Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1736.5 898 100.0
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1527.3 926 85.5
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1513.8 924 83.9
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1494.2 926 82.2
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1492.6 931 82.2
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1491.5 926 82.4
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1486.5 926 81.9
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1479.9 926 81.1
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1478.8 926 81.3
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1478.0 922 81.8
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1473.4 927 80.8
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1469.1 924 80.1
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1469.1 922 80.7
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1468.4 923 81.0
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1466.8 926 79.9
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1464.5 926 81.1
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1463.0 926 81.0
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1462.6 926 79.9
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1459.9 926 79.9
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1459.1 922 81.2
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1453.7 922 79.4
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1453.0 926 79.3
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1452.2 921 80.1
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 1452.2 922 79.4
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 1451.8 922 79.4
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1451.4 927 79.6
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1449.5 926 79.9
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1448.0 922 79.2
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1447.2 922 79.9
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1439.1 923 78.7
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1437.9 922 78.5
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1437.2 922 79.7
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1436.4 926 77.8
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1435.2 926 79.3
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1434.1 926 79.7
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1433.3 926 77.5
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1432.9 922 78.0
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1431.4 922 79.5
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1430.6 923 78.5
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1430.6 926 77.5
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1427.9 922 78.3
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1427.2 926 77.0
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1426.8 926 77.5
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1423.7 922 79.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1422.5 976 74.9
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1412.1 924 78.0
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1411.0 924 77.7
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1409.4 928 77.7
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1403.7 923 77.0
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1403.3 922 78.0
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1397.9 927 77.0
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1397.5 922 77.2
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1391.7 922 76.8
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1390.2 923 76.6
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1390.2 924 76.4
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1382.1 926 75.8
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1376.7 892 78.3
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1376.3 922 75.7
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1375.5 922 75.9
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1372.5 927 75.1
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1372.5 927 75.1
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1372.5 925 76.2
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1369.4 922 75.2
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1365.1 922 75.6
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1362.8 926 74.5
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1362.1 928 74.4
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1355.5 922 74.2
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1352.4 929 73.0
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1352.4 924 73.5
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1349.3 922 74.5
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1347.0 928 74.1
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1346.3 923 74.2
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1345.9 928 73.9
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1340.9 924 73.4
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1337.0 922 73.3
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1335.9 929 71.7
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1329.7 929 71.4
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1329.3 924 73.2
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1328.5 929 70.8
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1327.0 897 75.7
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1325.8 929 70.6
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1324.3 929 70.8
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1323.9 929 71.0
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1320.4 929 70.5
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1317.4 927 70.6
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1315.4 927 70.4
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1315.4 923 72.4
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1314.7 927 70.3
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1314.7 929 70.8
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1312.7 925 73.6
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1312.4 927 70.6
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1304.7 925 69.8
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1303.9 925 69.8
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1303.9 925 69.7
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1303.1 925 69.6
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1302.7 925 69.5
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1302.3 862 76.7
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1285.4 888 74.0
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1276.5 898 72.6
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1266.5 801 81.9
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1225.7 944 66.0
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1211.8 899 69.0
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1202.6 925 65.6
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1187.6 922 64.8
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1144.8 922 62.4
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 0.0e+00 1097.8 674 84.0
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 7.7e-289 997.3 735 69.3
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 1.8e-277 959.5 610 79.8
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.9e-275 951.4 925 53.0
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.3e-269 932.6 738 64.6
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 2.6e-268 929.1 923 50.3
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 1.4e-261 906.7 587 79.6
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 9.8e-252 874.0 924 47.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 4.9e-251 871.7 920 49.3
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 1.1e-189 667.9 936 42.4
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 2.0e-183 647.1 712 52.0
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 9.4e-170 601.7 394 76.4
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 2.3e-160 570.5 466 62.4
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 4.6e-148 529.6 366 71.6
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 3.3e-122 443.7 359 62.7
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 4.0e-96 357.1 318 62.9
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 2.2e-89 334.7 374 50.8
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.5e-77 294.7 177 83.1
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 3.1e-72 277.7 208 66.3
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 1.3e-70 272.3 1033 26.7
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 8.5e-62 243.0 296 48.6
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 7.5e-58 229.9 995 25.9
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 1.1e-37 162.9 100 73.0
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.3e-37 161.4 242 47.9
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 2.1e-36 158.7 178 49.4
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 4.1e-32 144.4 113 74.3
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.6e-31 142.5 648 22.7
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 2.4e-24 118.6 69 75.4
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 7.0e-24 117.1 68 75.0
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 5.2e-19 100.9 100 56.0
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 1.6e-12 79.3 86 54.7
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 2.4e-11 75.5 84 53.6


User provided reference genes

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