Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P680T81 Lonicera japonica HOM05D005099 ORTHO05D006087 1.5e-89 332.8 166 100.0
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 5.1e-21 105.1 66 77.3
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 8.7e-21 104.4 68 73.5
Hma1.2p1_0804F.1_g221070 Hydrangea macrophylla HOM05D005099 ORTHO05D006087 1.5e-20 103.6 67 76.1
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.3e-20 102.4 69 69.6
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 7.4e-20 101.3 67 70.1
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 7.4e-20 101.3 72 69.4
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 7.4e-20 101.3 66 74.2
COL.COLO4_13826 Corchorus olitorius HOM05D005099 ORTHO05D006087 9.7e-20 100.9 60 83.3
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 1.6e-19 100.1 67 71.6
Prupe.1G124100 Prunus persica HOM05D005099 ORTHO05D006087 1.6e-19 100.1 66 74.2
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 2.2e-19 99.8 66 74.2
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 2.8e-19 99.4 70 68.6
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 3.7e-19 99.0 69 69.6
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 6.3e-19 98.2 55 78.2
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 1.1e-18 97.4 62 79.0
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.1e-18 97.4 74 66.2
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 1.8e-18 96.7 63 76.2
TWI73G1062 Tripterygium wilfordii HOM05D005099 ORTHO05D006087 1.8e-18 96.7 73 68.5
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 2.4e-18 96.3 60 76.7
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.4e-18 96.3 74 63.5
SalBow2G2334 Salvia bowleyana HOM05D005099 ORTHO05D006087 2.4e-18 96.3 60 78.3
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 4.1e-18 95.5 68 66.2
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 4.1e-18 95.5 60 76.7
TAR365G0602 Trochodendron aralioides HOM05D005099 ORTHO05D006087 4.1e-18 95.5 63 73.0
VMungo1309G2116 Vigna mungo HOM05D005099 ORTHO05D006087 4.1e-18 95.5 74 66.2
Cpa.g.sc50.167 Carica papaya HOM05D005099 ORTHO05D006087 6.9e-18 94.7 65 72.3
RcHm_v2.0_Chr4g0423321 Rosa chinensis HOM05D005099 ORTHO05D006087 6.9e-18 94.7 60 75.0
CANSAT78G2455 Cannabis sativa HOM05D005099 ORTHO05D006087 9.0e-18 94.4 68 72.1
AUR62018071 Chenopodium quinoa HOM05D005099 ORTHO05D006087 9.0e-18 94.4 60 71.7
THA.LOC104818909 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 9.0e-18 94.4 67 71.6
Cc03_g01550 Coffea canephora HOM05D005099 ORTHO05D006087 1.2e-17 94.0 60 76.7
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.5e-17 93.6 60 73.3
MD16G1164800 Malus domestica HOM05D005099 ORTHO05D006087 1.5e-17 93.6 65 70.8
Sed0019517 Sechium edule HOM05D005099 ORTHO05D006087 1.5e-17 93.6 60 68.3
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 2.6e-17 92.8 60 73.3
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.6e-17 92.8 60 73.3
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 2.6e-17 92.8 60 73.3
Oeu053996.1 Olea europaea HOM05D005099 ORTHO05D006087 2.6e-17 92.8 60 71.7
AUR62015274 Chenopodium quinoa HOM05D005099 ORTHO05D006087 3.4e-17 92.4 60 70.0
Glyma.09G042500 Glycine max HOM05D005099 ORTHO05D006087 3.4e-17 92.4 74 63.5
MD13G1165200 Malus domestica HOM05D005099 ORTHO05D006087 3.4e-17 92.4 65 70.8
Medtr2g435810 Medicago truncatula HOM05D005099 ORTHO05D006087 3.4e-17 92.4 64 73.4
Medtr2g436150 Medicago truncatula HOM05D005099 ORTHO05D006087 3.4e-17 92.4 64 73.4
Oeu006417.1 Olea europaea HOM05D005099 ORTHO05D006087 3.4e-17 92.4 60 70.0
Sc13g0003250 Simmondsia chinensis HOM05D005099 ORTHO05D006087 3.4e-17 92.4 55 74.5
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 3.4e-17 92.4 74 64.9
Lsat_1_v5_gn_3_21720 Lactuca sativa HOM05D005099 ORTHO05D006087 4.5e-17 92.0 62 79.0
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 4.5e-17 92.0 62 71.0
Lj6g0002623 Lotus japonicus HOM05D005099 ORTHO05D006087 5.9e-17 91.7 66 68.2
Dinv44353 Davidia involucrata HOM05D005099 ORTHO05D006087 7.7e-17 91.3 78 64.1
FAN17G2615 Fragaria x ananassa HOM05D005099 ORTHO05D006087 7.7e-17 91.3 55 74.5
Gohir.A09G237600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.7e-17 91.3 63 71.4
Gohir.D09G238500 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.7e-17 91.3 63 71.4
Gorai.006G261200 Gossypium raimondii HOM05D005099 ORTHO05D006087 7.7e-17 91.3 63 71.4
Phvul.009G250300 Phaseolus vulgaris HOM05D005099 ORTHO05D006087 7.7e-17 91.3 74 63.5
MSTRG.3894 Avicennia marina HOM05D005099 ORTHO05D006087 1.3e-16 90.5 72 63.9
EL10Ac3g06640 Beta vulgaris HOM05D005099 ORTHO05D006087 1.3e-16 90.5 60 71.7
PSO407G0003 Papaver somniferum HOM05D005099 ORTHO05D006087 1.3e-16 90.5 69 66.7
Psat1g155760 Pisum sativum HOM05D005099 ORTHO05D006087 1.3e-16 90.5 64 70.3
Glyma.15G150400 Glycine max HOM05D005099 ORTHO05D006087 2.2e-16 89.7 67 67.2
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.2e-16 89.7 61 72.1
ClCG06G004980 Citrullus lanatus HOM05D005099 ORTHO05D006087 2.9e-16 89.4 56 76.8
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 2.9e-16 89.4 57 71.9
BcaC06g30713 Brassica carinata HOM05D005099 ORTHO05D006087 3.8e-16 89.0 88 60.2
CsaV3_6G023860 Cucumis sativus L. HOM05D005099 ORTHO05D006087 3.8e-16 89.0 64 68.8
Nn4g25764 Nelumbo nucifera HOM05D005099 ORTHO05D006087 3.8e-16 89.0 55 76.4
Solyc01g066440.3 Solanum lycopersicum HOM05D005099 ORTHO05D006087 5.0e-16 88.6 61 72.1
Sopen01g028090 Solanum pennellii HOM05D005099 ORTHO05D006087 5.0e-16 88.6 61 72.1
MELO3C021313.2 Cucumis melo HOM05D005099 ORTHO05D006087 6.5e-16 88.2 64 67.2
Aqoxy2G02900 Aquilegia oxysepala HOM05D005099 ORTHO05D006087 8.5e-16 87.8 66 68.2
PSO170G0513 Papaver somniferum HOM05D005099 ORTHO05D006087 1.1e-15 87.4 70 64.3
Gohir.D02G055600 Gossypium hirsutum HOM05D005099 ORTHO05D006087 1.4e-15 87.0 60 70.0
Gorai.005G061600 Gossypium raimondii HOM05D005099 ORTHO05D006087 1.4e-15 87.0 60 70.0
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 1.4e-15 87.0 65 66.2
PGR004G0666 Punica granatum HOM05D005099 ORTHO05D006087 1.4e-15 87.0 55 74.5
PGSC0003DMG400011309 Solanum tuberosum HOM05D005099 ORTHO05D006087 1.4e-15 87.0 61 70.5
Hund24882 Selenicereus undatus HOM05D005099 ORTHO05D006087 1.9e-15 86.7 60 68.3
BraA06t26768Z Brassica rapa HOM05D005099 ORTHO05D006087 2.5e-15 86.3 75 62.7
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 2.5e-15 86.3 76 59.2
Dinv29728 Davidia involucrata HOM05D005099 ORTHO05D006087 2.5e-15 86.3 68 64.7
Nitab4.5_0003767g0020 Nicotiana tabacum HOM05D005099 ORTHO05D006087 2.5e-15 86.3 61 70.5
Thhalv10004959m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 3.2e-15 85.9 58 69.0
Lalb_Chr20g0117371 Lupinus albus HOM05D005099 ORTHO05D006087 3.2e-15 85.9 60 66.7
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 4.2e-15 85.5 68 60.3
Sp2g19520 Schrenkiella parvula HOM05D005099 ORTHO05D006087 5.5e-15 85.1 62 71.0
Thhalv10021591m.g Eutrema salsugineum HOM05D005099 ORTHO05D006087 7.2e-15 84.7 72 61.1
Gohir.A02G050700 Gossypium hirsutum HOM05D005099 ORTHO05D006087 7.2e-15 84.7 60 68.3
Sed0015120 Sechium edule HOM05D005099 ORTHO05D006087 7.2e-15 84.7 55 70.9
Migut.G00130 Erythranthe guttata HOM05D005099 ORTHO05D006087 9.4e-15 84.3 68 69.1
Nn7g36563 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.2e-14 84.0 66 66.7
Potri.010G010600 Populus trichocarpa HOM05D005099 ORTHO05D006087 1.2e-14 84.0 60 68.3
ECA246G4673 Erigeron canadensis HOM05D005099 ORTHO05D006087 2.1e-14 83.2 77 61.0
HanXRQChr06g0173741 Helianthus annuus HOM05D005099 ORTHO05D006087 3.6e-14 82.4 75 57.3
Peaxi162Scf00065g00138 Petunia axillaris HOM05D005099 ORTHO05D006087 3.6e-14 82.4 71 59.2
arahy.Tifrunner.gnm1.ann1.2F59RJ Arachis hypogaea HOM05D005099 ORTHO05D006087 4.6e-14 82.0 60 68.3
arahy.Tifrunner.gnm1.ann1.2UKM1V Arachis hypogaea HOM05D005099 ORTHO05D006087 4.6e-14 82.0 60 68.3
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 4.6e-14 82.0 126 48.4
Oeu033813.1 Olea europaea HOM05D005099 ORTHO05D006087 4.6e-14 82.0 58 69.0
Sabra10G0006200 Salix brachista HOM05D005099 ORTHO05D006087 1.8e-13 80.1 60 65.0
SHI00249 Sapria himalayana HOM05D005099 ORTHO05D006087 1.8e-13 80.1 63 63.5
arahy.Tifrunner.gnm1.ann1.H54SCY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.3e-13 79.7 57 68.4
arahy.Tifrunner.gnm1.ann1.L8YWMY Arachis hypogaea HOM05D005099 ORTHO05D006087 2.3e-13 79.7 57 68.4
Eucgr.H03959 Eucalyptus grandis HOM05D005099 ORTHO05D006087 3.9e-13 79.0 56 62.5
Carub.0008s0899 Capsella rubella HOM05D005099 ORTHO05D006087 8.8e-13 77.8 68 61.8
HanXRQChr17g0536041 Helianthus annuus HOM05D005099 ORTHO05D006087 8.8e-13 77.8 125 44.0
AT5G49170 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 1.1e-12 77.4 67 64.2
BcaNung02585 Brassica carinata HOM05D005099 ORTHO05D006087 1.1e-12 77.4 95 50.5
C07p39730 Brassica napus HOM05D005099 ORTHO05D006087 1.1e-12 77.4 95 50.5
BolC7t44497H Brassica oleracea HOM05D005099 ORTHO05D006087 1.1e-12 77.4 95 50.5
CARHR081450 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.5e-12 77.0 70 52.9
Actinidia00002 Actinidia chinensis HOM05D005099 ORTHO05D006087 2.0e-12 76.6 89 52.8
Carub.0003s0637 Capsella rubella HOM05D005099 ORTHO05D006087 2.5e-12 76.3 72 55.6
Aa31LG5G17420 Aethionema arabicum HOM05D005099 ORTHO05D006087 3.3e-12 75.9 60 58.3
Sp3g05800 Schrenkiella parvula HOM05D005099 ORTHO05D006087 3.3e-12 75.9 64 57.8
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 4.3e-12 75.5 68 51.5
AL8G22700 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 4.3e-12 75.5 67 62.7
BcaC06g30711 Brassica carinata HOM05D005099 ORTHO05D006087 5.7e-12 75.1 93 50.5
A02p37910 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-11 73.9 68 63.2
BNapus_Darmor_BZH_scaffold_117p00120 Brassica napus HOM05D005099 ORTHO05D006087 1.3e-11 73.9 68 57.4
BraA01t04411Z Brassica rapa HOM05D005099 ORTHO05D006087 1.3e-11 73.9 68 57.4
BraA02t08775Z Brassica rapa HOM05D005099 ORTHO05D006087 1.3e-11 73.9 68 63.2
CARHR182490 Cardamine hirsuta HOM05D005099 ORTHO05D006087 1.3e-11 73.9 66 59.1
AL3G17960 Arabidopsis lyrata HOM05D005099 ORTHO05D006087 2.2e-11 73.2 82 47.6
A06p38540 Brassica napus HOM05D005099 ORTHO05D006087 2.2e-11 73.2 98 48.0
SGA_v2.0_scaffold67G22601 Striga asiatica HOM05D005099 ORTHO05D006087 2.2e-11 73.2 55 69.1
BcaC03g17704 Brassica carinata HOM05D005099 ORTHO05D006087 2.8e-11 72.8 68 63.2
C02p57110 Brassica napus HOM05D005099 ORTHO05D006087 2.8e-11 72.8 68 63.2
BolC2t11783H Brassica oleracea HOM05D005099 ORTHO05D006087 2.8e-11 72.8 68 63.2
AT3G06840 Arabidopsis thaliana HOM05D005099 ORTHO05D006087 3.7e-11 72.4 82 47.6
BcaB07g34138 Brassica carinata HOM05D005099 ORTHO05D006087 3.7e-11 72.4 68 61.8
HPP92_011860 Vanilla planifolia HOM05D005099 ORTHO05D006087 6.3e-11 71.6 63 57.1
BcaC09g47923 Brassica carinata HOM05D005099 ORTHO05D006087 3.1e-10 69.3 69 56.5
BolC1t05583H Brassica oleracea HOM05D005099 ORTHO05D006087 3.1e-10 69.3 69 56.5
Sc19g0005440 Simmondsia chinensis HOM05D005099 ORTHO05D006087 1.5e-09 67.0 50 62.0
DCAR_002480 Daucus carota HOM05D005099 ORTHO05D006087 8.5e-08 61.2 151 35.8
DCAR_023299 Daucus carota HOM05D005099 ORTHO05D006087 2.5e-07 59.7 38 71.1


User provided reference genes

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