Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6P156T12 Lonicera japonica HOM05D027526 ORTHO05D002167 4.6e-61 237.7 116 100.0
Lj6P161T13 Lonicera japonica HOM05D027526 ORTHO05D002167 5.8e-56 220.7 117 94.0
Lj8A152T85 Lonicera japonica HOM05D002172 ORTHO05D002167 1.3e-34 149.8 109 75.2
Lj7C32G0 Lonicera japonica HOM05D027526 ORTHO05D002167 5.5e-22 107.8 73 75.3
Lj1A555T37 Lonicera japonica HOM05D027526 ORTHO05D002167 1.3e-18 96.7 71 69.0
Thecc.07G102500 Theobroma cacao HOM05D002172 ORTHO05D002167 4.8e-18 94.7 116 48.3
Gohir.A01G059300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 8.3e-18 94.0 123 47.2
Gorai.002G064900 Gossypium raimondii HOM05D002172 ORTHO05D002167 8.3e-18 94.0 123 47.2
Gohir.D01G045300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 1.1e-17 93.6 123 46.3
Dinv20223 Davidia involucrata HOM05D002172 ORTHO05D002167 1.8e-17 92.8 112 49.1
GSVIVG01014246001 Vitis vinifera HOM05D002172 ORTHO05D002167 4.1e-17 91.7 118 49.2
Duzib170G0027 Durio zibethinus HOM05D002172 ORTHO05D002167 9.1e-17 90.5 117 47.9
QL08p027653 Quercus lobata HOM05D002172 ORTHO05D002167 9.1e-17 90.5 117 50.4
TAR626G1972 Trochodendron aralioides HOM05D002172 ORTHO05D002167 5.9e-16 87.8 112 48.2
PSO541G5259 Papaver somniferum HOM05D002172 ORTHO05D002167 1.0e-15 87.0 115 49.6
PSO675G6960 Papaver somniferum HOM05D002172 ORTHO05D002167 1.0e-15 87.0 115 49.6
Duzib213G0791 Durio zibethinus HOM05D002172 ORTHO05D002167 1.7e-15 86.3 116 47.4
Lj1C835T8 Lonicera japonica HOM05D002172 ORTHO05D002167 2.2e-15 85.9 108 50.0
Duzib268G0924 Durio zibethinus HOM05D002172 ORTHO05D002167 5.0e-15 84.7 117 46.2
HanXRQChr03g0070551 Helianthus annuus HOM05D002172 ORTHO05D002167 1.5e-14 83.2 117 47.0
Cpa.g.sc131.79 Carica papaya HOM05D002172 ORTHO05D002167 1.9e-14 82.8 128 43.0
Lsat_1_v5_gn_7_102940 Lactuca sativa HOM05D002172 ORTHO05D002167 1.9e-14 82.8 121 47.9
Cc05_g08000 Coffea canephora HOM05D002172 ORTHO05D002167 3.2e-14 82.0 116 44.0
Cfa019613 Carpinus fangiana HOM05D002172 ORTHO05D002167 4.2e-14 81.6 119 44.5
Cc05_g11490 Coffea canephora HOM05D002172 ORTHO05D002167 5.5e-14 81.3 120 43.3
Haze_09367 Corylus avellana HOM05D002172 ORTHO05D002167 5.5e-14 81.3 118 44.1
SalBow8G3145 Salvia bowleyana HOM05D002172 ORTHO05D002167 5.5e-14 81.3 106 48.1
CiPaw.12G115600 Carya illinoinensis HOM05D002172 ORTHO05D002167 9.4e-14 80.5 112 46.4
SalBow8G2046 Salvia bowleyana HOM05D002172 ORTHO05D002167 1.6e-13 79.7 106 47.2
Aqoxy1G02211 Aquilegia oxysepala HOM05D002172 ORTHO05D002167 2.7e-13 79.0 115 43.5
TAR624G0577 Trochodendron aralioides HOM05D002172 ORTHO05D002167 2.7e-13 79.0 113 45.1
Nitab4.5_0000831g0030 Nicotiana tabacum HOM05D002172 ORTHO05D002167 4.7e-13 78.2 127 44.9
MBI07_g17037_MAGBIO Magnolia biondii HOM05D002172 ORTHO05D002167 6.1e-13 77.8 108 45.4
TAR624G0475 Trochodendron aralioides HOM05D002172 ORTHO05D002167 6.1e-13 77.8 113 45.1
Nn1g06336 Nelumbo nucifera HOM05D002172 ORTHO05D002167 8.0e-13 77.4 115 45.2
Gohir.D13G152600 Gossypium hirsutum HOM05D002172 ORTHO05D002167 1.0e-12 77.0 122 43.4
CiPaw.11G165200 Carya illinoinensis HOM05D002172 ORTHO05D002167 1.4e-12 76.6 119 45.4
PGSC0003DMG400012436 Solanum tuberosum HOM05D002172 ORTHO05D002167 1.4e-12 76.6 118 44.1
Nitab4.5_0000246g0100 Nicotiana tabacum HOM05D002172 ORTHO05D002167 1.8e-12 76.3 127 44.1
Gohir.A13G148000 Gossypium hirsutum HOM05D002172 ORTHO05D002167 2.3e-12 75.9 122 41.8
Sopen07g030940 Solanum pennellii HOM05D002172 ORTHO05D002167 2.3e-12 75.9 118 44.1
MELO3C018845.2 Cucumis melo HOM05D002172 ORTHO05D002167 3.0e-12 75.5 118 44.1
DCAR_021009 Daucus carota HOM05D002172 ORTHO05D002167 3.0e-12 75.5 120 45.0
Gorai.013G172500 Gossypium raimondii HOM05D002172 ORTHO05D002167 3.0e-12 75.5 122 41.8
Lsat_1_v5_gn_7_102900 Lactuca sativa HOM05D002172 ORTHO05D002167 8.8e-12 73.9 122 44.3
Oeu064834.1 Olea europaea HOM05D002172 ORTHO05D002167 1.2e-11 73.6 114 40.4
Solyc07g062710.4 Solanum lycopersicum HOM05D002172 ORTHO05D002167 1.2e-11 73.6 118 43.2
Nn1g04300 Nelumbo nucifera HOM05D002172 ORTHO05D002167 2.0e-11 72.8 115 44.3
CsaV3_7G003290 Cucumis sativus L. HOM05D002172 ORTHO05D002167 2.6e-11 72.4 117 42.7
QL08p040962 Quercus lobata HOM05D002172 ORTHO05D002167 4.4e-11 71.6 120 40.8
HanXRQChr03g0071001 Helianthus annuus HOM05D002172 ORTHO05D002167 5.7e-11 71.2 101 47.5
Sabra16G0246600 Salix brachista HOM05D002172 ORTHO05D002167 7.5e-11 70.9 142 33.8
CAN.G162.26 Capsicum annuum HOM05D002172 ORTHO05D002167 9.8e-11 70.5 109 45.0
FAN16G0639 Fragaria x ananassa HOM05D002172 ORTHO05D002167 9.8e-11 70.5 144 37.5
FAN25G1327 Fragaria x ananassa HOM05D002172 ORTHO05D002167 9.8e-11 70.5 144 37.5
CSS0009595 Camellia sinensis var. sinensis HOM05D002172 ORTHO05D002167 1.3e-10 70.1 113 40.7
Peaxi162Scf00189g00124 Petunia axillaris HOM05D002172 ORTHO05D002167 1.3e-10 70.1 116 40.5
Lalb_Chr14g0367281 Lupinus albus HOM05D002172 ORTHO05D002167 1.7e-10 69.7 117 40.2
ECA240G3701 Erigeron canadensis HOM05D002172 ORTHO05D002167 2.2e-10 69.3 110 42.7
Gohir.D11G306300 Gossypium hirsutum HOM05D002172 ORTHO05D002167 2.8e-10 68.9 107 42.1
Manes.13G139500 Manihot esculenta HOM05D002172 ORTHO05D002167 2.8e-10 68.9 135 40.7
ClCG11G017700 Citrullus lanatus HOM05D002172 ORTHO05D002167 3.7e-10 68.6 123 37.4
Ciclev10015966m.g Citrus clementina HOM05D002172 ORTHO05D002167 3.7e-10 68.6 126 38.9
Dinv03892 Davidia involucrata HOM05D002172 ORTHO05D002167 3.7e-10 68.6 120 40.0
Gorai.007G325700 Gossypium raimondii HOM05D002172 ORTHO05D002167 3.7e-10 68.6 96 44.8
Actinidia10984 Actinidia chinensis HOM05D002172 ORTHO05D002167 4.8e-10 68.2 116 40.5
Ca_18901_v3 Cicer arietinum L. HOM05D002172 ORTHO05D002167 4.8e-10 68.2 120 41.7
Aqoxy4G00537 Aquilegia oxysepala HOM05D002172 ORTHO05D002167 6.3e-10 67.8 131 37.4
Potri.001G374200 Populus trichocarpa HOM05D002172 ORTHO05D002167 6.3e-10 67.8 143 32.9
TAR627G0822 Trochodendron aralioides HOM05D002172 ORTHO05D002167 6.3e-10 67.8 115 43.5
Manes.12G091500 Manihot esculenta HOM05D002172 ORTHO05D002167 8.3e-10 67.4 130 37.7
Gohir.A11G286800 Gossypium hirsutum HOM05D002172 ORTHO05D002167 1.1e-09 67.0 107 41.1
Cpa.g.sc209.8 Carica papaya HOM05D002172 ORTHO05D002167 1.4e-09 66.6 120 40.8
vmacro12360 Vaccinium macrocarpon HOM05D002172 ORTHO05D002167 1.4e-09 66.6 121 39.7
Eucgr.F03286 Eucalyptus grandis HOM05D002172 ORTHO05D002167 1.8e-09 66.2 124 39.5
TPR.G6430 Trifolium pratense HOM05D002172 ORTHO05D002167 2.4e-09 65.9 127 38.6
SHI27683 Sapria himalayana HOM05D002172 ORTHO05D002167 5.4e-09 64.7 138 32.6
GSVIVG01020658001 Vitis vinifera HOM05D002172 ORTHO05D002167 5.4e-09 64.7 115 42.6
FAN11G3061 Fragaria x ananassa HOM05D002172 ORTHO05D002167 7.0e-09 64.3 144 36.1
Prupe.3G125500 Prunus persica HOM05D002172 ORTHO05D002167 7.0e-09 64.3 118 38.1
TWI23G0692 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 7.0e-09 64.3 121 37.2
Atru.chr6.2838 Acer truncatum HOM05D002172 ORTHO05D002167 9.1e-09 63.9 132 37.1
Actinidia11125 Actinidia chinensis HOM05D002172 ORTHO05D002167 9.1e-09 63.9 116 37.9
MSTRG.15114 Avicennia marina HOM05D002172 ORTHO05D002167 9.1e-09 63.9 133 35.3
CDE09G0039 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 9.1e-09 63.9 116 39.7
Lalb_Chr24g0400011 Lupinus albus HOM05D002172 ORTHO05D002167 9.1e-09 63.9 126 38.1
RcHm_v2.0_Chr5g0031811 Rosa chinensis HOM05D002172 ORTHO05D002167 9.1e-09 63.9 94 46.8
SGA_v2.0_scaffold34G13764 Striga asiatica HOM05D002172 ORTHO05D002167 9.1e-09 63.9 110 41.8
Peaxi162Scf00069g01927 Petunia axillaris HOM05D002172 ORTHO05D002167 1.6e-08 63.2 125 36.8
Rhsim06G0135000 Rhododendron simsii HOM05D002172 ORTHO05D002167 2.0e-08 62.8 118 36.4
Phvul.005G097800 Phaseolus vulgaris HOM05D002172 ORTHO05D002167 2.7e-08 62.4 129 38.8
Haze_13308 Corylus avellana HOM05D002172 ORTHO05D002167 3.5e-08 62.0 127 37.8
FAN09G3141 Fragaria x ananassa HOM05D002172 ORTHO05D002167 3.5e-08 62.0 123 38.2
HanXRQChr13g0391241 Helianthus annuus HOM05D002172 ORTHO05D002167 3.5e-08 62.0 101 43.6
CAN.G1543.10 Capsicum annuum HOM05D002172 ORTHO05D002167 4.5e-08 61.6 117 39.3
Duzib147G1659 Durio zibethinus HOM05D002172 ORTHO05D002167 4.5e-08 61.6 128 37.5
Oeu051099.1 Olea europaea HOM05D002172 ORTHO05D002167 4.5e-08 61.6 87 41.4
SGA_v2.0_scaffold73G24212 Striga asiatica HOM05D002172 ORTHO05D002167 5.9e-08 61.2 108 38.9
HPP92_005197 Vanilla planifolia HOM05D002172 ORTHO05D002167 5.9e-08 61.2 110 40.9
CDE03G0342 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 7.7e-08 60.8 112 45.5
ClCG00G001870 Citrullus lanatus HOM05D002172 ORTHO05D002167 7.7e-08 60.8 99 42.4
ClCG02G002210 Citrullus lanatus HOM05D002172 ORTHO05D002167 7.7e-08 60.8 99 42.4
unitig_46.g18313 Utricularia gibba HOM05D002172 ORTHO05D002167 7.7e-08 60.8 99 39.4
Lj3g0023616 Lotus japonicus HOM05D002172 ORTHO05D002167 1.0e-07 60.5 97 42.3
Oeu061329.1 Olea europaea HOM05D002172 ORTHO05D002167 1.3e-07 60.1 121 37.2
FAN21G2999 Fragaria x ananassa HOM05D002172 ORTHO05D002167 1.7e-07 59.7 144 34.7
Glyma.12G227700 Glycine max HOM05D002172 ORTHO05D002167 1.7e-07 59.7 109 41.3
Lalb_Chr25g0286131 Lupinus albus HOM05D002172 ORTHO05D002167 2.3e-07 59.3 116 37.1
MD11G1258200 Malus domestica HOM05D002172 ORTHO05D002167 2.3e-07 59.3 131 36.6
TWI59G1477 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 2.3e-07 59.3 122 38.5
Lalb_Chr19g0135001 Lupinus albus HOM05D002172 ORTHO05D002167 2.9e-07 58.9 90 44.4
Rhsim06G0204100 Rhododendron simsii HOM05D002172 ORTHO05D002167 2.9e-07 58.9 114 39.5
Sed0014927 Sechium edule HOM05D002172 ORTHO05D002167 2.9e-07 58.9 120 38.3
CANSAT64G0015 Cannabis sativa HOM05D002172 ORTHO05D002167 3.8e-07 58.5 134 38.1
FAN02G0891 Fragaria x ananassa HOM05D002172 ORTHO05D002167 3.8e-07 58.5 128 35.2
Manes.03G103800 Manihot esculenta HOM05D002172 ORTHO05D002167 3.8e-07 58.5 139 32.4
Potri.019G091900 Populus trichocarpa HOM05D002172 ORTHO05D002167 5.0e-07 58.2 122 36.9
CiPaw.03G184100 Carya illinoinensis HOM05D002172 ORTHO05D002167 6.6e-07 57.8 94 38.3
Dinv19980 Davidia involucrata HOM05D002172 ORTHO05D002167 6.6e-07 57.8 112 36.6
Lsat_1_v5_gn_9_99081 Lactuca sativa HOM05D002172 ORTHO05D002167 6.6e-07 57.8 116 40.5
Sed0000931 Sechium edule HOM05D002172 ORTHO05D002167 6.6e-07 57.8 92 41.3
Phvul.011G116800 Phaseolus vulgaris HOM05D002172 ORTHO05D002167 8.6e-07 57.4 101 40.6
Sed0008528 Sechium edule HOM05D002172 ORTHO05D002167 8.6e-07 57.4 115 41.7
Hma1.2p1_0002F.1_g002520 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 1.1e-06 57.0 122 35.2
Hma1.2p1_0416F.1_g148590 Hydrangea macrophylla HOM05D002172 ORTHO05D002167 1.1e-06 57.0 64 51.6
Medtr2g090900 Medicago truncatula HOM05D002172 ORTHO05D002167 1.1e-06 57.0 97 42.3
Cfa014691 Carpinus fangiana HOM05D002172 ORTHO05D002167 1.5e-06 56.6 130 34.6
Lalb_Chr03g0029801 Lupinus albus HOM05D002172 ORTHO05D002167 1.5e-06 56.6 88 44.3
MD09G1240900 Malus domestica HOM05D002172 ORTHO05D002167 1.5e-06 56.6 134 32.8
FvH4_6g26970 Fragaria vesca HOM05D002172 ORTHO05D002167 1.9e-06 56.2 130 35.4
FAN14G4401 Fragaria x ananassa HOM05D002172 ORTHO05D002167 1.9e-06 56.2 130 35.4
Thecc.01G241600 Theobroma cacao HOM05D002172 ORTHO05D002167 1.9e-06 56.2 119 37.0
FAN05G0650 Fragaria x ananassa HOM05D002172 ORTHO05D002167 2.5e-06 55.8 128 35.2
Os01g0211800 Oryza sativa ssp. japonica HOM05D002172 ORTHO05D002167 2.5e-06 55.8 110 35.5
Potri.013G124400 Populus trichocarpa HOM05D002172 ORTHO05D002167 2.5e-06 55.8 110 36.4
Lalb_Chr20g0109421 Lupinus albus HOM05D002172 ORTHO05D002167 3.3e-06 55.5 89 41.6
VMungo1127G0198 Vigna mungo HOM05D002172 ORTHO05D002167 3.3e-06 55.5 150 32.0
CDE04G1176 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 4.2e-06 55.1 112 38.4
Migut.M00759 Erythranthe guttata HOM05D002172 ORTHO05D002167 4.2e-06 55.1 115 39.1
CDE02G3937 Ceratophyllum demersum HOM05D002172 ORTHO05D002167 7.2e-06 54.3 115 35.7
Nitab4.5_0006823g0010 Nicotiana tabacum HOM05D002172 ORTHO05D002167 7.2e-06 54.3 85 40.0
Sopen07g027410 Solanum pennellii HOM05D002172 ORTHO05D002167 7.2e-06 54.3 118 36.4
MD17G1233900 Malus domestica HOM05D002172 ORTHO05D002167 9.5e-06 53.9 130 31.5
Peaxi162Scf00384g00069 Petunia axillaris HOM05D002172 ORTHO05D002167 9.5e-06 53.9 112 37.5
TWI38G0826 Tripterygium wilfordii HOM05D002172 ORTHO05D002167 9.5e-06 53.9 90 42.2


User provided reference genes

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