Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P245T2 Lonicera japonica HOM05D000009 ORTHO05D004635 1.5e-61 239.2 113 100.0
Lj6C243T2 Lonicera japonica HOM05D000009 ORTHO05D004635 4.0e-25 118.2 84 66.7
Lj6C246T0 Lonicera japonica HOM05D000009 ORTHO05D004635 4.0e-25 118.2 84 66.7
Lj6C263T2 Lonicera japonica HOM05D000009 ORTHO05D004635 5.2e-25 117.9 84 69.0
Lj6C293G0 Lonicera japonica HOM05D000009 ORTHO05D004635 1.2e-24 116.7 83 68.7
Lj9C183T2 Lonicera japonica HOM05D000009 ORTHO05D004635 1.5e-24 116.3 84 67.9
Lj9C189T1 Lonicera japonica HOM05D000009 ORTHO05D004635 2.0e-24 115.9 84 67.9
Lj6C247T5 Lonicera japonica HOM05D000009 ORTHO05D004635 3.4e-24 115.2 84 67.9
Lj6C202T1 Lonicera japonica HOM05D000009 ORTHO05D004635 7.5e-24 114.0 84 67.9
Lj6P159T7 Lonicera japonica HOM05D000009 ORTHO05D004635 9.8e-24 113.6 66 75.8
Lj6C262T0 Lonicera japonica HOM05D000009 ORTHO05D004635 2.2e-23 112.5 84 65.5
Lj6C244T2 Lonicera japonica HOM05D000009 ORTHO05D004635 4.6e-21 104.8 84 60.7
Lj6C183T2 Lonicera japonica HOM05D000009 ORTHO05D004635 1.0e-20 103.6 73 68.5
Lj6P260T1 Lonicera japonica HOM05D000009 ORTHO05D004635 3.0e-20 102.1 79 60.8
Lj6P201T30 Lonicera japonica HOM05D000009 ORTHO05D004635 1.9e-19 99.4 84 60.7
Lj6P195T8 Lonicera japonica HOM05D000009 ORTHO05D004635 1.7e-15 86.3 71 60.6
Dinv10771 Davidia involucrata HOM05D000009 ORTHO05D000008 4.6e-13 78.2 117 38.5
Lj6P198T0 Lonicera japonica HOM05D000009 ORTHO05D004635 1.3e-12 76.6 59 61.0
Hma1.2p1_0324F.1_g125670 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 2.3e-12 75.9 54 63.0
Hma1.2p1_3259F.1_g334630 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 2.3e-12 75.9 54 63.0
Dinv10765 Davidia involucrata HOM05D000009 ORTHO05D000008 6.6e-12 74.3 68 52.9
Dinv02340 Davidia involucrata HOM05D000009 ORTHO05D004635 1.5e-11 73.2 60 60.0
Dinv10784 Davidia involucrata HOM05D000009 ORTHO05D004635 4.3e-11 71.6 59 55.9
Dinv18723 Davidia involucrata HOM05D000009 ORTHO05D004635 4.3e-11 71.6 66 53.0
Dinv22080 Davidia involucrata HOM05D000009 ORTHO05D000008 4.3e-11 71.6 63 52.4
Hma1.2p1_1404F.1_g281250 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 4.3e-11 71.6 54 61.1
Lj6C177T2 Lonicera japonica HOM05D000009 ORTHO05D004635 4.3e-11 71.6 50 68.0
Hma1.2p1_0401F.1_g144730 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.6e-10 69.7 48 62.5
Hma1.2p1_0401F.1_g144820 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.6e-10 69.7 48 64.6
Hma1.2p1_0401F.1_g144840 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 2.1e-10 69.3 48 64.6
Lj6A231T12 Lonicera japonica HOM05D000009 ORTHO05D004635 3.6e-10 68.6 51 64.7
Lj6C182T1 Lonicera japonica HOM05D000009 ORTHO05D004635 3.6e-10 68.6 51 60.8
Lj6C202T0 Lonicera japonica HOM05D000009 ORTHO05D004635 3.6e-10 68.6 51 60.8
Dinv00130 Davidia involucrata HOM05D000009 ORTHO05D000008 4.7e-10 68.2 88 42.0
Dinv10782 Davidia involucrata HOM05D000009 ORTHO05D004635 1.4e-09 66.6 66 51.5
Oeu038941.1 Olea europaea HOM05D000009 ORTHO05D000008 2.3e-09 65.9 66 43.9
QL10p058489 Quercus lobata HOM05D000009 ORTHO05D000008 4.0e-09 65.1 72 41.7
SalBow3G3576 Salvia bowleyana HOM05D000009 ORTHO05D000008 4.0e-09 65.1 101 37.6
Lj6C208T1 Lonicera japonica HOM05D000009 ORTHO05D004635 5.2e-09 64.7 51 60.8
MD03G1052500 Malus domestica HOM05D000009 ORTHO05D000008 5.2e-09 64.7 62 50.0
Hma1.2p1_0401F.1_g144880 Hydrangea macrophylla HOM05D000009 ORTHO05D004635 6.8e-09 64.3 49 57.1
RcHm_v2.0_Chr3g0464281 Rosa chinensis HOM05D000009 ORTHO05D000008 8.9e-09 63.9 59 47.5
PGSC0003DMG400012918 Solanum tuberosum HOM05D000009 ORTHO05D000008 8.9e-09 63.9 77 45.5
SalBow3G1566 Salvia bowleyana HOM05D000009 ORTHO05D004635 1.2e-08 63.5 101 36.6
SalBow3G2431 Salvia bowleyana HOM05D000009 ORTHO05D000008 1.2e-08 63.5 69 46.4
Cc03_g14580 Coffea canephora HOM05D000009 ORTHO05D000008 1.5e-08 63.2 55 52.7
Lj6C216T0 Lonicera japonica HOM05D000009 ORTHO05D004635 2.0e-08 62.8 51 60.8
QL10p019675 Quercus lobata HOM05D000009 ORTHO05D000008 2.6e-08 62.4 81 35.8
QL10p057818 Quercus lobata HOM05D000009 ORTHO05D000008 2.6e-08 62.4 66 43.9
SalBow3G3054 Salvia bowleyana HOM05D000009 ORTHO05D000008 2.6e-08 62.4 76 36.8
MD11G1051100 Malus domestica HOM05D000009 ORTHO05D000008 3.4e-08 62.0 66 47.0
Oeu038939.1 Olea europaea HOM05D000009 ORTHO05D000008 3.4e-08 62.0 66 42.4
QL10p057758 Quercus lobata HOM05D000009 ORTHO05D000008 3.4e-08 62.0 72 41.7
QL10p058513 Quercus lobata HOM05D000009 ORTHO05D000008 3.4e-08 62.0 66 43.9
MD03G1048000 Malus domestica HOM05D000009 ORTHO05D000008 4.4e-08 61.6 70 44.3
MD11G1055800 Malus domestica HOM05D000009 ORTHO05D000008 4.4e-08 61.6 52 51.9
QL10p058378 Quercus lobata HOM05D000009 ORTHO05D000008 4.4e-08 61.6 72 40.3
Lj6P181T12 Lonicera japonica HOM05D000009 ORTHO05D004635 5.8e-08 61.2 54 55.6
SalBow3G0882 Salvia bowleyana HOM05D000009 ORTHO05D000008 5.8e-08 61.2 100 36.0
MD11G1050400 Malus domestica HOM05D000009 ORTHO05D000008 7.5e-08 60.8 66 48.5
QL10p057335 Quercus lobata HOM05D000009 ORTHO05D000008 7.5e-08 60.8 79 36.7
RcHm_v2.0_Chr5g0055871 Rosa chinensis HOM05D000009 ORTHO05D000008 7.5e-08 60.8 73 39.7
Lj6C193T7 Lonicera japonica HOM05D000009 ORTHO05D004635 9.9e-08 60.5 51 58.8
MD03G1054100 Malus domestica HOM05D000009 ORTHO05D000008 9.9e-08 60.5 60 48.3
QL10p057907 Quercus lobata HOM05D000009 ORTHO05D000008 9.9e-08 60.5 79 36.7
QL10p058080 Quercus lobata HOM05D000009 ORTHO05D000008 9.9e-08 60.5 66 42.4
QL10p057019 Quercus lobata HOM05D000009 ORTHO05D000008 1.3e-07 60.1 79 35.4
QL10p058166 Quercus lobata HOM05D000009 ORTHO05D000008 1.3e-07 60.1 77 39.0
QL10p059399 Quercus lobata HOM05D000009 ORTHO05D000008 1.3e-07 60.1 100 32.0
CsaV3_3G031840 Cucumis sativus L. HOM05D000009 ORTHO05D000008 1.7e-07 59.7 89 39.3
Gohir.A01G026001 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.7e-07 59.7 87 40.2
MD11G1050600 Malus domestica HOM05D000009 ORTHO05D000008 2.2e-07 59.3 64 50.0
QL10p058402 Quercus lobata HOM05D000009 ORTHO05D000008 2.2e-07 59.3 79 36.7
QL11p007817 Quercus lobata HOM05D000009 ORTHO05D000008 2.2e-07 59.3 76 38.2
RcHm_v2.0_Chr1g0317761 Rosa chinensis HOM05D000009 ORTHO05D000008 2.2e-07 59.3 49 49.0
RcHm_v2.0_Chr1g0317831 Rosa chinensis HOM05D000009 ORTHO05D000008 2.9e-07 58.9 50 54.0
RcHm_v2.0_Chr3g0466331 Rosa chinensis HOM05D000009 ORTHO05D000008 2.9e-07 58.9 61 45.9
RcHm_v2.0_Chr3g0491011 Rosa chinensis HOM05D000009 ORTHO05D000008 2.9e-07 58.9 56 51.8
ClCG02G007660 Citrullus lanatus HOM05D000009 ORTHO05D000008 3.7e-07 58.5 93 36.6
ClCG02G007710 Citrullus lanatus HOM05D000009 ORTHO05D000008 3.7e-07 58.5 93 36.6
MELO3C021831.2 Cucumis melo HOM05D000009 ORTHO05D000008 3.7e-07 58.5 62 43.5
Solyc02g030280.2 Solanum lycopersicum HOM05D000009 ORTHO05D000008 3.7e-07 58.5 48 56.2
ClCG10G015850 Citrullus lanatus HOM05D000009 ORTHO05D000008 4.9e-07 58.2 81 35.8
CsaV3_5G012440 Cucumis sativus L. HOM05D000009 ORTHO05D000008 4.9e-07 58.2 78 37.2
FAN14G4141 Fragaria x ananassa HOM05D000009 ORTHO05D000008 4.9e-07 58.2 50 54.0
RcHm_v2.0_Chr4g0412461 Rosa chinensis HOM05D000009 ORTHO05D000008 4.9e-07 58.2 50 52.0
PGSC0003DMG400008596 Solanum tuberosum HOM05D000009 ORTHO05D000008 4.9e-07 58.2 90 34.4
EL10Ac1g01016 Beta vulgaris HOM05D000009 ORTHO05D000008 6.4e-07 57.8 59 47.5
RcHm_v2.0_Chr3g0490951 Rosa chinensis HOM05D000009 ORTHO05D000008 6.4e-07 57.8 56 50.0
SalBow3G0497 Salvia bowleyana HOM05D000009 ORTHO05D000008 6.4e-07 57.8 90 38.9
PGSC0003DMG400021779 Solanum tuberosum HOM05D000009 ORTHO05D000008 6.4e-07 57.8 99 33.3
Atru.chr13.932 Acer truncatum HOM05D000009 ORTHO05D000008 8.3e-07 57.4 65 44.6
EL10Ac1g01015 Beta vulgaris HOM05D000009 ORTHO05D000008 8.3e-07 57.4 59 47.5
MELO3C006780.2 Cucumis melo HOM05D000009 ORTHO05D000008 8.3e-07 57.4 65 38.5
FAN09G1024 Fragaria x ananassa HOM05D000009 ORTHO05D000008 8.3e-07 57.4 60 45.0
Gorai.002G026600 Gossypium raimondii HOM05D000009 ORTHO05D000008 8.3e-07 57.4 67 47.8
Peaxi162Scf00818g10014 Petunia axillaris HOM05D000009 ORTHO05D000008 8.3e-07 57.4 60 53.3
RcHm_v2.0_Chr1g0317871 Rosa chinensis HOM05D000009 ORTHO05D000008 8.3e-07 57.4 50 52.0
RcHm_v2.0_Chr4g0422461 Rosa chinensis HOM05D000009 ORTHO05D000008 8.3e-07 57.4 59 49.2
RcHm_v2.0_Chr4g0422661 Rosa chinensis HOM05D000009 ORTHO05D000008 8.3e-07 57.4 59 49.2
SalBow3G3481 Salvia bowleyana HOM05D000009 ORTHO05D000008 8.3e-07 57.4 92 37.0
MELO3C024725.2 Cucumis melo HOM05D000009 ORTHO05D000008 1.1e-06 57.0 62 43.5
CsaV3_4G003610 Cucumis sativus L. HOM05D000009 ORTHO05D000008 1.1e-06 57.0 65 44.6
FvH4_6g12200 Fragaria vesca HOM05D000009 ORTHO05D000008 1.1e-06 57.0 50 52.0
Lsat_1_v5_gn_2_26920 Lactuca sativa HOM05D000009 ORTHO05D000008 1.1e-06 57.0 47 48.9
RcHm_v2.0_Chr3g0490751 Rosa chinensis HOM05D000009 ORTHO05D000008 1.1e-06 57.0 56 50.0
PGSC0003DMG400011045 Solanum tuberosum HOM05D000009 ORTHO05D000008 1.1e-06 57.0 98 34.7
Atru.chr13.931 Acer truncatum HOM05D000009 ORTHO05D000008 1.4e-06 56.6 65 44.6
FvH4_6g12461 Fragaria vesca HOM05D000009 ORTHO05D000008 1.4e-06 56.6 57 49.1
FvH4_6g15220 Fragaria vesca HOM05D000009 ORTHO05D000008 1.4e-06 56.6 47 53.2
FAN02G1962 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.4e-06 56.6 47 53.2
Hma1.2p1_0487F.1_g163560 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 1.4e-06 56.6 51 49.0
Oeu003360.1 Olea europaea HOM05D000009 ORTHO05D000008 1.4e-06 56.6 102 33.3
RcHm_v2.0_Chr3g0490761 Rosa chinensis HOM05D000009 ORTHO05D000008 1.4e-06 56.6 56 51.8
Thecc.04G171100 Theobroma cacao HOM05D000009 ORTHO05D000008 1.4e-06 56.6 80 36.2
Cc01_g05280 Coffea canephora HOM05D000009 ORTHO05D000008 1.9e-06 56.2 55 45.5
FAN14G2122 Fragaria x ananassa HOM05D000009 ORTHO05D000008 1.9e-06 56.2 57 49.1
Gohir.A11G166500 Gossypium hirsutum HOM05D000009 ORTHO05D000008 1.9e-06 56.2 68 45.6
Lj6C186T0 Lonicera japonica HOM05D000009 ORTHO05D004635 1.9e-06 56.2 51 54.9
Potri.004G170232 Populus trichocarpa HOM05D000009 ORTHO05D000008 1.9e-06 56.2 76 40.8
Sed0008554 Sechium edule HOM05D000009 ORTHO05D000008 1.9e-06 56.2 76 34.2
Sopen10g006010 Solanum pennellii HOM05D000009 ORTHO05D000008 1.9e-06 56.2 95 33.7
Cc03_g09340 Coffea canephora HOM05D000009 ORTHO05D000008 2.4e-06 55.8 46 56.5
CsaV3_3G015800 Cucumis sativus L. HOM05D000009 ORTHO05D000008 2.4e-06 55.8 62 40.3
FAN02G2847 Fragaria x ananassa HOM05D000009 ORTHO05D000008 2.4e-06 55.8 60 46.7
Gohir.D11G172500 Gossypium hirsutum HOM05D000009 ORTHO05D000008 2.4e-06 55.8 68 45.6
Gorai.007G185200 Gossypium raimondii HOM05D000009 ORTHO05D000008 2.4e-06 55.8 68 45.6
Lsat_1_v5_gn_2_14061 Lactuca sativa HOM05D000009 ORTHO05D000008 2.4e-06 55.8 54 48.1
Lsat_1_v5_gn_2_26880 Lactuca sativa HOM05D000009 ORTHO05D000008 2.4e-06 55.8 52 46.2
Lj6A225T19 Lonicera japonica HOM05D000009 ORTHO05D004635 2.4e-06 55.8 32 78.1
MD11G1054600 Malus domestica HOM05D000009 ORTHO05D000008 2.4e-06 55.8 48 54.2
Manes.10G008200 Manihot esculenta HOM05D000009 ORTHO05D000008 2.4e-06 55.8 60 41.7
Potri.014G007600 Populus trichocarpa HOM05D000009 ORTHO05D000008 2.4e-06 55.8 63 42.9
RcHm_v2.0_Chr3g0468571 Rosa chinensis HOM05D000009 ORTHO05D000008 2.4e-06 55.8 56 51.8
RcHm_v2.0_Chr4g0414181 Rosa chinensis HOM05D000009 ORTHO05D000008 2.4e-06 55.8 63 41.3
Sopen10g034900 Solanum pennellii HOM05D000009 ORTHO05D000008 2.4e-06 55.8 90 38.9
vmacro08502 Vaccinium macrocarpon HOM05D000009 ORTHO05D000008 2.4e-06 55.8 46 54.3
MSTRG.26186 Avicennia marina HOM05D000009 ORTHO05D000008 3.2e-06 55.5 68 44.1
Cc03_g14850 Coffea canephora HOM05D000009 ORTHO05D000008 3.2e-06 55.5 50 48.0
Cc03_g14880 Coffea canephora HOM05D000009 ORTHO05D004702 3.2e-06 55.5 96 37.5
FvH4_6g15340 Fragaria vesca HOM05D000009 ORTHO05D000008 3.2e-06 55.5 53 49.1
Hma1.2p1_0177F.1_g077850 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 3.2e-06 55.5 46 52.2
Lsat_1_v5_gn_2_13981 Lactuca sativa HOM05D000009 ORTHO05D000008 3.2e-06 55.5 88 37.5
Prupe.1G163800 Prunus persica HOM05D000009 ORTHO05D000008 3.2e-06 55.5 55 49.1
QL10p057397 Quercus lobata HOM05D000009 ORTHO05D000008 3.2e-06 55.5 45 53.3
Solyc10g085460.3 Solanum lycopersicum HOM05D000009 ORTHO05D000008 3.2e-06 55.5 90 38.9
TAR636G1623 Trochodendron aralioides HOM05D000009 ORTHO05D000008 3.2e-06 55.5 57 42.1
MSTRG.20554 Avicennia marina HOM05D000009 ORTHO05D000008 4.1e-06 55.1 59 44.1
EL10Ac2g02793 Beta vulgaris HOM05D000009 ORTHO05D000008 4.1e-06 55.1 91 38.5
Gohir.D11G172900 Gossypium hirsutum HOM05D000009 ORTHO05D000008 4.1e-06 55.1 92 37.0
Hma1.2p1_0177F.1_g077860 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 4.1e-06 55.1 53 47.2
PSO210G1580 Papaver somniferum HOM05D000009 ORTHO05D000008 4.1e-06 55.1 54 48.1
QL10p035024 Quercus lobata HOM05D000009 ORTHO05D000008 4.1e-06 55.1 50 46.0
RcHm_v2.0_Chr4g0414281 Rosa chinensis HOM05D000009 ORTHO05D000008 4.1e-06 55.1 62 41.9
SalBow2G2681 Salvia bowleyana HOM05D000009 ORTHO05D000008 4.1e-06 55.1 80 37.5
SalBow3G1554 Salvia bowleyana HOM05D000009 ORTHO05D000008 4.1e-06 55.1 64 40.6
arahy.Tifrunner.gnm1.ann1.8HC6C5 Arachis hypogaea HOM05D000009 ORTHO05D000008 5.4e-06 54.7 91 33.0
arahy.Tifrunner.gnm1.ann1.VZQ2V7 Arachis hypogaea HOM05D000009 ORTHO05D000008 5.4e-06 54.7 91 33.0
CsaV3_3G040610 Cucumis sativus L. HOM05D000009 ORTHO05D000008 5.4e-06 54.7 63 44.4
CsaV3_4G003630 Cucumis sativus L. HOM05D000009 ORTHO05D000008 5.4e-06 54.7 65 44.6
Dinv22701 Davidia involucrata HOM05D000009 ORTHO05D000008 5.4e-06 54.7 63 46.0
Hma1.2p1_0349F.1_g132350 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 5.4e-06 54.7 46 50.0
Lsat_1_v5_gn_2_27321 Lactuca sativa HOM05D000009 ORTHO05D000008 5.4e-06 54.7 57 45.6
Lsat_1_v5_gn_2_27681 Lactuca sativa HOM05D000009 ORTHO05D000008 5.4e-06 54.7 57 47.4
MD05G1243400 Malus domestica HOM05D000009 ORTHO05D000008 5.4e-06 54.7 48 52.1
Nitab4.5_0008402g0030 Nicotiana tabacum HOM05D000009 ORTHO05D000008 5.4e-06 54.7 96 35.4
Potri.004G169800 Populus trichocarpa HOM05D000009 ORTHO05D000008 5.4e-06 54.7 70 38.6
QL10p054701 Quercus lobata HOM05D000009 ORTHO05D000008 5.4e-06 54.7 85 40.0
QL10p057042 Quercus lobata HOM05D000009 ORTHO05D000008 5.4e-06 54.7 63 42.9
VMungo1215G2192 Vigna mungo HOM05D000009 ORTHO05D000008 5.4e-06 54.7 46 52.2
Hma1.2p1_0177F.1_g077820 Hydrangea macrophylla HOM05D000009 ORTHO05D000008 7.1e-06 54.3 48 47.9
Lsat_1_v5_gn_2_28220 Lactuca sativa HOM05D000009 ORTHO05D000008 7.1e-06 54.3 51 49.0
Nn1g00876 Nelumbo nucifera HOM05D000009 ORTHO05D000008 7.1e-06 54.3 63 47.6
RcHm_v2.0_Chr4g0414191 Rosa chinensis HOM05D000009 ORTHO05D000008 7.1e-06 54.3 48 47.9
Sed0021683 Sechium edule HOM05D000009 ORTHO05D000008 7.1e-06 54.3 86 36.0
Duzib133G0910 Durio zibethinus HOM05D000009 ORTHO05D000008 9.2e-06 53.9 65 46.2
Migut.G00856 Erythranthe guttata HOM05D000009 ORTHO05D000008 9.2e-06 53.9 46 52.2
FvH4_6g13450 Fragaria vesca HOM05D000009 ORTHO05D000008 9.2e-06 53.9 50 52.0
MD03G1049200 Malus domestica HOM05D000009 ORTHO05D000008 9.2e-06 53.9 63 44.4
Prupe.1G163700 Prunus persica HOM05D000009 ORTHO05D000008 9.2e-06 53.9 48 50.0
RcHm_v2.0_Chr3g0467341 Rosa chinensis HOM05D000009 ORTHO05D000008 9.2e-06 53.9 54 46.3
PGSC0003DMG400019145 Solanum tuberosum HOM05D000009 ORTHO05D000008 9.2e-06 53.9 57 43.9
PGSC0003DMG402011117 Solanum tuberosum HOM05D000009 ORTHO05D000008 9.2e-06 53.9 90 36.7


User provided reference genes

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