Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 3.9e-53 211.1 97 100.0
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-50 203.0 96 97.9
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 3.1e-50 201.4 96 96.9
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 5.2e-50 200.7 96 95.8
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 7.8e-46 186.8 95 90.5
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 1.1e-36 156.4 75 94.7
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.7e-32 142.5 95 65.3
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 1.7e-32 142.5 95 65.3
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 3.8e-32 141.4 95 64.2
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 3.8e-32 141.4 95 64.2
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 3.2e-31 138.3 93 66.7
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.2e-30 136.3 93 65.6
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.9e-23 112.5 95 55.8
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.6e-22 109.4 95 53.7
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.6e-22 109.4 95 53.7
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 2.7e-22 108.6 92 55.4
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 6.0e-22 107.5 94 52.1
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 1.0e-21 106.7 95 51.6
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 3.0e-21 105.1 94 52.1
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 6.7e-21 104.0 94 51.1
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.1e-20 103.2 95 50.5
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 1.9e-20 102.4 94 52.1
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 2.5e-20 102.1 94 51.1
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.3e-19 99.8 92 50.0
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 2.1e-19 99.0 94 50.0
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 4.8e-19 97.8 92 51.1
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.8e-18 95.9 96 45.8
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.0e-18 94.7 96 44.8
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.3e-18 94.4 95 46.3
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.3e-18 94.4 95 49.5
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.9e-18 94.0 92 45.7
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.2e-17 93.2 95 47.4
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.2e-17 93.2 96 49.0
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.5e-17 92.8 87 47.1
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 2.0e-17 92.4 96 47.9
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 3.4e-17 91.7 95 48.4
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 4.5e-17 91.3 95 45.3
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.0e-16 90.1 97 41.2
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.0e-16 90.1 96 43.8
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 1.7e-16 89.4 96 39.6
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 2.2e-16 89.0 92 45.7
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.2e-16 89.0 95 47.4
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.2e-16 89.0 95 47.4
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 2.9e-16 88.6 89 44.9
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 3.8e-16 88.2 94 50.0
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.8e-16 88.2 93 44.1
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.8e-16 88.2 93 44.1
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.5e-16 87.4 96 40.6
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.5e-16 87.4 87 44.8
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 6.5e-16 87.4 95 47.4
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-15 86.7 93 44.1
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-15 86.7 93 44.1
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 1.9e-15 85.9 87 44.8
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.2e-15 85.1 90 45.6
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 4.2e-15 84.7 95 43.2
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 5.5e-15 84.3 84 44.0
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 7.1e-15 84.0 85 47.1
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 1.2e-14 83.2 96 38.5
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-14 83.2 96 42.7
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 3.5e-14 81.6 72 48.6
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 4.6e-14 81.3 96 42.7
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 4.6e-14 81.3 96 42.7
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.0e-14 80.9 96 42.7
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 7.9e-14 80.5 88 44.3
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 7.9e-14 80.5 96 42.7
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.9e-14 80.5 96 40.6
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 1.0e-13 80.1 93 38.7
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 1.0e-13 80.1 71 50.7
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.8e-13 79.3 74 50.0
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-13 79.3 96 42.7
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-13 79.3 102 40.2
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.3e-13 79.0 74 51.4
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.9e-13 78.2 94 40.4
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 5.1e-13 77.8 93 40.9
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 6.7e-13 77.4 72 45.8
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 6.7e-13 77.4 84 42.9
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 6.7e-13 77.4 84 42.9
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 8.7e-13 77.0 100 36.0
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 8.7e-13 77.0 100 36.0
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.7e-13 77.0 97 41.2
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.7e-13 77.0 97 41.2
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-12 76.3 97 42.3
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.9e-12 75.9 78 43.6
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.9e-12 75.9 97 39.2
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 3.3e-12 75.1 94 40.4
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.3e-12 74.7 101 36.6
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 7.4e-12 73.9 94 38.3
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.8e-11 72.0 97 40.2
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.8e-11 71.2 94 39.4
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 8.2e-11 70.5 90 38.9
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 8.2e-11 70.5 93 35.5
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.4e-10 69.7 91 41.8
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 1.4e-10 69.7 92 41.3
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.8e-10 69.3 88 38.6
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.1e-10 68.6 95 38.9
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.3e-10 67.8 83 43.4
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 6.9e-10 67.4 97 33.0
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 9.0e-10 67.0 82 39.0
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.2e-09 66.6 93 37.6
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.0e-09 65.9 95 38.9
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 4.5e-09 64.7 81 38.3
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 4.5e-09 64.7 84 32.1
AUR62014650 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.0e-08 63.5 79 43.0
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 1.0e-08 63.5 83 36.1
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 3.8e-08 61.6 93 39.8
Sed0020964 Sechium edule HOM05D004865 ORTHO05D005949 3.8e-08 61.6 90 43.3
Sc23g0005400 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-08 60.8 96 35.4
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-07 60.1 81 38.3
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 1.1e-07 60.1 81 38.3
EL10Ac6g13635 Beta vulgaris HOM05D004865 ORTHO05D005949 9.3e-07 57.0 91 33.0
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 9.3e-07 57.0 99 39.4
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 9.3e-07 57.0 91 35.2
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 9.3e-07 57.0 84 34.5
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 3.6e-06 55.1 43 53.5
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 6.1e-06 54.3 93 34.4
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 6.1e-06 54.3 93 34.4
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 7.9e-06 53.9 59 39.0


User provided reference genes

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