Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P161T13 Lonicera japonica HOM05D027526 ORTHO05D002167 1.7e-63 245.7 117 100.0
Lj6P156T12 Lonicera japonica HOM05D027526 ORTHO05D002167 1.0e-55 219.9 117 94.0
Lj8A152T85 Lonicera japonica HOM05D002172 ORTHO05D002167 1.6e-40 169.5 109 80.7
Lj7C32G0 Lonicera japonica HOM05D027526 ORTHO05D002167 1.9e-22 109.4 73 76.7
Dinv20223 Davidia involucrata HOM05D002172 ORTHO05D002167 6.8e-20 100.9 113 51.3
Lj1A555T37 Lonicera japonica HOM05D027526 ORTHO05D002167 4.4e-19 98.2 71 70.4
QL08p027653 Quercus lobata HOM05D002172 ORTHO05D002167 1.9e-17 92.8 116 50.0
Thecc.07G102500 Theobroma cacao HOM05D002172 ORTHO05D002167 9.2e-17 90.5 117 47.9
Gohir.A01G059300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 1.6e-16 89.7 124 46.8
Gorai.002G064900 Gossypium raimondii HOM05D002172 ORTHO05D002167 1.6e-16 89.7 124 46.8
TAR626G1972 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.6e-16 89.7 113 48.7
Gohir.D01G045300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 2.1e-16 89.4 124 46.0
GSVIVG01014246001 Vitis vinifera HOM05D002172 ORTHO05D002167 2.1e-16 89.4 118 48.3
Duzib213G0791 Durio zibethinus HOM05D002172 ORTHO05D002167 2.7e-16 89.0 118 48.3
Duzib170G0027 Durio zibethinus HOM05D002172 ORTHO05D002167 1.7e-15 86.3 118 47.5
Cpa.g.sc131.79 Carica papaya HOM05D002172 ORTHO05D002167 6.6e-15 84.3 128 43.0
Cc05_g11490 Coffea canephora HOM05D002172 ORTHO05D002167 6.6e-15 84.3 120 44.2
PSO541G5259 Papaver somniferum HOM05D002172 ORTHO05D002167 6.6e-15 84.3 116 48.3
PSO675G6960 Papaver somniferum HOM05D002172 ORTHO05D002167 6.6e-15 84.3 116 48.3
HanXRQChr03g0070551 Helianthus annuus HOM05D002172 ORTHO05D002167 1.5e-14 83.2 117 48.7
Lj1C835T8 Lonicera japonica HOM05D002172 ORTHO05D002167 1.5e-14 83.2 109 50.5
Lsat_1_v5_gn_7_102940 Lactuca sativa HOM05D002172 ORTHO05D002167 2.5e-14 82.4 121 48.8
SalBow8G3145 Salvia bowleyana HOM05D002172 ORTHO05D002167 2.5e-14 82.4 107 50.5
Aqoxy1G02211 Aquilegia oxysepala HOM05D002172 ORTHO05D002167 7.3e-14 80.9 116 44.0
SalBow8G2046 Salvia bowleyana HOM05D002172 ORTHO05D002167 7.3e-14 80.9 107 49.5
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 7.3e-14 80.9 114 45.6
Duzib268G0924 Durio zibethinus HOM05D002172 ORTHO05D002167 9.5e-14 80.5 118 45.8
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 1.6e-13 79.7 114 45.6
CiPaw.12G115600 Carya illinoinensis HOM05D002172 ORTHO05D002167 2.1e-13 79.3 114 47.4
Cc05_g08000 Coffea canephora HOM05D002172 ORTHO05D002167 2.1e-13 79.3 117 44.4
MBI07_g17037_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 2.1e-13 79.3 109 47.7
Cfa019613 Carpinus fangiana HOM05D002172 ORTHO05D002167 8.1e-13 77.4 120 44.2
Nn1g04300 Nelumbo nucifera HOM05D002172 ORTHO05D002167 8.1e-13 77.4 116 45.7
Haze_09367 Corylus avellana HOM05D002172 ORTHO05D002167 1.1e-12 77.0 119 43.7
Nitab4.5_0000831g0030 Nicotiana tabacum HOM05D002172 ORTHO05D002167 1.4e-12 76.6 127 44.9
Nitab4.5_0000246g0100 Nicotiana tabacum HOM05D002172 ORTHO05D002167 1.8e-12 76.3 127 44.9
DCAR_021009 Daucus carota HOM05D002172 ORTHO05D002167 2.3e-12 75.9 119 45.4
Nn1g06336 Nelumbo nucifera HOM05D002172 ORTHO05D002167 2.3e-12 75.9 116 44.0
PGSC0003DMG400012436 Solanum tuberosum HOM05D002172 ORTHO05D002167 2.3e-12 75.9 118 45.8
CiPaw.11G165200 Carya illinoinensis HOM05D002172 ORTHO05D002167 3.1e-12 75.5 121 46.3
Oeu064834.1 Olea europaea HOM05D002172 ORTHO05D002167 5.2e-12 74.7 115 41.7
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 6.8e-12 74.3 99 48.5
Lsat_1_v5_gn_7_102900 Lactuca sativa HOM05D002172 ORTHO05D002167 1.2e-11 73.6 122 45.1
Gohir.D13G152600 Gossypium hirsutum HOM05D002172 ORTHO05D002167 1.5e-11 73.2 123 43.1
vmacro12360 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 1.5e-11 73.2 121 40.5
Sopen07g030940 Solanum pennellii HOM05D002172 ORTHO05D002167 2.0e-11 72.8 118 44.9
Cpa.g.sc209.8 Carica papaya HOM05D002172 ORTHO05D002167 3.4e-11 72.0 118 42.4
Gohir.A13G148000 Gossypium hirsutum HOM05D002172 ORTHO05D002167 3.4e-11 72.0 123 41.5
ClCG11G017700 Citrullus lanatus HOM05D002172 ORTHO05D002167 4.4e-11 71.6 124 40.3
Gorai.013G172500 Gossypium raimondii HOM05D002172 ORTHO05D002167 4.4e-11 71.6 123 41.5
QL08p040962 Quercus lobata HOM05D002172 ORTHO05D002167 4.4e-11 71.6 120 40.8
Sabra16G0246600 Salix brachista HOM05D002172 ORTHO05D002167 4.4e-11 71.6 142 34.5
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 5.8e-11 71.2 114 42.1
FAN16G0639 Fragaria x ananassa HOM05D002172 ORTHO05D002167 5.8e-11 71.2 144 38.9
FAN25G1327 Fragaria x ananassa HOM05D002172 ORTHO05D002167 5.8e-11 71.2 144 38.9
Gohir.D11G306300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 5.8e-11 71.2 98 45.9
Gorai.007G325700 Gossypium raimondii HOM05D002172 ORTHO05D002167 7.5e-11 70.9 98 45.9
Solyc07g062710.4 Solanum lycopersicum HOM05D002172 ORTHO05D002167 9.9e-11 70.5 118 44.1
Gohir.A11G286800 Gossypium hirsutum HOM05D002172 ORTHO05D002167 2.2e-10 69.3 98 44.9
Manes.12G091500 Manihot esculenta HOM05D002172 ORTHO05D002167 2.9e-10 68.9 130 37.7
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 3.7e-10 68.6 116 40.5
Eucgr.F03286 Eucalyptus grandis HOM05D002172 ORTHO05D002167 3.7e-10 68.6 123 40.7
Lalb_Chr14g0367281 Lupinus albus HOM05D002172 ORTHO05D002167 8.3e-10 67.4 117 39.3
Peaxi162Scf00189g00124 Petunia axillaris HOM05D002172 ORTHO05D002167 8.3e-10 67.4 116 41.4
Rhsim06G0135000 Rhododendron simsii HOM05D002172 ORTHO05D002167 1.1e-09 67.0 118 37.3
TPR.G6430 Trifolium pratense HOM05D002172 ORTHO05D002167 1.1e-09 67.0 127 39.4
CAN.G162.26 Capsicum annuum HOM05D002172 ORTHO05D002167 1.4e-09 66.6 109 44.0
MELO3C018845.2 Cucumis melo HOM05D002172 ORTHO05D002167 1.4e-09 66.6 119 42.9
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 1.4e-09 66.6 135 41.5
Potri.001G374200 Populus trichocarpa HOM05D002172 ORTHO05D002167 1.4e-09 66.6 143 32.9
Dinv03892 Davidia involucrata HOM05D002172 ORTHO05D002167 1.9e-09 66.2 121 40.5
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 1.9e-09 66.2 114 41.2
FAN11G3061 Fragaria x ananassa HOM05D002172 ORTHO05D002167 2.4e-09 65.9 144 37.5
TAR627G0822 Trochodendron aralioides HOM05D002172 ORTHO05D002167 3.2e-09 65.5 116 42.2
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 4.1e-09 65.1 111 41.4
GSVIVG01020658001 Vitis vinifera HOM05D002172 ORTHO05D002167 5.4e-09 64.7 115 43.5
Actinidia11125 Actinidia chinensis HOM05D002172 ORTHO05D002167 7.1e-09 64.3 116 37.9
RcHm_v2.0_Chr5g0031811 Rosa chinensis HOM05D002172 ORTHO05D002167 7.1e-09 64.3 134 39.6
Lsat_1_v5_gn_9_99081 Lactuca sativa HOM05D002172 ORTHO05D002167 9.2e-09 63.9 114 41.2
MSTRG.15114 Avicennia marina HOM05D002172 ORTHO05D002167 1.2e-08 63.5 133 36.8
CsaV3_7G003290 Cucumis sativus L. HOM05D002172 ORTHO05D002167 1.2e-08 63.5 118 41.5
Duzib147G1659 Durio zibethinus HOM05D002172 ORTHO05D002167 1.2e-08 63.5 129 38.0
CAN.G1543.10 Capsicum annuum HOM05D002172 ORTHO05D002167 1.6e-08 63.2 117 40.2
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.6e-08 63.2 113 45.1
SGA_v2.0_scaffold73G24212 Striga asiatica HOM05D002172 ORTHO05D002167 1.6e-08 63.2 86 44.2
Hma1.2p1_0002F.1_g002520 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 2.1e-08 62.8 123 37.4
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 2.1e-08 62.8 122 38.5
Ca_18901_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 2.7e-08 62.4 121 39.7
Ciclev10015966m.g Citrus clementina HOM05D002172 ORTHO05D002167 2.7e-08 62.4 127 37.8
Prupe.3G125500 Prunus persica HOM05D002172 ORTHO05D002167 4.6e-08 61.6 120 39.2
SHI27683 Sapria himalayana HOM05D002172 ORTHO05D002167 4.6e-08 61.6 138 31.9
Aqoxy4G00537 Aquilegia oxysepala HOM05D002172 ORTHO05D002167 6.0e-08 61.2 132 35.6
FAN21G2999 Fragaria x ananassa HOM05D002172 ORTHO05D002167 6.0e-08 61.2 144 36.1
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 6.0e-08 61.2 137 35.0
Potri.019G091900 Populus trichocarpa HOM05D002172 ORTHO05D002167 6.0e-08 61.2 122 38.5
Atru.chr6.2838 Acer truncatum HOM05D002172 ORTHO05D002167 7.8e-08 60.8 132 34.8
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 7.8e-08 60.8 102 45.1
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 7.8e-08 60.8 111 40.5
Lalb_Chr24g0400011 Lupinus albus HOM05D002172 ORTHO05D002167 1.0e-07 60.5 126 37.3
Peaxi162Scf00069g01927 Petunia axillaris HOM05D002172 ORTHO05D002167 1.0e-07 60.5 125 36.8
SGA_v2.0_scaffold34G13764 Striga asiatica HOM05D002172 ORTHO05D002167 1.3e-07 60.1 111 40.5
BcaC02g12484 Brassica carinata HOM05D002172 ORTHO05D002167 1.7e-07 59.7 121 36.4
C04p03550 Brassica napus HOM05D002172 ORTHO05D002167 1.7e-07 59.7 121 36.4
BolC4t21990H Brassica oleracea HOM05D002172 ORTHO05D002167 1.7e-07 59.7 121 36.4
BraA05t19283Z Brassica rapa HOM05D002172 ORTHO05D002167 1.7e-07 59.7 121 36.4
CDE04G1176 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.7e-07 59.7 113 42.5
Oeu051099.1 Olea europaea HOM05D002172 ORTHO05D002167 1.7e-07 59.7 90 40.0
Oeu061329.1 Olea europaea HOM05D002172 ORTHO05D002167 2.3e-07 59.3 122 39.3
TWI59G1477 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 2.3e-07 59.3 122 39.3
ClCG00G001870 Citrullus lanatus HOM05D002172 ORTHO05D002167 3.0e-07 58.9 99 41.4
ClCG02G002210 Citrullus lanatus HOM05D002172 ORTHO05D002167 3.0e-07 58.9 99 41.4
Haze_13308 Corylus avellana HOM05D002172 ORTHO05D002167 3.0e-07 58.9 127 37.0
Migut.M00759 Erythranthe guttata HOM05D002172 ORTHO05D002167 3.0e-07 58.9 116 39.7
Lj3g0023616 Lotus japonicus HOM05D002172 ORTHO05D002167 3.0e-07 58.9 97 41.2
MD11G1258200 Malus domestica HOM05D002172 ORTHO05D002167 3.0e-07 58.9 131 38.9
Phvul.011G116800 Phaseolus vulgaris HOM05D002172 ORTHO05D002167 3.0e-07 58.9 101 41.6
Sed0000931 Sechium edule HOM05D002172 ORTHO05D002167 3.0e-07 58.9 92 42.4
A03p23630 Brassica napus HOM05D002172 ORTHO05D002167 3.9e-07 58.5 119 33.6
BraA03t11579Z Brassica rapa HOM05D002172 ORTHO05D002167 3.9e-07 58.5 119 33.6
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 3.9e-07 58.5 64 53.1
Phvul.005G097800 Phaseolus vulgaris HOM05D002172 ORTHO05D002167 3.9e-07 58.5 129 38.0
FAN09G3141 Fragaria x ananassa HOM05D002172 ORTHO05D002167 6.6e-07 57.8 123 37.4
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 8.6e-07 57.4 111 36.0
Sed0008528 Sechium edule HOM05D002172 ORTHO05D002167 8.6e-07 57.4 115 40.9
Glyma.12G227700 Glycine max HOM05D002172 ORTHO05D002167 1.1e-06 57.0 90 42.2
Lalb_Chr19g0135001 Lupinus albus HOM05D002172 ORTHO05D002167 1.1e-06 57.0 90 43.3
Lalb_Chr20g0109421 Lupinus albus HOM05D002172 ORTHO05D002167 1.1e-06 57.0 89 42.7
Thecc.01G241600 Theobroma cacao HOM05D002172 ORTHO05D002167 1.5e-06 56.6 120 38.3
VMungo1127G0198 Vigna mungo HOM05D002172 ORTHO05D002167 1.5e-06 56.6 150 33.3
CDE09G0039 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 1.9e-06 56.2 116 37.9
CiPaw.03G184100 Carya illinoinensis HOM05D002172 ORTHO05D002167 2.5e-06 55.8 94 37.2
Nitab4.5_0006823g0010 Nicotiana tabacum HOM05D002172 ORTHO05D002167 2.5e-06 55.8 85 41.2
TWI38G0826 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 2.5e-06 55.8 90 43.3
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 3.3e-06 55.5 113 37.2
FAN02G0891 Fragaria x ananassa HOM05D002172 ORTHO05D002167 3.3e-06 55.5 128 34.4
Sopen07g027410 Solanum pennellii HOM05D002172 ORTHO05D002167 3.3e-06 55.5 118 36.4
Medtr2g090900 Medicago truncatula HOM05D002172 ORTHO05D002167 4.3e-06 55.1 97 41.2
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 4.3e-06 55.1 112 39.3
SalBow7G2546 Salvia bowleyana HOM05D002172 ORTHO05D002167 4.3e-06 55.1 102 37.3
Lalb_Chr03g0029801 Lupinus albus HOM05D002172 ORTHO05D002167 5.6e-06 54.7 88 43.2
Manes.15G090700 Manihot esculenta HOM05D002172 ORTHO05D002167 5.6e-06 54.7 80 38.8
A09p50900 Brassica napus HOM05D002172 ORTHO05D002167 7.3e-06 54.3 96 38.5
CANSAT64G0015 Cannabis sativa HOM05D002172 ORTHO05D002167 7.3e-06 54.3 134 35.1
Eucgr.K01085 Eucalyptus grandis HOM05D002172 ORTHO05D002167 7.3e-06 54.3 100 38.0
MD03G1237600 Malus domestica HOM05D002172 ORTHO05D002167 7.3e-06 54.3 130 36.2
MD09G1240900 Malus domestica HOM05D002172 ORTHO05D002167 7.3e-06 54.3 134 32.1
Sed0014927 Sechium edule HOM05D002172 ORTHO05D002167 7.3e-06 54.3 97 40.2
MELO3C025623.2 Cucumis melo HOM05D002172 ORTHO05D002167 9.5e-06 53.9 98 36.7
Lalb_Chr25g0286131 Lupinus albus HOM05D002172 ORTHO05D002167 9.5e-06 53.9 116 35.3


User provided reference genes

Program Settings