Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 2.1e-92 342.4 180 100.0
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 1.2e-52 210.3 155 78.7
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 5.9e-47 191.4 150 72.0
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 1.7e-46 189.9 153 70.6
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 3.2e-45 185.7 149 75.8
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 1.4e-43 180.3 149 70.5
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 1.5e-42 176.8 154 67.5
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 2.6e-42 176.0 149 71.8
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.3e-42 175.6 151 68.9
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 2.2e-41 172.9 150 71.3
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 2.8e-41 172.6 154 66.2
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 4.8e-41 171.8 151 68.2
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 3.1e-40 169.1 150 66.7
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 5.3e-40 168.3 150 65.3
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 5.3e-40 168.3 154 64.9
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 5.3e-40 168.3 149 66.4
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 7.0e-40 167.9 151 68.9
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 9.1e-40 167.5 155 67.1
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 1.2e-39 167.2 153 62.1
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 2.7e-39 166.0 149 65.8
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 5.9e-39 164.9 149 65.1
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 5.9e-39 164.9 158 63.9
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 1.0e-38 164.1 155 63.2
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 1.7e-38 163.3 162 62.3
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 1.7e-38 163.3 150 65.3
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 2.2e-38 162.9 149 63.8
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 2.9e-38 162.5 154 64.3
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 3.8e-38 162.2 152 61.2
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 3.8e-38 162.2 150 63.3
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 5.0e-38 161.8 150 64.7
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 6.5e-38 161.4 155 64.5
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 8.5e-38 161.0 151 64.2
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 1.5e-37 160.2 156 62.2
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 3.2e-37 159.1 151 63.6
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 4.2e-37 158.7 149 62.4
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 7.2e-37 157.9 150 60.0
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 9.4e-37 157.5 151 64.9
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 9.4e-37 157.5 157 61.1
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 9.4e-37 157.5 150 64.0
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 1.2e-36 157.1 151 62.3
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.6e-36 156.8 162 62.3
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 2.1e-36 156.4 154 61.0
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 2.7e-36 156.0 150 60.0
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 6.1e-36 154.8 156 62.2
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 8.0e-36 154.5 151 61.6
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 1.0e-35 154.1 140 66.4
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 1.0e-35 154.1 159 59.7
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 1.4e-35 153.7 152 62.5
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 1.8e-35 153.3 150 61.3
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 4.0e-35 152.1 154 62.3
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 5.2e-35 151.8 150 62.0
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 1.2e-34 150.6 151 60.9
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 1.5e-34 150.2 152 59.9
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 1.5e-34 150.2 151 62.3
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 9.8e-34 147.5 150 60.0
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 1.3e-33 147.1 149 60.4
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 8.3e-33 144.4 149 62.4
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 1.1e-32 144.1 150 58.7
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 2.4e-32 142.9 155 58.1
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 3.1e-32 142.5 150 57.3
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 7.0e-32 141.4 155 56.1
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 1.2e-31 140.6 152 58.6
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 2.0e-31 139.8 150 58.0
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 2.0e-31 139.8 150 58.0
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 2.7e-31 139.4 150 56.7
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 2.7e-31 139.4 150 56.0
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 2.7e-31 139.4 150 56.0
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 2.7e-31 139.4 156 59.0
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 5.9e-31 138.3 150 58.0
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 5.9e-31 138.3 150 58.0
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 7.7e-31 137.9 150 55.3
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 7.7e-31 137.9 150 55.3
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 7.7e-31 137.9 152 57.9
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 7.7e-31 137.9 148 56.8
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 1.0e-30 137.5 150 55.3
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 1.3e-30 137.1 150 58.7
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 2.9e-30 136.0 150 57.3
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 4.2e-29 132.1 151 53.6
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 7.2e-29 131.3 150 52.7
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 7.2e-29 131.3 145 57.2
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 1.6e-28 130.2 150 51.3
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 2.1e-28 129.8 148 54.1
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 2.8e-28 129.4 150 51.3
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 6.1e-28 128.3 160 53.1
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 1.8e-27 126.7 150 55.3
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 2.3e-27 126.3 150 53.3
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 4.0e-27 125.6 146 56.8
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 6.8e-27 124.8 150 55.3
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 3.7e-25 119.0 150 47.3
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 9.2e-24 114.4 150 46.7
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 3.5e-23 112.5 112 61.6
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.7e-22 110.2 139 52.5
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 6.6e-22 108.2 149 49.7
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 1.1e-21 107.5 136 54.4
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 1.5e-21 107.1 145 50.3
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 1.9e-21 106.7 130 52.3
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 2.5e-21 106.3 141 49.6
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 1.0e-19 100.9 155 47.1
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 1.0e-19 100.9 155 47.1
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 1.8e-19 100.1 145 49.0
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 8.9e-19 97.8 125 52.8
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 8.9e-19 97.8 146 47.9
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 2.2e-17 93.2 147 44.2
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 3.7e-17 92.4 131 47.3
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 1.8e-16 90.1 99 52.5
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 6.6e-14 81.6 79 58.2
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.9e-13 80.1 108 45.4
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 9.5e-13 77.8 77 58.4
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 4.7e-12 75.5 76 50.0
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 1.1e-11 74.3 105 44.8
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 5.2e-11 72.0 123 39.8
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 2.0e-10 70.1 102 42.2
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 9.8e-10 67.8 62 50.0
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 1.7e-09 67.0 46 73.9
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 7.0e-08 61.6 44 65.9
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 2.7e-07 59.7 102 35.3
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 3.0e-06 56.2 50 64.0


User provided reference genes

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