Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C821T7 Lonicera japonica HOM05D005422 ORTHO05D006578 0.0e+00 1201.8 600 100.0
CSS0043806 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 6.1e-266 920.6 619 74.5
CSS0029300 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 8.0e-266 920.2 619 74.5
Dinv14796 Davidia involucrata HOM05D005422 ORTHO05D006578 1.7e-260 902.5 632 73.1
Hma1.2p1_1340F.1_g276720 Hydrangea macrophylla HOM05D005422 ORTHO05D006578 3.3e-251 871.7 600 74.0
Peaxi162Scf00128g00843 Petunia axillaris HOM05D005422 ORTHO05D006578 2.9e-247 858.6 616 69.3
PGSC0003DMG400017439 Solanum tuberosum HOM05D005422 ORTHO05D006578 4.1e-246 854.7 619 69.5
Sopen05g009590 Solanum pennellii HOM05D005422 ORTHO05D006578 3.5e-245 851.7 619 69.0
Cc11_g16560 Coffea canephora HOM05D005422 ORTHO05D006578 1.1e-243 846.7 602 71.1
Solyc05g014540.3 Solanum lycopersicum HOM05D005422 ORTHO05D006578 1.1e-243 846.7 619 68.7
CAN.G163.4 Capsicum annuum HOM05D005422 ORTHO05D006578 1.9e-243 845.9 619 68.5
GSVIVG01010354001 Vitis vinifera HOM05D005422 ORTHO05D006578 1.8e-241 839.3 624 67.8
Actinidia33261 Actinidia chinensis HOM05D005422 ORTHO05D006578 6.8e-241 837.4 619 68.7
Oeu056686.1 Olea europaea HOM05D005422 ORTHO05D006578 1.2e-240 836.6 619 67.9
Nitab4.5_0000240g0030 Nicotiana tabacum HOM05D005422 ORTHO05D006578 4.4e-240 834.7 600 69.5
DCAR_024084 Daucus carota HOM05D005422 ORTHO05D006578 1.7e-231 806.2 584 69.2
QL03p054803 Quercus lobata HOM05D005422 ORTHO05D006578 6.4e-231 804.3 621 65.4
MSTRG.7977 Avicennia marina HOM05D005422 ORTHO05D006578 1.1e-230 803.5 619 64.6
Cpa.g.sc43.8 Carica papaya HOM05D005422 ORTHO05D006578 3.5e-229 798.5 622 65.8
FAN22G2139 Fragaria x ananassa HOM05D005422 ORTHO05D000550 7.8e-229 797.3 605 66.0
Cfa009312 Carpinus fangiana HOM05D005422 ORTHO05D006578 3.9e-228 795.0 626 65.3
CiPaw.06G099500 Carya illinoinensis HOM05D005422 ORTHO05D006578 1.6e-226 789.6 622 64.1
Rhsim12G0105700 Rhododendron simsii HOM05D005422 ORTHO05D006578 8.1e-226 787.3 655 64.6
Migut.K00694 Erythranthe guttata HOM05D005422 ORTHO05D006578 1.1e-225 786.9 619 64.8
FAN07G0746 Fragaria x ananassa HOM05D005422 ORTHO05D000550 3.4e-224 781.9 605 65.0
Manes.12G015200 Manihot esculenta HOM05D005422 ORTHO05D006578 3.8e-223 778.5 622 63.2
Lsat_1_v5_gn_3_29520 Lactuca sativa HOM05D005422 ORTHO05D006578 4.9e-223 778.1 602 64.5
RcHm_v2.0_Chr4g0431221 Rosa chinensis HOM05D005422 ORTHO05D006578 1.1e-222 776.9 624 63.3
TAR374G0226 Trochodendron aralioides HOM05D005422 ORTHO05D006578 4.2e-222 775.0 622 64.8
ECA246G0814 Erigeron canadensis HOM05D005422 ORTHO05D006578 7.1e-222 774.2 619 63.8
HanXRQChr06g0174981 Helianthus annuus HOM05D005422 ORTHO05D006578 7.1e-222 774.2 619 63.2
Nn3g16548 Nelumbo nucifera HOM05D005422 ORTHO05D006578 2.7e-221 772.3 628 63.4
Potri.010G055900 Populus trichocarpa HOM05D005422 ORTHO05D006578 1.7e-220 769.6 622 62.4
Ciclev10030973m.g Citrus clementina HOM05D005422 ORTHO05D006578 5.6e-219 764.6 622 62.4
Atru.chr11.2241 Acer truncatum HOM05D005422 ORTHO05D006578 3.6e-218 761.9 628 61.8
Aqoxy5G03525 Aquilegia oxysepala HOM05D005422 ORTHO05D006578 1.1e-217 760.4 626 62.6
MD13G1111800 Malus domestica HOM05D005422 ORTHO05D006578 1.8e-217 759.6 622 61.7
Atru.chr11.2256 Acer truncatum HOM05D005422 ORTHO05D006578 4.0e-217 758.4 628 61.5
Eucgr.B03458 Eucalyptus grandis HOM05D005422 ORTHO05D006578 1.5e-216 756.5 624 62.7
FvH4_4g24380 Fragaria vesca HOM05D005422 ORTHO05D006578 2.6e-216 755.7 602 63.8
FAN17G0355 Fragaria x ananassa HOM05D005422 ORTHO05D006578 8.4e-215 750.7 604 62.9
Prupe.1G233700 Prunus persica HOM05D005422 ORTHO05D006578 1.9e-214 749.6 624 62.0
Haze_12366 Corylus avellana HOM05D005422 ORTHO05D006578 4.2e-214 748.4 626 62.1
vmacro16136 Vaccinium macrocarpon HOM05D005422 ORTHO05D006578 9.3e-214 747.3 515 72.8
Sc11g0000670 Simmondsia chinensis HOM05D005422 ORTHO05D006578 1.2e-213 746.9 622 61.9
PGR102G2427 Punica granatum HOM05D005422 ORTHO05D006578 2.1e-213 746.1 623 61.0
Sabra10G0049200 Salix brachista HOM05D005422 ORTHO05D006578 3.5e-213 745.3 622 61.3
FAN12G3101 Fragaria x ananassa HOM05D005422 ORTHO05D006578 1.3e-212 743.4 693 56.7
DCAR_013710 Daucus carota HOM05D005422 ORTHO05D006578 6.7e-212 741.1 600 63.5
Thecc.02G273900 Theobroma cacao HOM05D005422 ORTHO05D006578 1.9e-211 739.6 623 61.2
PSO782G4908 Papaver somniferum HOM05D005422 ORTHO05D006578 1.4e-209 733.4 625 59.5
Hund25438 Selenicereus undatus HOM05D005422 ORTHO05D006578 5.3e-209 731.5 655 58.8
arahy.Tifrunner.gnm1.ann1.FGLE2H Arachis hypogaea HOM05D005422 ORTHO05D006578 2.0e-208 729.6 623 59.4
PSO063G3748 Papaver somniferum HOM05D005422 ORTHO05D006578 2.9e-207 725.7 625 59.0
arahy.Tifrunner.gnm1.ann1.3L5TD6 Arachis hypogaea HOM05D005422 ORTHO05D006578 6.4e-207 724.5 623 58.6
SGA_v2.0_scaffold46G17410 Striga asiatica HOM05D005422 ORTHO05D006578 9.3e-206 720.7 619 59.6
EL10Ac6g13434 Beta vulgaris HOM05D005422 ORTHO05D006578 1.1e-203 713.8 630 60.2
AUR62024162 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.5e-203 713.4 604 61.3
Lalb_Chr04g0262801 Lupinus albus HOM05D005422 ORTHO05D006578 1.5e-203 713.4 625 58.7
Sed0011369 Sechium edule HOM05D005422 ORTHO05D006578 2.5e-203 712.6 626 58.9
Ca_16485_v3 Cicer arietinum L. HOM05D005422 ORTHO05D006578 4.3e-203 711.8 625 58.9
AUR62005568 Chenopodium quinoa HOM05D005422 ORTHO05D006578 1.6e-202 709.9 640 58.1
CsaV3_1G006150 Cucumis sativus L. HOM05D005422 ORTHO05D006578 6.2e-202 708.0 624 58.5
MELO3C002044.2 Cucumis melo HOM05D005422 ORTHO05D006578 1.1e-201 707.2 624 58.7
Nitab4.5_0000581g0110 Nicotiana tabacum HOM05D005422 ORTHO05D006578 6.9e-201 704.5 594 61.4
Medtr3g085750 Medicago truncatula HOM05D005422 ORTHO05D006578 9.0e-201 704.1 627 58.9
Gorai.009G333700 Gossypium raimondii HOM05D005422 ORTHO05D006578 1.2e-200 703.7 624 57.9
Lj6g0021706 Lotus japonicus HOM05D005422 ORTHO05D006578 5.8e-200 701.4 627 58.2
THA.LOC104807895 Tarenaya hassleriana HOM05D005422 ORTHO05D006578 1.0e-199 700.7 611 58.3
Gohir.D05G312350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.9e-199 699.1 624 57.5
Psat5g094440 Pisum sativum HOM05D005422 ORTHO05D006578 5.5e-198 694.9 625 57.8
TPR.G22445 Trifolium pratense HOM05D005422 ORTHO05D006578 9.3e-198 694.1 625 57.9
Thhalv10018287m.g Eutrema salsugineum HOM05D005422 ORTHO05D006578 2.7e-197 692.6 623 56.5
MD16G1111400 Malus domestica HOM05D005422 ORTHO05D006578 1.3e-196 690.3 570 60.9
CANSAT01G0865 Cannabis sativa HOM05D005422 ORTHO05D006578 3.0e-196 689.1 511 66.5
AL2G26300 Arabidopsis lyrata HOM05D005422 ORTHO05D006578 3.9e-196 688.7 622 57.1
CARHR060210 Cardamine hirsuta HOM05D005422 ORTHO05D006578 8.7e-196 687.6 625 57.1
Sp5g22630 Schrenkiella parvula HOM05D005422 ORTHO05D006578 4.3e-195 685.3 622 56.1
Duzib268G1013 Durio zibethinus HOM05D005422 ORTHO05D006578 7.4e-195 684.5 621 56.8
Phvul.001G259300 Phaseolus vulgaris HOM05D005422 ORTHO05D006578 7.4e-195 684.5 629 56.3
Carub.0002s1397 Capsella rubella HOM05D005422 ORTHO05D006578 4.8e-194 681.8 622 56.1
AT1G67630 Arabidopsis thaliana HOM05D005422 ORTHO05D006578 6.3e-194 681.4 622 56.4
BcaB05g24303 Brassica carinata HOM05D005422 ORTHO05D006578 3.1e-193 679.1 624 55.4
MBI18_g30536_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 7.7e-192 674.5 661 55.5
Lj6g0001538 Lotus japonicus HOM05D005422 ORTHO05D006578 1.7e-191 673.3 628 57.0
COL.COLO4_23617 Corchorus olitorius HOM05D005422 ORTHO05D006578 3.8e-191 672.2 627 56.9
VMungo1383G2526 Vigna mungo HOM05D005422 ORTHO05D006578 8.5e-191 671.0 628 56.5
BcaC03g14856 Brassica carinata HOM05D005422 ORTHO05D006578 1.2e-189 667.2 621 54.6
BolC2t08466H Brassica oleracea HOM05D005422 ORTHO05D006578 1.6e-189 666.8 621 54.8
A02p14390 Brassica napus HOM05D005422 ORTHO05D006578 2.1e-189 666.4 621 54.9
C02p23270 Brassica napus HOM05D005422 ORTHO05D006578 2.1e-189 666.4 621 54.6
Glyma.18G009300 Glycine max HOM05D005422 ORTHO05D006578 7.9e-189 664.5 626 55.9
BraA02t06501Z Brassica rapa HOM05D005422 ORTHO05D006578 1.0e-188 664.1 621 54.6
ClCG04G011650 Citrullus lanatus HOM05D005422 ORTHO05D006578 6.7e-188 661.4 618 56.5
Aa31LG4G12020 Aethionema arabicum HOM05D005422 ORTHO05D006578 9.1e-185 651.0 686 51.2
ATR0743G050 Amborella trichopoda HOM05D005422 ORTHO05D006578 9.7e-179 630.9 633 52.9
Duzib251G0558 Durio zibethinus HOM05D005422 ORTHO05D006578 1.7e-175 620.2 623 53.3
unitig_749.g13303 Utricularia gibba HOM05D005422 ORTHO05D006578 1.2e-173 614.0 613 52.7
Gohir.A05G311350 Gossypium hirsutum HOM05D005422 ORTHO05D006578 2.9e-159 566.2 624 48.9
Glyma.11G247900 Glycine max HOM05D005422 ORTHO05D006578 2.5e-150 536.6 487 57.5
Zm00001eb409930 Zea mays HOM05D005422 ORTHO05D006578 5.5e-150 535.4 629 48.0
SEGI_16764 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.6e-149 533.9 639 46.8
SEGI_31313 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.6e-149 533.9 639 46.8
SEGI_15215 Sequoiadendron giganteum HOM05D005422 ORTHO05D006578 1.0e-148 531.2 635 46.9
SHI17936 Sapria himalayana HOM05D005422 ORTHO05D006578 2.0e-144 516.9 620 47.4
HPP92_024300 Vanilla planifolia HOM05D005422 ORTHO05D006578 2.3e-140 503.4 627 46.7
CDE09G1061 Ceratophyllum demersum HOM05D005422 ORTHO05D006578 2.0e-131 473.8 516 50.4
CSS0043308 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 3.5e-128 463.0 403 62.3
HPP92_024298 Vanilla planifolia HOM05D005422 ORTHO05D006578 8.6e-127 458.4 387 61.0
Mapoly0035s0099 Marchantia polymorpha HOM05D005422 ORTHO05D006578 2.1e-125 453.8 651 40.4
Pp3c10_15960 Physcomitrium patens HOM05D005422 ORTHO05D006578 7.5e-123 445.3 635 40.8
CSS0016009 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 1.0e-119 434.9 408 58.8
Os12g0242900 Oryza sativa ssp. japonica HOM05D005422 ORTHO05D006578 4.3e-118 429.5 407 55.8
SMO164G0100 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.1e-110 404.8 582 40.0
AagrBONN_evm.TU.Sc2ySwM_228.1647 Anthoceros agrestis HOM05D005422 ORTHO05D006578 5.1e-103 379.4 468 44.9
CBR_g26038 Chara braunii HOM05D005422 ORTHO05D006578 5.5e-65 253.1 754 27.3
MCO02G188 Micromonas commoda HOM05D005422 ORTHO05D006578 1.7e-61 241.5 670 28.2
unitig_35.g30205 Utricularia gibba HOM05D005422 ORTHO05D006578 2.8e-61 240.7 260 50.4
PRCOL_00001924 Prasinoderma coloniale HOM05D005422 ORTHO05D006578 1.4e-60 238.4 632 28.8
arahy.Tifrunner.gnm1.ann1.T7I6MJ Arachis hypogaea HOM05D005422 ORTHO05D006578 2.0e-54 218.0 215 50.2
CSS0044941 Camellia sinensis var. sinensis HOM05D005422 ORTHO05D006578 5.7e-54 216.5 130 79.2
SMO076G0002 Selaginella moellendorffii HOM05D005422 ORTHO05D006578 1.2e-51 208.8 248 45.6
CARHR058070 Cardamine hirsuta HOM05D005422 ORTHO05D006578 1.6e-51 208.4 167 62.3
arahy.Tifrunner.gnm1.ann1.PQ2R0I Arachis hypogaea HOM05D005422 ORTHO05D006578 1.8e-44 184.9 143 62.2
Cre01.g017450 Chlamydomonas reinhardtii HOM05D005422 ORTHO05D006578 9.1e-44 182.6 388 32.2
Lsat_1_v5_gn_5_63620 Lactuca sativa HOM05D005422 ORTHO05D006040 6.1e-40 169.9 162 55.6
Lsat_1_v5_gn_8_120961 Lactuca sativa HOM05D005422 ORTHO05D006578 2.1e-32 144.8 163 48.5
Cfa024010 Carpinus fangiana HOM05D003649 ORTHO05D004498 1.8e-28 131.7 540 25.6
unitig_35.g30204 Utricularia gibba HOM05D005422 ORTHO05D006578 9.2e-28 129.4 140 47.9
Lsat_1_v5_gn_5_146881 Lactuca sativa HOM05D005422 ORTHO05D019256 6.6e-26 123.2 148 45.9
FvH4_4g24360 Fragaria vesca HOM05D005422 ORTHO05D006578 1.9e-25 121.7 89 69.7
HPP92_024297 Vanilla planifolia HOM05D005422 ORTHO05D006578 9.5e-25 119.4 150 42.7
arahy.Tifrunner.gnm1.ann1.IS07F8 Arachis hypogaea HOM05D005422 ORTHO05D006578 8.0e-24 116.3 95 60.0
Rhsim03G0100700 Rhododendron simsii HOM05D005422 ORTHO05D006578 1.9e-20 105.1 235 33.2
Lsat_1_v5_gn_7_52961 Lactuca sativa HOM05D001824 ORTHO05D006578 2.0e-19 101.7 69 63.8
Lsat_1_v5_gn_2_95100 Lactuca sativa HOM05D005290 ORTHO05D006040 3.5e-19 100.9 169 39.1
arahy.Tifrunner.gnm1.ann1.SR9TX3 Arachis hypogaea HOM05D005422 ORTHO05D001437 1.0e-18 99.4 81 61.7
Potri.008G178951 Populus trichocarpa HOM05D005422 ORTHO05D006578 3.9e-18 97.4 123 45.5
Lsat_1_v5_gn_3_78701 Lactuca sativa HOM05D005422 ORTHO05D006578 5.0e-18 97.1 71 62.0
Lsat_1_v5_gn_6_18500 Lactuca sativa HOM05D001824 ORTHO05D006578 9.5e-17 92.8 69 60.9
Sabra08G0136500 Salix brachista HOM05D005422 ORTHO05D006578 1.8e-15 88.6 77 53.2
arahy.Tifrunner.gnm1.ann1.L1WA2E Arachis hypogaea HOM05D001562 ORTHO05D001437 1.2e-11 75.9 65 56.9
Lsat_1_v5_gn_4_120120 Lactuca sativa HOM05D001824 ORTHO05D006578 1.7e-10 72.0 52 61.5
C02p23310 Brassica napus HOM05D005422 ORTHO05D006578 6.6e-10 70.1 101 38.6
SHI54583 Sapria himalayana HOM05D005422 ORTHO05D006578 1.1e-09 69.3 53 64.2
arahy.Tifrunner.gnm1.ann1.E05V9C Arachis hypogaea HOM05D000386 ORTHO05D083937 2.1e-08 65.1 75 48.0
MBI10_g35396_MAGBIO Magnolia biondii HOM05D005422 ORTHO05D006578 6.2e-08 63.5 43 69.8
VMungo1215G3139 Vigna mungo HOM05D003635 ORTHO05D004283 8.1e-08 63.2 54 50.0
BcaC03g14863 Brassica carinata HOM05D000026 ORTHO05D000094 2.3e-07 61.6 51 56.9
Potri.010G096301 Populus trichocarpa HOM05D005422 ORTHO05D006578 5.2e-07 60.5 46 56.5
Lsat_1_v5_gn_4_127141 Lactuca sativa HOM05D007351 ORTHO05D009386 1.2e-06 59.3 34 73.5
AL1G40980 Arabidopsis lyrata HOM05D002438 ORTHO05D002617 7.6e-06 56.6 41 56.1


User provided reference genes

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