Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 1.1e-19 100.1 108 100.0
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 1.3e-12 76.6 38 94.7
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 1.3e-12 76.6 38 94.7
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 1.3e-12 76.6 38 94.7
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 1.3e-12 76.6 38 94.7
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.7e-12 76.3 37 100.0
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.7e-12 76.3 37 100.0
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 1.7e-12 76.3 37 100.0
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 1.7e-12 76.3 37 100.0
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 1.7e-12 76.3 37 100.0
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 1.7e-12 76.3 37 100.0
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.7e-12 76.3 38 92.1
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.7e-12 76.3 37 100.0
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 2.2e-12 75.9 37 97.3
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 2.2e-12 75.9 37 97.3
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 2.8e-12 75.5 38 97.4
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 3.7e-12 75.1 37 97.3
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 3.7e-12 75.1 38 92.1
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 3.7e-12 75.1 38 92.1
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 3.7e-12 75.1 38 92.1
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.7e-12 75.1 38 94.7
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.7e-12 75.1 38 97.4
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 4.8e-12 74.7 37 97.3
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 4.8e-12 74.7 36 100.0
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 4.8e-12 74.7 37 97.3
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 6.3e-12 74.3 36 97.2
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 6.3e-12 74.3 36 97.2
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 6.3e-12 74.3 36 97.2
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 6.3e-12 74.3 36 97.2
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 6.3e-12 74.3 36 97.2
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 6.3e-12 74.3 38 92.1
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 8.2e-12 73.9 38 92.1
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.1e-11 73.6 37 94.6
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 1.1e-11 73.6 36 97.2
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 1.1e-11 73.6 36 97.2
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.1e-11 73.6 36 97.2
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 1.1e-11 73.6 36 97.2
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 1.1e-11 73.6 36 97.2
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 1.1e-11 73.6 36 97.2
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 1.1e-11 73.6 37 94.6
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 1.4e-11 73.2 36 94.4
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 1.4e-11 73.2 36 94.4
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.4e-11 73.2 36 97.2
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.4e-11 73.2 37 97.3
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 1.4e-11 73.2 36 94.4
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 1.4e-11 73.2 36 94.4
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 1.4e-11 73.2 36 97.2
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.8e-11 72.8 36 97.2
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.8e-11 72.8 36 97.2
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 1.8e-11 72.8 36 94.4
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 1.8e-11 72.8 36 94.4
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 1.8e-11 72.8 36 94.4
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 2.4e-11 72.4 36 94.4
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 2.4e-11 72.4 36 94.4
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 2.4e-11 72.4 36 97.2
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 2.4e-11 72.4 36 97.2
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 3.1e-11 72.0 37 91.9
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 3.1e-11 72.0 37 91.9
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 3.1e-11 72.0 37 94.6
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 3.1e-11 72.0 37 91.9
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 3.1e-11 72.0 36 94.4
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 3.1e-11 72.0 37 91.9
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 3.1e-11 72.0 36 94.4
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 3.1e-11 72.0 36 94.4
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 4.1e-11 71.6 36 91.7
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 4.1e-11 71.6 36 94.4
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 4.1e-11 71.6 37 89.2
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 4.1e-11 71.6 36 94.4
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 4.1e-11 71.6 38 89.5
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 5.3e-11 71.2 36 94.4
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 5.3e-11 71.2 36 94.4
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 5.3e-11 71.2 36 94.4
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 5.3e-11 71.2 36 94.4
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 5.3e-11 71.2 36 94.4
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 5.3e-11 71.2 36 94.4
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 5.3e-11 71.2 37 91.9
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 7.0e-11 70.9 36 91.7
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 7.0e-11 70.9 36 88.9
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 9.1e-11 70.5 36 91.7
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 1.2e-10 70.1 38 86.8
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 2.6e-10 68.9 36 86.1
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 2.6e-10 68.9 36 86.1
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 2.6e-10 68.9 38 84.2
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 2.6e-10 68.9 36 91.7
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 3.5e-10 68.6 38 84.2
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 3.5e-10 68.6 37 86.5
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 4.5e-10 68.2 36 86.1
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 4.5e-10 68.2 38 89.5
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 5.9e-10 67.8 37 86.5
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 7.7e-10 67.4 36 86.1
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 5.0e-09 64.7 36 83.3
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.5e-09 64.3 34 91.2
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 1.1e-08 63.5 37 83.8
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 9.4e-08 60.5 36 80.6
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 1.2e-07 60.1 36 75.0
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 1.6e-07 59.7 36 80.6
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 1.6e-07 59.7 36 80.6
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 2.1e-07 59.3 38 71.1
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 6.7e-06 54.3 30 86.7


User provided reference genes

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