72 275.8 183 70.5
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.4e-72 275.8 180 71.1
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.4e-72 275.8 180 73.3
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 3.1e-72 275.4 180 72.2
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 5.4e-72 274.6 183 69.4
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 5.4e-72 274.6 183 70.5
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 5.4e-72 274.6 183 69.9
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 7.0e-72 274.2 183 69.9
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.2e-71 273.5 180 71.1
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.2e-71 273.5 180 71.1
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 1.6e-71 273.1 182 71.4
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 2.0e-71 272.7 183 69.4
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 2.0e-71 272.7 183 67.8
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 5.9e-71 271.2 183 69.9
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 1.0e-70 270.4 183 69.9
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 1.3e-70 270.0 183 68.3
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 1.7e-70 269.6 183 71.6
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 1.7e-70 269.6 179 72.1
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 1.7e-70 269.6 183 69.4
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 2.2e-70 269.2 183 69.4
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.8e-70 268.5 183 67.2
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 5.0e-70 268.1 182 70.9
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 6.5e-70 267.7 183 69.4
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 6.5e-70 267.7 183 66.7
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 8.5e-70 267.3 183 71.0
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 8.5e-70 267.3 182 71.4
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 1.5e-69 266.5 183 68.3
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 1.9e-69 266.2 183 67.8
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 1.9e-69 266.2 183 67.8
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 2.5e-69 265.8 183 71.0
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 2.5e-69 265.8 183 67.2
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 3.2e-69 265.4 183 67.2
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.2e-69 265.0 183 67.2
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 4.2e-69 265.0 183 67.2
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 9.4e-69 263.8 183 65.6
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 1.6e-68 263.1 183 67.2
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 2.1e-68 262.7 177 71.2
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 2.1e-68 262.7 183 67.8
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.1e-68 262.7 183 69.4
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 4.7e-68 261.5 183 66.7
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.0e-67 260.4 183 67.2
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 1.4e-67 260.0 183 67.8
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.8e-67 259.6 183 66.1
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.3e-67 259.2 183 68.9
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 3.0e-67 258.8 181 65.7
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 8.8e-67 257.3 182 66.5
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 9.8e-66 253.8 182 68.1
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 4.1e-64 248.4 183 64.5
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 5.4e-64 248.1 180 66.1
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 7.0e-64 247.7 177 66.1
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 1.5e-61 240.0 182 62.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 3.3e-61 238.8 144 77.1
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 6.1e-60 234.6 144 69.4
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 2.3e-59 232.6 182 59.9
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 8.9e-59 230.7 154 70.8
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 3.4e-58 228.8 143 72.7
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 1.1e-56 223.8 177 59.3
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 2.0e-55 219.5 137 75.2
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 1.0e-54 217.2 183 59.0
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 3.0e-54 215.7 144 65.3
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 1.6e-52 209.9 154 64.3
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 2.3e-51 206.1 148 64.2
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 3.2e-48 195.7 114 74.6
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 9.2e-48 194.1 181 51.4
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 6.0e-47 191.4 183 55.7
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 1.3e-41 173.7 98 75.5
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 1.2e-39 167.2 183 50.8
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.7e-38 163.3 180 46.1
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 3.6e-36 155.6 183 48.1
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 8.9e-35 151.0 182 46.7
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 7.6e-34 147.9 110 66.4
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 2.4e-32 142.9 180 41.7
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.3e-25 120.6 107 53.3
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 5.4e-24 115.2 184 37.0
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 9.3e-24 114.4 74 67.6
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 3.0e-22 109.4 85 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.5e-21 107.1 104 50.0
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.6e-20 103.6 109 49.5
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 1.6e-20 103.6 120 44.2
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 3.1e-19 99.4 64 64.1
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 9.9e-18 94.4 71 57.7
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 6.4e-17 91.7 178 37.6
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 2.3e-14 83.2 58 70.7


User provided reference genes

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