Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 2.4e-77 292.0 137 100.0
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.6e-76 287.7 137 97.8
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-75 286.2 137 97.1
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 1.3e-70 269.6 137 91.2
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 3.2e-61 238.4 112 97.3
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.3e-50 201.8 96 97.9
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 8.5e-46 187.2 136 64.0
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 5.5e-45 184.5 135 63.7
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 2.1e-44 182.6 128 62.5
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 2.1e-44 182.6 138 60.9
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 2.1e-44 182.6 128 62.5
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 2.1e-44 182.6 138 60.9
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.7e-41 171.8 132 59.8
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 4.1e-40 168.3 132 57.6
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 2.6e-39 165.6 132 56.1
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 8.5e-38 160.6 130 56.2
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 3.2e-37 158.7 132 53.0
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 7.2e-37 157.5 130 56.9
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 4.7e-36 154.8 127 54.3
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 1.0e-35 153.7 136 52.9
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-34 150.2 128 55.5
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-32 143.7 133 51.1
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 1.8e-32 142.9 127 51.2
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 2.4e-32 142.5 127 52.0
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.2e-31 140.2 133 51.1
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 1.2e-31 140.2 133 51.1
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.3e-30 136.7 124 48.4
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 8.5e-30 134.0 119 48.7
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 8.5e-30 134.0 125 52.0
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 1.1e-29 133.7 139 51.1
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.2e-28 130.2 130 47.7
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.2e-28 130.2 128 50.0
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 4.7e-28 128.3 131 48.9
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 6.1e-28 127.9 128 50.0
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.1e-28 127.9 119 47.1
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.0e-28 127.5 128 45.3
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-27 127.1 128 45.3
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 1.0e-27 127.1 119 47.9
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 1.4e-27 126.7 122 47.5
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.4e-27 126.7 128 46.1
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.4e-27 126.7 128 46.1
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 1.8e-27 126.3 128 46.9
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.0e-27 125.6 115 49.6
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 5.2e-27 124.8 129 45.7
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 8.8e-27 124.0 123 48.0
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 8.8e-27 124.0 130 47.7
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 1.1e-26 123.6 117 47.0
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.1e-26 123.6 116 51.7
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 3.3e-26 122.1 135 47.4
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 4.4e-26 121.7 137 47.4
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 9.7e-26 120.6 128 43.8
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 3.7e-25 118.6 130 46.2
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 4.8e-25 118.2 104 49.0
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 6.3e-25 117.9 128 43.8
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 6.3e-25 117.9 128 43.8
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 1.1e-24 117.1 128 43.8
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 1.8e-24 116.3 118 46.6
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 1.8e-24 116.3 118 46.6
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.4e-24 115.9 129 42.6
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.4e-24 115.9 125 44.0
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.0e-24 114.4 128 43.0
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.2e-23 113.6 127 44.9
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 1.6e-23 113.2 127 40.9
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 1.0e-22 110.5 122 45.1
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.3e-22 110.2 130 41.5
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.8e-22 108.6 130 42.3
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-21 107.1 137 39.4
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 1.5e-21 106.7 119 45.4
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-21 105.9 128 42.2
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.2e-21 105.5 109 46.8
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.2e-21 104.4 135 41.5
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.2e-20 103.6 141 43.3
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-20 103.2 127 45.7
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.6e-20 103.2 127 44.1
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-20 102.8 133 39.8
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.7e-20 102.4 134 39.6
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.6e-20 102.1 138 41.3
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 6.1e-20 101.3 103 47.6
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-19 100.5 139 38.1
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.4e-19 100.1 134 37.3
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 1.4e-19 100.1 134 37.3
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.4e-19 100.1 126 40.5
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.8e-19 99.8 140 42.1
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.8e-19 99.8 124 40.3
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.3e-19 99.4 117 41.0
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.2e-19 98.2 127 39.4
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.2e-19 98.2 138 38.4
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.8e-19 97.8 115 43.5
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 8.8e-19 97.4 127 43.3
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 1.2e-18 97.1 133 38.3
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.0e-18 96.3 100 51.0
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 2.0e-18 96.3 111 41.4
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.6e-18 95.9 65 63.1
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 3.4e-18 95.5 133 36.8
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 9.7e-18 94.0 126 38.9
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.3e-17 93.6 125 41.6
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.2e-17 92.8 134 37.3
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.3e-17 90.9 129 37.2
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-16 90.5 128 37.5
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 2.4e-16 89.4 133 35.3
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 4.1e-16 88.6 137 38.0
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 4.1e-16 88.6 117 39.3
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-16 88.6 118 39.0
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 4.1e-16 88.6 118 39.0
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 5.3e-16 88.2 133 34.6
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-15 87.0 137 35.0
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 1.2e-15 87.0 110 39.1
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.0e-15 86.3 138 40.6
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.5e-15 85.5 127 38.6
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.7e-14 83.2 128 35.2
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.9e-14 82.4 132 34.1
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.0e-14 81.6 127 36.2
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 6.5e-14 81.3 127 37.0
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-13 80.1 94 42.6
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 1.9e-13 79.7 113 36.3
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.9e-13 79.7 115 31.3
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 5.5e-13 78.2 127 37.0
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 5.5e-13 78.2 127 37.0
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 7.2e-13 77.8 127 33.1
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.4e-13 77.4 97 37.1
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 8.0e-12 74.3 128 34.4
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-11 73.2 83 45.8
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 4.0e-11 72.0 105 36.2
Lsat_1_v5_gn_0_11001 Lactuca sativa HOM05D004865 ORTHO05D005949 5.2e-11 71.6 132 35.6
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.8e-11 70.9 130 33.1
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-10 70.5 95 38.9
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.5e-10 70.1 83 37.3
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 2.0e-10 69.7 87 37.9
MELO3C031484.2 Cucumis melo HOM05D004865 ORTHO05D005949 5.7e-10 68.2 135 37.0
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-09 65.9 122 34.4
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.4e-08 63.5 79 43.0
ClCG11G011710 Citrullus lanatus HOM05D004865 ORTHO05D034719 2.4e-08 62.8 134 36.6
Sed0020964 Sechium edule HOM05D004865 ORTHO05D005949 2.4e-08 62.8 91 44.0
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 1.2e-07 60.5 128 34.4
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 5.9e-07 58.2 70 40.0


User provided reference genes

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