Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 1.2e-82 309.7 142 100.0
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 4.3e-61 238.0 149 73.8
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 6.3e-60 234.2 149 72.5
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.1e-59 233.4 145 75.9
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 4.1e-59 231.5 150 71.3
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 1.2e-58 229.9 156 67.3
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 1.5e-58 229.6 152 71.1
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 2.0e-58 229.2 149 71.8
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 5.9e-58 227.6 147 72.1
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 1.3e-57 226.5 151 70.2
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 1.7e-57 226.1 152 71.7
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 5.0e-57 224.6 149 71.8
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 5.0e-57 224.6 148 70.3
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 5.0e-57 224.6 148 70.3
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 8.5e-57 223.8 151 70.2
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 1.1e-56 223.4 149 69.8
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 1.1e-56 223.4 146 69.9
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 1.4e-56 223.0 149 70.5
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 1.4e-56 223.0 150 70.7
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.9e-56 222.6 154 68.8
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 1.9e-56 222.6 145 70.3
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 2.5e-56 222.2 152 69.7
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 2.5e-56 222.2 146 71.2
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 3.2e-56 221.9 150 68.7
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 5.5e-56 221.1 148 69.6
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 7.2e-56 220.7 148 68.9
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 9.3e-56 220.3 156 67.3
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 2.1e-55 219.2 150 68.0
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 2.1e-55 219.2 150 68.0
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 2.7e-55 218.8 139 74.1
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 2.7e-55 218.8 146 71.9
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 3.6e-55 218.4 148 68.2
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 4.6e-55 218.0 145 71.0
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 7.9e-55 217.2 157 65.0
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 1.3e-54 216.5 144 68.8
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 5.1e-54 214.5 145 69.7
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 8.7e-54 213.8 146 69.2
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 8.7e-54 213.8 146 69.2
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 1.1e-53 213.4 147 68.7
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 3.3e-53 211.8 149 68.5
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 4.3e-53 211.5 150 66.7
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 5.7e-53 211.1 141 69.5
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 7.4e-53 210.7 149 68.5
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 7.4e-53 210.7 149 67.1
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 1.3e-52 209.9 146 68.5
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 1.3e-52 209.9 145 66.9
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 3.7e-52 208.4 145 69.0
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 3.7e-52 208.4 145 69.0
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 4.8e-52 208.0 137 70.8
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 6.3e-52 207.6 145 69.0
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 1.1e-51 206.8 141 68.1
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 1.1e-51 206.8 141 68.1
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 1.4e-51 206.5 140 72.1
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 1.4e-51 206.5 149 67.1
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 2.4e-51 205.7 144 68.1
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 2.4e-51 205.7 145 69.0
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 9.1e-51 203.8 146 68.5
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 9.1e-51 203.8 146 67.8
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 9.1e-51 203.8 152 65.1
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 2.6e-50 202.2 143 67.8
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 3.4e-50 201.8 140 70.7
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 3.4e-50 201.8 143 65.7
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 3.4e-50 201.8 144 67.4
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 7.7e-50 200.7 146 65.8
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 1.9e-48 196.1 149 63.1
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 1.9e-48 196.1 150 64.7
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 1.2e-47 193.4 149 62.4
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 1.6e-47 193.0 149 62.4
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 1.6e-47 193.0 143 65.0
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 1.4e-46 189.9 135 69.6
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 1.8e-46 189.5 135 67.4
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 2.3e-46 189.1 146 63.0
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 6.7e-46 187.6 149 63.1
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 6.9e-43 177.6 149 57.7
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 1.0e-38 163.7 142 54.2
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 1.0e-38 163.7 142 54.2
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 1.0e-38 163.7 142 54.9
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 2.3e-38 162.5 148 55.4
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 3.9e-38 161.8 142 53.5
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 1.1e-37 160.2 142 52.8
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 1.1e-37 160.2 142 52.8
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 4.4e-37 158.3 142 54.2
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 7.4e-37 157.5 142 52.1
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 9.7e-37 157.1 142 53.5
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 1.3e-36 156.8 140 54.3
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 2.2e-36 156.0 140 54.3
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 5.3e-35 151.4 137 52.6
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 1.0e-33 147.1 122 55.7
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 8.5e-33 144.1 122 57.4
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 3.6e-31 138.7 109 61.5
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 4.1e-27 125.2 75 77.3
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 1.3e-25 120.2 140 42.9
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 6.8e-22 107.8 69 75.4
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 1.3e-20 103.6 71 70.4
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 3.7e-20 102.1 70 67.1
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 2.4e-19 99.4 77 62.3
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 7.7e-18 94.4 112 45.5
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 8.6e-17 90.9 112 44.6


User provided reference genes

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