Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 5.3e-63 244.2 125 100.0
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 3.7e-40 168.3 115 77.4
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 8.3e-40 167.2 122 73.8
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 3.1e-39 165.2 114 75.4
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 3.5e-30 135.2 137 59.1
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 3.6e-27 125.2 91 73.6
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.3e-26 122.5 167 47.9
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 3.0e-21 105.5 99 59.6
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 5.0e-21 104.8 100 60.0
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 6.6e-21 104.4 107 54.2
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 6.6e-21 104.4 70 74.3
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 1.9e-20 102.8 80 65.0
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 7.3e-20 100.9 155 43.2
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 1.2e-19 100.1 80 67.5
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 4.7e-19 98.2 70 70.0
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 8.0e-19 97.4 93 60.2
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.1e-18 97.1 115 54.8
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.4e-18 96.7 119 52.9
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 1.8e-18 96.3 68 70.6
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 1.8e-18 96.3 102 52.0
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 2.3e-18 95.9 77 64.9
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 4.0e-18 95.1 80 60.0
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 4.0e-18 95.1 143 43.4
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 4.0e-18 95.1 97 55.7
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 4.0e-18 95.1 89 58.4
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 5.2e-18 94.7 147 42.2
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 6.8e-18 94.4 92 53.3
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 6.8e-18 94.4 74 63.5
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 6.8e-18 94.4 107 51.4
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 8.9e-18 94.0 72 65.3
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 2.0e-17 92.8 80 58.8
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 2.6e-17 92.4 92 52.2
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 3.4e-17 92.0 107 49.5
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 3.4e-17 92.0 147 43.5
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 4.4e-17 91.7 107 48.6
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 4.4e-17 91.7 107 48.6
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 5.8e-17 91.3 103 53.4
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 7.5e-17 90.9 72 63.9
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 1.3e-16 90.1 106 51.9
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.7e-16 89.7 74 62.2
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 2.2e-16 89.4 127 44.9
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 2.9e-16 89.0 107 46.7
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.9e-16 89.0 134 44.0
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 3.7e-16 88.6 80 57.5
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 3.7e-16 88.6 123 47.2
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 3.7e-16 88.6 125 46.4
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 6.4e-16 87.8 107 47.7
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 8.3e-16 87.4 100 47.0
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 8.3e-16 87.4 70 60.0
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-15 87.0 121 44.6
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 1.4e-15 86.7 135 42.2
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 1.4e-15 86.7 117 41.9
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 2.4e-15 85.9 95 49.5
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 2.4e-15 85.9 79 57.0
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 3.2e-15 85.5 67 61.2
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 3.2e-15 85.5 129 45.7
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 4.1e-15 85.1 76 53.9
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 4.1e-15 85.1 79 57.0
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 4.1e-15 85.1 81 55.6
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 4.1e-15 85.1 77 57.1
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 5.4e-15 84.7 70 57.1
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 7.0e-15 84.3 72 56.9
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 9.2e-15 84.0 80 52.5
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.2e-14 83.6 106 44.3
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 1.6e-14 83.2 130 43.8
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 2.1e-14 82.8 72 56.9
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 2.7e-14 82.4 72 58.3
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.5e-14 82.0 70 58.6
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 4.6e-14 81.6 70 58.6
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 6.0e-14 81.3 59 62.7
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 7.8e-14 80.9 80 50.0
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.3e-13 80.1 63 65.1
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 1.3e-13 80.1 64 62.5
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 1.7e-13 79.7 73 58.9
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 1.7e-13 79.7 105 45.7
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 2.3e-13 79.3 70 57.1
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 2.3e-13 79.3 70 57.1
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 2.3e-13 79.3 95 47.4
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 3.0e-13 79.0 109 45.0
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 5.1e-13 78.2 66 60.6
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 8.6e-13 77.4 72 56.9
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 1.1e-12 77.0 62 59.7
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 1.9e-12 76.3 72 52.8
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 1.9e-12 76.3 70 57.1
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 2.5e-12 75.9 111 40.5
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 2.5e-12 75.9 70 55.7
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 3.3e-12 75.5 74 54.1
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 3.3e-12 75.5 75 57.3
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 4.3e-12 75.1 72 54.2
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 4.3e-12 75.1 120 43.3
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 5.6e-12 74.7 110 43.6
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 5.6e-12 74.7 106 47.2
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 9.5e-12 73.9 109 47.7
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 9.5e-12 73.9 70 54.3
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 9.5e-12 73.9 72 54.2
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 9.5e-12 73.9 67 55.2
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.2e-11 73.6 73 57.5
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 1.6e-11 73.2 81 55.6
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 1.6e-11 73.2 109 43.1
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 2.1e-11 72.8 108 42.6
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 2.1e-11 72.8 140 37.1
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 3.6e-11 72.0 74 51.4
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 4.7e-11 71.6 70 52.9
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 4.7e-11 71.6 61 62.3
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 4.7e-11 71.6 72 50.0
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 8.1e-11 70.9 72 48.6
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.1e-10 70.5 84 48.8
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.1e-10 70.5 73 56.2
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 1.4e-10 70.1 149 37.6
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 1.4e-10 70.1 71 50.7
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 1.8e-10 69.7 93 41.9
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 2.3e-10 69.3 99 39.4
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 2.3e-10 69.3 73 52.1
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 3.1e-10 68.9 75 53.3
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 3.1e-10 68.9 70 48.6
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 3.1e-10 68.9 73 53.4
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 4.0e-10 68.6 73 52.1
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 4.0e-10 68.6 93 41.9
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 5.2e-10 68.2 86 46.5
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 5.2e-10 68.2 86 46.5
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 5.2e-10 68.2 86 46.5
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 5.2e-10 68.2 101 47.5
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 5.2e-10 68.2 70 48.6
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 6.8e-10 67.8 88 47.7
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 1.2e-09 67.0 73 50.7
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 1.2e-09 67.0 113 38.9
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 5.8e-09 64.7 73 50.7
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 2.2e-08 62.8 76 52.6
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 2.2e-08 62.8 98 48.0
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.9e-08 62.4 72 44.4
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 3.7e-08 62.0 76 48.7
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 6.4e-08 61.2 70 51.4
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 6.4e-08 61.2 76 51.3
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 1.4e-07 60.1 76 51.3
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.4e-07 60.1 76 48.7
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.4e-07 60.1 116 37.1
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 2.4e-07 59.3 120 35.8
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 5.4e-07 58.2 70 51.4
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 6.0e-06 54.7 66 40.9
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 6.0e-06 54.7 112 33.0


User provided reference genes

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