Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.2e-178 629.8 324 100.0
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 9.3e-160 567.0 307 93.8
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 3.7e-156 555.1 307 90.9
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 6.2e-156 554.3 305 92.5
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.1e-155 553.5 306 91.2
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 6.9e-155 550.8 307 91.2
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 6.9e-155 550.8 307 91.5
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 9.0e-155 550.4 307 90.9
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.2e-154 550.1 307 90.2
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.2e-154 550.1 307 91.2
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.5e-154 549.7 306 90.8
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.6e-154 548.9 307 91.5
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 2.6e-154 548.9 307 91.5
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 2.6e-154 548.9 307 90.6
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 3.4e-154 548.5 307 90.9
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.5e-154 548.1 307 90.9
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 1.3e-153 546.6 307 90.9
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 1.7e-153 546.2 307 90.2
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 1.7e-153 546.2 304 90.8
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.2e-153 545.8 305 89.8
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 2.9e-153 545.4 306 89.9
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 2.9e-153 545.4 307 89.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 4.9e-153 544.7 307 89.3
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 8.4e-153 543.9 307 90.2
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 8.4e-153 543.9 307 89.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.1e-152 543.5 307 89.6
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.1e-152 543.5 307 89.3
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 1.4e-152 543.1 307 89.9
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.4e-152 543.1 307 89.6
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.4e-152 543.1 307 89.6
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.5e-152 542.3 307 89.6
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 2.5e-152 542.3 307 89.9
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 5.5e-152 541.2 307 89.9
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 5.5e-152 541.2 307 89.3
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 7.1e-152 540.8 307 89.6
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 7.1e-152 540.8 305 89.2
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 7.1e-152 540.8 306 89.5
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 7.1e-152 540.8 307 89.6
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 9.3e-152 540.4 307 89.6
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.2e-151 540.0 307 88.6
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.2e-151 540.0 307 89.3
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 2.1e-151 539.3 305 89.5
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 2.1e-151 539.3 305 89.2
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 2.1e-151 539.3 305 89.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 2.7e-151 538.9 307 88.6
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 2.7e-151 538.9 305 88.9
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 3.5e-151 538.5 307 88.6
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 3.5e-151 538.5 305 88.9
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 3.5e-151 538.5 307 89.3
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 6.0e-151 537.7 314 87.3
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.3e-150 536.6 305 88.5
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.3e-150 536.6 307 88.3
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.3e-150 536.6 304 89.5
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 1.3e-150 536.6 305 88.5
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.8e-150 536.2 307 88.3
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.3e-150 535.8 305 87.5
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.3e-150 535.8 305 87.5
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 2.3e-150 535.8 305 88.5
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 3.0e-150 535.4 307 88.3
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 3.9e-150 535.0 307 87.9
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 6.7e-150 534.3 305 88.5
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 8.7e-150 533.9 307 89.3
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 8.7e-150 533.9 305 87.9
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.1e-149 533.5 307 88.6
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.5e-149 533.1 305 88.5
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.5e-149 532.3 306 88.2
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 7.4e-149 530.8 305 88.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 7.4e-149 530.8 307 87.9
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 9.6e-149 530.4 307 87.3
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 1.6e-148 529.6 304 88.2
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.8e-148 528.9 317 84.2
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 2.8e-148 528.9 317 84.2
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.8e-148 528.9 304 88.2
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 6.2e-148 527.7 305 87.9
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 8.2e-148 527.3 304 87.8
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 3.1e-147 525.4 305 86.6
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 4.0e-147 525.0 304 87.5
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 9.0e-147 523.9 305 85.6
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 1.5e-146 523.1 303 87.8
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 1.5e-146 523.1 305 86.9
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.5e-146 523.1 305 86.6
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 2.6e-146 522.3 301 87.0
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 3.4e-146 521.9 303 87.5
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 3.4e-146 521.9 303 87.5
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 3.4e-146 521.9 306 84.6
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 7.6e-146 520.8 303 87.5
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.0e-145 520.4 307 86.6
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 2.2e-145 519.2 304 86.5
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 2.9e-145 518.8 304 86.5
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.9e-145 518.8 305 84.9
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 8.4e-145 517.3 303 86.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 8.4e-145 517.3 303 86.8
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.1e-144 516.9 303 86.8
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.9e-144 516.2 303 86.1
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 3.2e-144 515.4 302 85.8
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 3.2e-144 515.4 305 85.9
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 4.2e-144 515.0 302 84.8
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 9.3e-144 513.8 307 84.4
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.2e-143 513.5 303 86.5
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 2.7e-143 512.3 304 85.5
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.7e-143 512.3 302 84.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 7.9e-143 510.8 305 85.2
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 7.9e-143 510.8 305 85.2
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 1.0e-142 510.4 303 85.5
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.0e-142 510.4 307 83.4
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.3e-142 510.0 303 85.5
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.3e-142 509.2 307 84.7
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 1.1e-141 506.9 307 83.1
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.1e-141 506.9 344 78.8
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 1.9e-141 506.1 303 85.1
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.9e-141 506.1 307 83.1
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 4.3e-141 505.0 305 83.3
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 5.7e-141 504.6 303 85.1
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 9.7e-141 503.8 303 85.1
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 2.8e-140 502.3 307 82.4
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 8.2e-140 500.7 303 83.8
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 8.2e-140 500.7 303 83.8
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 1.2e-135 486.9 279 87.5
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 6.9e-131 471.1 303 81.2
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.8e-126 456.4 303 78.5
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 7.4e-125 451.1 245 92.2
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 4.1e-123 445.3 254 89.0
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 2.0e-122 443.0 305 71.5
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.9e-121 439.1 303 72.3
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.4e-120 436.8 307 76.9
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 5.5e-120 434.9 298 71.1
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 7.2e-120 434.5 301 74.8
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.3e-117 425.6 301 68.4
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 4.4e-117 425.2 298 69.5
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.8e-115 419.9 297 69.0
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 3.1e-115 419.1 299 71.9
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 7.0e-115 417.9 300 70.0
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.6e-114 416.0 297 69.4
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 3.5e-114 415.6 311 68.2
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.0e-113 414.1 301 69.1
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.5e-112 408.3 232 89.2
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.0e-110 402.5 301 67.1
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.0e-110 402.5 301 67.1
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 7.5e-109 397.9 301 65.8
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 2.2e-108 396.4 227 89.4
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 9.1e-107 391.0 298 63.8
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.2e-103 380.6 298 63.4
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.2e-100 369.8 299 61.5
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.9e-96 356.7 302 62.3
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 8.3e-92 341.3 298 60.7
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 4.6e-82 308.9 225 70.7
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.0e-73 281.2 297 54.2
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 1.4e-70 270.8 186 78.0
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 4.4e-61 239.2 139 88.5
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-59 234.6 288 44.1
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.5e-56 224.2 154 72.1
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.3e-38 162.5 158 52.5
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 4.9e-36 156.0 91 87.9
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.6e-34 151.0 130 60.0
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 1.8e-33 147.5 80 92.5
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 5.1e-33 146.0 103 71.8
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 4.8e-31 139.4 82 84.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.2e-27 126.3 80 70.0
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 7.7e-21 105.5 58 82.8
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 9.7e-16 88.6 94 51.1


User provided reference genes

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