Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C95T3 Lonicera japonica HOM05D018958 ORTHO05D000167 6.9e-101 370.5 174 100.0
Lj6A88T9 Lonicera japonica HOM05D018958 ORTHO05D000167 2.2e-75 285.8 173 80.3
Lj1C222T2 Lonicera japonica HOM05D000003 ORTHO05D000004 6.1e-49 198.0 183 57.4
Lj6A354G19 Lonicera japonica HOM05D018958 ORTHO05D000167 1.5e-42 176.8 132 62.9
Lj6P349T18 Lonicera japonica HOM05D000003 ORTHO05D000004 4.2e-42 175.3 109 73.4
Lj9P485T48 Lonicera japonica HOM05D018958 ORTHO05D000167 4.4e-23 112.1 82 62.2
Lj1C1011T5 Lonicera japonica HOM05D018958 ORTHO05D000167 1.1e-21 107.5 56 83.9
Lj9P2T15 Lonicera japonica HOM05D000003 ORTHO05D000167 2.0e-20 103.2 155 34.8
Lj4C877T10 Lonicera japonica HOM05D000003 ORTHO05D000167 2.7e-20 102.8 152 33.6
Lj4C754G7 Lonicera japonica HOM05D000003 ORTHO05D000167 1.2e-17 94.0 174 29.9
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 8.9e-16 87.8 84 44.0
Lj8C225G9 Lonicera japonica HOM05D000003 ORTHO05D000004 2.0e-15 86.7 81 49.4
Manes.16G107751 Manihot esculenta HOM05D000003 ORTHO05D000004 2.0e-15 86.7 165 30.9
TWI56G1451 Tripterygium wilfordii HOM05D000003 ORTHO05D000167 3.4e-15 85.9 152 32.9
Lj1A1011T54 Lonicera japonica HOM05D000003 ORTHO05D000167 4.4e-15 85.5 198 26.3
Manes.15G185801 Manihot esculenta HOM05D000003 ORTHO05D000167 2.9e-14 82.8 169 29.0
Manes.05G188350 Manihot esculenta HOM05D000003 ORTHO05D000004 4.9e-14 82.0 184 27.7
Lj2P248T48 Lonicera japonica HOM05D000003 ORTHO05D020832 1.1e-13 80.9 77 48.1
Manes.10G073050 Manihot esculenta HOM05D000003 ORTHO05D000167 1.4e-13 80.5 182 29.1
Manes.15G179404 Manihot esculenta HOM05D000003 ORTHO05D000167 1.8e-13 80.1 148 29.1
CANSAT01G2972 Cannabis sativa HOM05D000003 ORTHO05D000004 2.4e-13 79.7 134 33.6
Lj9C481T2 Lonicera japonica HOM05D000003 ORTHO05D000004 2.4e-13 79.7 87 43.7
CANSAT25G1969 Cannabis sativa HOM05D000003 ORTHO05D000004 3.2e-13 79.3 232 26.3
Lj2P1018T21 Lonicera japonica HOM05D000003 ORTHO05D000167 4.1e-13 79.0 96 37.5
Lj6P43T37 Lonicera japonica HOM05D000003 ORTHO05D000004 5.4e-13 78.6 99 35.4
Lj4C411T5 Lonicera japonica HOM05D000003 ORTHO05D000167 7.0e-13 78.2 84 44.0
Lj4C747T2 Lonicera japonica HOM05D000003 ORTHO05D000004 1.2e-12 77.4 77 44.2
Lj4P801T19 Lonicera japonica HOM05D000003 ORTHO05D000004 1.2e-12 77.4 138 34.8
Lj1C134T2 Lonicera japonica HOM05D000003 ORTHO05D000167 2.0e-12 76.6 74 44.6
Lj6C57T5 Lonicera japonica HOM05D000073 ORTHO05D000033 2.7e-12 76.3 85 41.2
Manes.12G101201 Manihot esculenta HOM05D000003 ORTHO05D000004 2.7e-12 76.3 195 26.2
Lj8C245T10 Lonicera japonica HOM05D000003 ORTHO05D000167 3.5e-12 75.9 100 35.0
CANSAT21G1403 Cannabis sativa HOM05D000003 ORTHO05D000004 4.6e-12 75.5 169 28.4
CANSAT01G1654 Cannabis sativa HOM05D000003 ORTHO05D000004 1.0e-11 74.3 104 32.7
CANSAT21G0177 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-11 73.9 149 27.5
CANSAT56G0533 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-11 73.2 108 33.3
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-11 73.2 104 32.7
Manes.10G125312 Manihot esculenta HOM05D000003 ORTHO05D000167 2.3e-11 73.2 198 24.7
CANSAT21G1723 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-11 72.8 160 26.9
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 3.0e-11 72.8 104 32.7
CANSAT64G0681 Cannabis sativa HOM05D000003 ORTHO05D000167 3.0e-11 72.8 140 30.0
CANSAT64G0950 Cannabis sativa HOM05D000003 ORTHO05D000167 3.9e-11 72.4 140 29.3
CANSAT25G2465 Cannabis sativa HOM05D000003 ORTHO05D000167 5.0e-11 72.0 104 30.8
CANSAT78G2124 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-11 72.0 167 28.7
CANSAT56G4532 Cannabis sativa HOM05D000003 ORTHO05D000167 6.6e-11 71.6 92 34.8
Lj8C26T8 Lonicera japonica HOM05D000003 ORTHO05D000004 6.6e-11 71.6 90 36.7
CANSAT35G1919 Cannabis sativa HOM05D000003 ORTHO05D000004 8.6e-11 71.2 193 25.9
CANSAT80G0065 Cannabis sativa HOM05D000003 ORTHO05D000004 8.6e-11 71.2 133 30.8
Lj3P442T6 Lonicera japonica HOM05D000003 ORTHO05D000004 8.6e-11 71.2 100 31.0
CANSAT56G0362 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-10 70.9 223 27.8
Lj7C484T13 Lonicera japonica HOM05D000003 ORTHO05D000167 1.5e-10 70.5 88 36.4
CANSAT56G4250 Cannabis sativa HOM05D000003 ORTHO05D000004 1.9e-10 70.1 132 27.3
Lj2P267T18 Lonicera japonica HOM05D000003 ORTHO05D000167 1.9e-10 70.1 87 36.8
CANSAT01G2533 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-10 69.7 96 32.3
Lj3P825T21 Lonicera japonica HOM05D018958 ORTHO05D000167 2.5e-10 69.7 76 43.4
CANSAT21G2540 Cannabis sativa HOM05D000003 ORTHO05D000167 3.3e-10 69.3 170 24.7
CANSAT56G3299 Cannabis sativa HOM05D000003 ORTHO05D000167 3.3e-10 69.3 90 34.4
CANSAT64G1654 Cannabis sativa HOM05D000003 ORTHO05D000004 3.3e-10 69.3 170 28.2
CANSAT11G1896 Cannabis sativa HOM05D000003 ORTHO05D000167 4.3e-10 68.9 101 30.7
CANSAT78G2359 Cannabis sativa HOM05D000003 ORTHO05D000167 4.3e-10 68.9 159 27.7
CANSAT21G1748 Cannabis sativa HOM05D000003 ORTHO05D000167 7.3e-10 68.2 85 36.5
CANSAT54G3015 Cannabis sativa HOM05D000003 ORTHO05D000167 7.3e-10 68.2 128 28.1
CANSAT54G1259 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-10 67.8 175 23.4
CANSAT35G0207 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-09 67.4 85 37.6
CANSAT56G1552 Cannabis sativa HOM05D000003 ORTHO05D000004 1.2e-09 67.4 238 21.8
CANSAT78G0561 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-09 67.4 96 33.3
CANSAT78G1083 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-09 67.0 92 35.9
Lj5P270T39 Lonicera japonica HOM05D000003 ORTHO05D000004 1.6e-09 67.0 66 42.4
CANSAT11G0192 Cannabis sativa HOM05D000003 ORTHO05D000004 2.1e-09 66.6 153 26.8
CANSAT21G2614 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-09 66.6 158 24.7
TPR.G31700 Trifolium pratense HOM05D000003 ORTHO05D000004 2.1e-09 66.6 90 33.3
CANSAT11G1313 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-09 66.2 75 36.0
CANSAT25G1903 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-09 66.2 90 31.1
CANSAT54G3006 Cannabis sativa HOM05D000003 ORTHO05D000167 2.8e-09 66.2 94 31.9
CANSAT11G2301 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-09 65.9 204 22.5
CANSAT25G0172 Cannabis sativa HOM05D000003 ORTHO05D000167 3.6e-09 65.9 161 28.0
CANSAT64G1116 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-09 65.9 160 31.2
CANSAT56G1334 Cannabis sativa HOM05D000003 ORTHO05D000167 4.7e-09 65.5 99 33.3
CANSAT64G2500 Cannabis sativa HOM05D000003 ORTHO05D000167 4.7e-09 65.5 99 32.3
Lj2P382T20 Lonicera japonica HOM05D018958 ORTHO05D000167 4.7e-09 65.5 74 37.8
Lj2P99T51 Lonicera japonica HOM05D014440 ORTHO05D000167 4.7e-09 65.5 90 33.3
CANSAT21G0488 Cannabis sativa HOM05D000003 ORTHO05D000004 6.2e-09 65.1 160 25.6
CANSAT56G4436 Cannabis sativa HOM05D000003 ORTHO05D000004 8.0e-09 64.7 184 21.7
CANSAT01G2456 Cannabis sativa HOM05D000003 ORTHO05D000167 1.1e-08 64.3 92 34.8
CANSAT21G0505 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-08 63.9 91 38.5
CANSAT21G2319 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-08 63.9 136 26.5
CANSAT56G0879 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-08 63.9 99 32.3
CANSAT56G1073 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-08 63.9 81 34.6
CANSAT56G2867 Cannabis sativa HOM05D000003 ORTHO05D000167 1.4e-08 63.9 164 27.4
CANSAT80G1540 Cannabis sativa HOM05D000003 ORTHO05D000004 1.4e-08 63.9 94 29.8
CANSAT01G2780 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-08 63.5 136 27.2
CANSAT78G0730 Cannabis sativa HOM05D000003 ORTHO05D000004 1.8e-08 63.5 163 27.6
CANSAT78G1445 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-08 63.5 163 28.2
RcHm_v2.0_Chr3g0481921 Rosa chinensis HOM05D000003 ORTHO05D000004 1.8e-08 63.5 89 31.5
CANSAT54G1785 Cannabis sativa HOM05D000003 ORTHO05D000167 2.3e-08 63.2 85 32.9
CANSAT01G2325 Cannabis sativa HOM05D000003 ORTHO05D000167 3.1e-08 62.8 85 34.1
CANSAT56G0969 Cannabis sativa HOM05D000003 ORTHO05D000167 3.1e-08 62.8 163 25.8
CANSAT64G2253 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-08 62.8 90 35.6
CANSAT78G0894 Cannabis sativa HOM05D000003 ORTHO05D000167 3.1e-08 62.8 219 23.7
Lj2C969T7 Lonicera japonica HOM05D000003 ORTHO05D000004 3.1e-08 62.8 167 21.6
CANSAT01G2797 Cannabis sativa HOM05D000003 ORTHO05D000167 4.0e-08 62.4 151 28.5
CANSAT56G2299 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-08 62.4 154 26.0
CANSAT80G0272 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-08 62.4 153 26.8
SHI39371 Sapria himalayana HOM05D000003 ORTHO05D000167 4.0e-08 62.4 127 26.8
CANSAT13G0006 Cannabis sativa HOM05D000003 ORTHO05D000167 5.2e-08 62.0 134 29.1
CANSAT25G2489 Cannabis sativa HOM05D000003 ORTHO05D000167 5.2e-08 62.0 158 26.6
CANSAT80G1560 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-08 62.0 99 32.3
Lj4C842T3 Lonicera japonica HOM05D000003 ORTHO05D000167 5.2e-08 62.0 146 30.1
Atru.chr10.527 Acer truncatum HOM05D000003 ORTHO05D000004 6.8e-08 61.6 126 34.1
CANSAT21G2373 Cannabis sativa HOM05D000003 ORTHO05D000167 6.8e-08 61.6 162 25.9
CANSAT25G3179 Cannabis sativa HOM05D000003 ORTHO05D000167 6.8e-08 61.6 128 26.6
CANSAT56G3885 Cannabis sativa HOM05D000003 ORTHO05D000167 6.8e-08 61.6 167 26.9
CANSAT78G2528 Cannabis sativa HOM05D000003 ORTHO05D000167 6.8e-08 61.6 88 31.8
CANSAT80G0189 Cannabis sativa HOM05D000003 ORTHO05D000167 6.8e-08 61.6 96 32.3
CANSAT80G0435 Cannabis sativa HOM05D000003 ORTHO05D000167 6.8e-08 61.6 83 36.1
CANSAT54G1106 Cannabis sativa HOM05D000003 ORTHO05D000004 8.9e-08 61.2 87 34.5
CANSAT80G2664 Cannabis sativa HOM05D000003 ORTHO05D000167 8.9e-08 61.2 144 24.3
Lju926C12G8 Lonicera japonica HOM05D000003 ORTHO05D000004 8.9e-08 61.2 76 38.2
CANSAT64G2653 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-07 60.8 127 28.3
Lj3A33T10 Lonicera japonica HOM05D057088 ORTHO05D000167 1.2e-07 60.8 94 34.0
Manes.10G106150 Manihot esculenta HOM05D000003 ORTHO05D000004 1.2e-07 60.8 167 28.7
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 1.2e-07 60.8 174 29.3
CANSAT54G1182 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-07 60.5 75 34.7
CANSAT56G2172 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-07 60.5 85 30.6
CANSAT56G4021 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-07 60.5 97 28.9
CANSAT64G0262 Cannabis sativa HOM05D000003 ORTHO05D000167 1.5e-07 60.5 177 24.9
CANSAT80G0248 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-07 60.5 214 23.8
CANSAT56G1530 Cannabis sativa HOM05D000003 ORTHO05D000167 2.6e-07 59.7 162 27.2
CANSAT01G0905 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-07 59.3 173 27.7
CANSAT56G2362 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-07 59.3 136 25.7
CANSAT80G1825 Cannabis sativa HOM05D000003 ORTHO05D000167 3.4e-07 59.3 95 34.7
Lj1C50T12 Lonicera japonica HOM05D000003 ORTHO05D000004 4.4e-07 58.9 54 40.7
Lj2P945T11 Lonicera japonica HOM05D021412 ORTHO05D000167 5.8e-07 58.5 88 27.3
CANSAT01G1615 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-07 58.2 149 25.5
CANSAT54G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-07 58.2 241 24.1
CANSAT64G0360 Cannabis sativa HOM05D000003 ORTHO05D000004 7.5e-07 58.2 79 30.4
Lj1g0027700 Lotus japonicus HOM05D000003 ORTHO05D025264 7.5e-07 58.2 107 29.0
Nn6g35689 Nelumbo nucifera HOM05D000003 ORTHO05D000004 7.5e-07 58.2 229 23.6
CANSAT78G0387 Cannabis sativa HOM05D000003 ORTHO05D000167 9.8e-07 57.8 149 24.8
Lj1g0000828 Lotus japonicus HOM05D000003 ORTHO05D000167 9.8e-07 57.8 148 29.7
CANSAT21G1260 Cannabis sativa HOM05D000003 ORTHO05D000167 1.3e-06 57.4 165 24.2
CANSAT01G1250 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-06 57.0 107 34.6
CANSAT64G0723 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 57.0 155 29.7
CANSAT78G0193 Cannabis sativa HOM05D000003 ORTHO05D000167 1.7e-06 57.0 83 31.3
CANSAT80G0199 Cannabis sativa HOM05D000003 ORTHO05D000004 1.7e-06 57.0 99 28.3
CANSAT25G2525 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 56.6 84 35.7
CANSAT25G3211 Cannabis sativa HOM05D000003 ORTHO05D000167 2.2e-06 56.6 165 24.8
CANSAT56G2204 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 56.6 84 31.0
CANSAT80G2861 Cannabis sativa HOM05D000003 ORTHO05D000004 2.2e-06 56.6 164 27.4
Lj1g0015020 Lotus japonicus HOM05D000003 ORTHO05D001406 2.2e-06 56.6 137 25.5
FvH4_1g25610 Fragaria vesca HOM05D000003 ORTHO05D000004 2.9e-06 56.2 164 27.4
Lju897C2T1 Lonicera japonica HOM05D000003 ORTHO05D000126 2.9e-06 56.2 135 28.1
Atru.chr4.3089 Acer truncatum HOM05D000003 ORTHO05D000126 3.7e-06 55.8 85 29.4
CANSAT35G1149 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-06 55.8 87 32.2
CANSAT35G1274 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-06 55.8 184 22.3
TAR351G0004 Trochodendron aralioides HOM05D000003 ORTHO05D009135 3.7e-06 55.8 93 34.4
CANSAT11G2283 Cannabis sativa HOM05D000003 ORTHO05D000004 4.9e-06 55.5 156 23.7
CANSAT80G2601 Cannabis sativa HOM05D000003 ORTHO05D000004 4.9e-06 55.5 245 24.1
Nn8g41081 Nelumbo nucifera HOM05D000003 ORTHO05D000004 4.9e-06 55.5 78 34.6
Atru.chr10.59 Acer truncatum HOM05D000003 ORTHO05D002259 6.4e-06 55.1 91 30.8
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 6.4e-06 55.1 170 25.9
CANSAT11G0945 Cannabis sativa HOM05D000003 ORTHO05D000167 6.4e-06 55.1 119 26.9
CANSAT64G0596 Cannabis sativa HOM05D000003 ORTHO05D000167 6.4e-06 55.1 118 26.3
Sed0004028 Sechium edule HOM05D000003 ORTHO05D000004 6.4e-06 55.1 139 25.9
CANSAT01G0197 Cannabis sativa HOM05D000003 ORTHO05D000167 8.3e-06 54.7 81 33.3
CANSAT11G0789 Cannabis sativa HOM05D000003 ORTHO05D000004 8.3e-06 54.7 105 27.6
CANSAT21G1819 Cannabis sativa HOM05D000003 ORTHO05D000004 8.3e-06 54.7 82 34.1
CANSAT35G0312 Cannabis sativa HOM05D000003 ORTHO05D000167 8.3e-06 54.7 91 28.6
CANSAT78G0093 Cannabis sativa HOM05D000003 ORTHO05D000167 8.3e-06 54.7 93 29.0
CiPaw.14G093100 Carya illinoinensis HOM05D000003 ORTHO05D000004 8.3e-06 54.7 147 27.2
ClCG10G011200 Citrullus lanatus HOM05D000003 ORTHO05D013581 8.3e-06 54.7 112 27.7
Nn5g27257 Nelumbo nucifera HOM05D000003 ORTHO05D000004 8.3e-06 54.7 150 28.7


User provided reference genes

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