Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 5.7e-99 364.4 201 100.0
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.1e-78 297.0 211 75.8
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.6e-77 293.1 211 76.3
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 2.7e-77 292.4 211 76.3
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 4.7e-77 291.6 208 76.9
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 1.0e-76 290.4 205 77.1
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.4e-76 290.0 209 76.1
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.8e-76 289.7 206 74.8
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 5.2e-76 288.1 204 76.0
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 8.8e-76 287.3 208 74.5
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 1.5e-75 286.6 210 73.8
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.5e-75 286.6 205 74.6
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 2.0e-75 286.2 210 74.3
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 2.0e-75 286.2 206 76.2
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 2.0e-75 286.2 209 73.7
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 2.6e-75 285.8 210 77.6
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.6e-75 285.8 212 75.0
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 3.3e-75 285.4 208 74.0
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 7.5e-75 284.3 203 74.9
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 9.7e-75 283.9 206 75.2
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.3e-74 283.5 214 75.7
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-74 283.5 206 75.7
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.3e-74 283.5 206 75.7
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 1.3e-74 283.5 211 74.9
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.7e-74 283.1 212 75.0
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 2.8e-74 282.3 202 76.2
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.8e-74 282.3 210 72.9
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.7e-74 282.0 208 72.1
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 3.7e-74 282.0 212 71.7
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 3.7e-74 282.0 212 70.8
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 4.8e-74 281.6 203 77.3
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 6.3e-74 281.2 206 75.7
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.3e-74 281.2 206 75.7
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 6.3e-74 281.2 213 74.6
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 8.2e-74 280.8 206 73.8
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-73 280.4 206 75.2
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.4e-73 280.0 207 74.9
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 1.8e-73 279.6 212 73.1
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 1.8e-73 279.6 206 72.8
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 1.8e-73 279.6 206 73.8
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.4e-73 279.3 214 75.2
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 2.4e-73 279.3 211 73.0
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 3.1e-73 278.9 207 73.9
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 3.1e-73 278.9 206 74.3
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 4.1e-73 278.5 205 72.2
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 4.1e-73 278.5 210 73.3
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 9.1e-73 277.3 211 73.0
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 1.2e-72 276.9 209 72.7
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.6e-72 276.6 215 73.0
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.6e-72 276.6 208 71.2
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 1.6e-72 276.6 206 72.8
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.6e-72 276.6 207 74.9
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 2.0e-72 276.2 214 71.0
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 2.0e-72 276.2 208 74.0
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.7e-72 275.8 205 74.1
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 2.7e-72 275.8 203 73.4
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 3.5e-72 275.4 211 73.5
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 3.5e-72 275.4 211 72.5
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 4.5e-72 275.0 207 75.4
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.9e-72 274.6 208 70.7
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.9e-72 274.6 209 72.2
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.7e-72 274.2 209 71.8
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 1.0e-71 273.9 209 73.2
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 1.0e-71 273.9 206 73.8
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 1.3e-71 273.5 221 68.8
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 1.3e-71 273.5 205 73.2
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-71 273.5 208 71.2
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 1.3e-71 273.5 208 70.7
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 1.3e-71 273.5 209 73.2
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.3e-71 273.5 214 72.0
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.3e-71 273.5 206 73.3
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 2.2e-71 272.7 209 72.7
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 2.2e-71 272.7 202 74.8
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 2.2e-71 272.7 207 71.0
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 3.8e-71 271.9 205 69.3
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 5.0e-71 271.6 213 70.4
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 5.0e-71 271.6 213 71.8
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 6.5e-71 271.2 207 72.5
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 1.9e-70 269.6 211 69.2
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.9e-70 269.6 208 72.6
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 3.2e-70 268.9 211 70.1
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 3.2e-70 268.9 212 70.3
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 5.5e-70 268.1 215 70.7
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 1.6e-69 266.5 204 72.1
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 2.1e-69 266.2 194 76.3
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 2.7e-69 265.8 209 70.8
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.7e-69 265.8 209 71.8
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 4.7e-69 265.0 202 71.3
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 4.7e-69 265.0 208 69.2
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.0e-69 264.2 204 72.5
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 8.0e-69 264.2 204 72.5
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 1.0e-68 263.8 204 72.5
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 2.3e-68 262.7 204 72.1
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 2.3e-68 262.7 207 70.0
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.0e-68 261.9 205 70.2
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 4.0e-68 261.9 205 67.3
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 4.0e-68 261.9 207 71.5
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 6.8e-68 261.2 209 70.3
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 6.8e-68 261.2 223 69.1
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 1.2e-67 260.4 207 70.5
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.5e-67 260.0 206 70.4
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 2.6e-67 259.2 200 69.5
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.4e-67 258.8 206 69.4
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 5.7e-67 258.1 206 69.9
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 7.5e-67 257.7 208 69.2
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.8e-67 257.3 201 70.1
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.3e-66 256.9 207 69.6
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.3e-66 256.9 208 69.2
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.7e-66 256.5 197 73.1
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 2.2e-66 256.1 207 67.1
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 2.8e-66 255.8 207 68.1
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 2.8e-66 255.8 179 75.4
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 2.8e-66 255.8 206 67.0
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 3.7e-66 255.4 211 65.9
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 1.1e-65 253.8 205 69.8
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 3.1e-65 252.3 209 68.4
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 4.1e-65 251.9 208 68.3
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 4.1e-65 251.9 206 69.4
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 5.4e-65 251.5 159 79.2
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 5.4e-65 251.5 206 68.4
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 1.2e-64 250.4 209 67.9
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.2e-64 250.4 205 67.8
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 1.6e-64 250.0 208 67.8
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 2.7e-64 249.2 210 68.1
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 5.0e-63 245.0 213 66.7
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 6.6e-63 244.6 202 67.8
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 6.6e-63 244.6 202 67.8
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 8.6e-63 244.2 153 79.1
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 7.2e-62 241.1 186 73.7
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.2e-61 240.4 162 72.8
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.2e-61 240.4 146 78.1
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 5.2e-60 235.0 197 62.4
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.9e-60 234.2 148 77.7
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 2.0e-59 233.0 188 64.9
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.4e-59 232.3 209 60.8
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.4e-59 231.9 210 60.0
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.8e-58 229.2 185 70.8
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 4.9e-58 228.4 165 70.3
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 8.3e-58 227.6 147 74.8
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.8e-57 226.5 142 79.6
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 2.0e-56 223.0 213 63.8
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 5.9e-56 221.5 208 61.5
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.2e-51 207.2 121 80.2
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.3e-50 203.8 174 66.1
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 7.0e-49 198.0 197 56.3
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 1.2e-48 197.2 124 74.2
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 2.6e-43 179.5 208 55.3
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 6.4e-42 174.9 92 88.0
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 1.7e-39 166.8 213 54.5
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 2.1e-32 143.3 74 91.9
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.5e-32 142.5 205 48.3
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 6.4e-10 68.6 101 51.5
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 9.3e-09 64.7 101 49.5
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 2.1e-08 63.5 101 50.5
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 6.0e-08 62.0 82 47.6


User provided reference genes

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