Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C77T3 Lonicera japonica HOM05D006244 ORTHO05D007401 2.9e-35 151.4 76 100.0
Lju337A6G22 Lonicera japonica HOM05D006244 ORTHO05D007401 5.6e-31 137.1 69 98.6
vmacro00644 Vaccinium macrocarpon HOM05D006244 ORTHO05D007401 3.3e-23 111.3 67 77.6
QL10p050150 Quercus lobata HOM05D006244 ORTHO05D007401 2.8e-22 108.2 67 76.1
QL05p011148 Quercus lobata HOM05D006244 ORTHO05D007401 6.2e-22 107.1 67 74.6
PGSC0003DMG400022864 Solanum tuberosum HOM05D006244 ORTHO05D007401 6.2e-22 107.1 69 73.9
CiPaw.02G053900 Carya illinoinensis HOM05D006244 ORTHO05D007401 2.3e-21 105.1 67 74.6
Nn3g18564 Nelumbo nucifera HOM05D006244 ORTHO05D007401 2.3e-21 105.1 67 73.1
CANSAT78G1025 Cannabis sativa HOM05D006244 ORTHO05D007401 3.1e-21 104.8 69 69.6
CAN.G31.8 Capsicum annuum HOM05D006244 ORTHO05D007401 5.2e-21 104.0 69 71.0
Dinv22748 Davidia involucrata HOM05D006244 ORTHO05D007401 5.2e-21 104.0 60 83.3
FAN17G1708 Fragaria x ananassa HOM05D006244 ORTHO05D007401 6.8e-21 103.6 67 71.6
HanXRQChr11g0343701 Helianthus annuus HOM05D006244 ORTHO05D007401 6.8e-21 103.6 67 71.6
Solyc11g045210.2 Solanum lycopersicum HOM05D006244 ORTHO05D007401 6.8e-21 103.6 69 71.0
Actinidia11297 Actinidia chinensis HOM05D006244 ORTHO05D007401 8.9e-21 103.2 64 79.7
RcHm_v2.0_Chr4g0406631 Rosa chinensis HOM05D006244 ORTHO05D007401 8.9e-21 103.2 67 73.1
Sopen11g020640 Solanum pennellii HOM05D006244 ORTHO05D007401 8.9e-21 103.2 69 71.0
Cfa020094 Carpinus fangiana HOM05D006244 ORTHO05D007401 1.2e-20 102.8 67 73.1
Cc07_g21300 Coffea canephora HOM05D006244 ORTHO05D007401 1.2e-20 102.8 67 73.1
COL.COLO4_12977 Corchorus olitorius HOM05D006244 ORTHO05D007401 1.2e-20 102.8 67 68.7
FAN07G2433 Fragaria x ananassa HOM05D006244 ORTHO05D007401 1.2e-20 102.8 67 71.6
Lsat_1_v5_gn_1_77900 Lactuca sativa HOM05D006244 ORTHO05D007401 1.2e-20 102.8 67 68.7
PSO675G8539 Papaver somniferum HOM05D006244 ORTHO05D007401 1.2e-20 102.8 67 70.1
GSVIVG01010791001 Vitis vinifera HOM05D006244 ORTHO05D007401 1.5e-20 102.4 67 71.6
ECA248G0275 Erigeron canadensis HOM05D006244 ORTHO05D007401 2.0e-20 102.1 64 71.9
Hma1.2p1_0324F.1_g125510 Hydrangea macrophylla HOM05D006244 ORTHO05D007401 2.6e-20 101.7 64 73.4
ClCG10G015550 Citrullus lanatus HOM05D006244 ORTHO05D007401 5.8e-20 100.5 67 68.7
MELO3C009823.2 Cucumis melo HOM05D006244 ORTHO05D007401 5.8e-20 100.5 66 69.7
CsaV3_3G040880 Cucumis sativus L. HOM05D006244 ORTHO05D007401 5.8e-20 100.5 66 69.7
Gohir.D10G128300 Gossypium hirsutum HOM05D006244 ORTHO05D007401 5.8e-20 100.5 67 68.7
Gorai.011G141500 Gossypium raimondii HOM05D006244 ORTHO05D007401 5.8e-20 100.5 67 68.7
Manes.04G043800 Manihot esculenta HOM05D006244 ORTHO05D007401 5.8e-20 100.5 67 70.1
Duzib175G0007 Durio zibethinus HOM05D006244 ORTHO05D007401 7.5e-20 100.1 67 67.2
Hund03170 Selenicereus undatus HOM05D006244 ORTHO05D007401 7.5e-20 100.1 65 70.8
TAR636G2962 Trochodendron aralioides HOM05D006244 ORTHO05D007401 7.5e-20 100.1 69 66.7
Cpa.g.sc9.298 Carica papaya HOM05D006244 ORTHO05D007401 9.9e-20 99.8 65 70.8
MD04G1042500 Malus domestica HOM05D006244 ORTHO05D007401 9.9e-20 99.8 67 74.6
Nitab4.5_0008822g0040 Nicotiana tabacum HOM05D006244 ORTHO05D007401 1.3e-19 99.4 69 69.6
Aqoxy2G04144 Aquilegia oxysepala HOM05D006244 ORTHO05D007401 1.7e-19 99.0 67 68.7
PSO732G0675 Papaver somniferum HOM05D006244 ORTHO05D007401 1.7e-19 99.0 67 65.7
Prupe.1G196900 Prunus persica HOM05D006244 ORTHO05D007401 1.7e-19 99.0 67 73.1
Migut.G01000 Erythranthe guttata HOM05D006244 ORTHO05D007401 2.2e-19 98.6 68 70.6
Ciclev10021382m.g Citrus clementina HOM05D006244 ORTHO05D007401 2.9e-19 98.2 66 74.2
Peaxi162Scf00126g00623 Petunia axillaris HOM05D006244 ORTHO05D007401 3.7e-19 97.8 69 71.0
Thecc.04G177000 Theobroma cacao HOM05D006244 ORTHO05D007401 3.7e-19 97.8 67 67.2
FvH4_4g10850 Fragaria vesca HOM05D006244 ORTHO05D007401 4.9e-19 97.4 62 72.6
FAN12G2117 Fragaria x ananassa HOM05D006244 ORTHO05D007401 4.9e-19 97.4 62 72.6
Nitab4.5_0004117g0020 Nicotiana tabacum HOM05D006244 ORTHO05D007401 4.9e-19 97.4 69 68.1
Gohir.A10G138500 Gossypium hirsutum HOM05D006244 ORTHO05D007401 1.1e-18 96.3 67 65.7
Sed0026513 Sechium edule HOM05D006244 ORTHO05D007401 1.1e-18 96.3 67 65.7
Atru.chr4.1240 Acer truncatum HOM05D006244 ORTHO05D007401 1.4e-18 95.9 66 68.2
BcaC07g40478 Brassica carinata HOM05D006244 ORTHO05D007401 1.9e-18 95.5 75 62.7
BcaC07g40479 Brassica carinata HOM05D006244 ORTHO05D007401 1.9e-18 95.5 75 62.7
Duzib151G0743 Durio zibethinus HOM05D006244 ORTHO05D007401 1.9e-18 95.5 67 64.2
EL10Ac3g05981 Beta vulgaris HOM05D006244 ORTHO05D007401 2.4e-18 95.1 67 64.2
A09p51770 Brassica napus HOM05D006244 ORTHO05D007401 4.1e-18 94.4 66 65.2
Thhalv10006132m.g Eutrema salsugineum HOM05D006244 ORTHO05D007401 5.4e-18 94.0 65 66.2
A04p02170 Brassica napus HOM05D006244 ORTHO05D007401 9.2e-18 93.2 65 64.6
BraA04t15944Z Brassica rapa HOM05D006244 ORTHO05D007401 9.2e-18 93.2 65 64.6
BraA09t40612Z Brassica rapa HOM05D006244 ORTHO05D007401 9.2e-18 93.2 66 65.2
SalBow3G2237 Salvia bowleyana HOM05D006244 ORTHO05D007401 1.2e-17 92.8 67 65.7
C08p34500 Brassica napus HOM05D006244 ORTHO05D007401 1.6e-17 92.4 65 63.1
BolC8t51051H Brassica oleracea HOM05D006244 ORTHO05D007401 1.6e-17 92.4 65 63.1
CSS0032343 Camellia sinensis var. sinensis HOM05D006244 ORTHO05D007401 1.6e-17 92.4 67 65.7
DCAR_028445 Daucus carota HOM05D006244 ORTHO05D007401 1.6e-17 92.4 66 60.6
BcaB02g08221 Brassica carinata HOM05D006244 ORTHO05D007401 2.7e-17 91.7 65 63.1
CARHR169870 Cardamine hirsuta HOM05D006244 ORTHO05D007401 2.7e-17 91.7 65 63.1
Lalb_Chr22g0352091 Lupinus albus HOM05D006244 ORTHO05D007401 2.7e-17 91.7 67 64.2
ATR0743G009 Amborella trichopoda HOM05D006244 ORTHO05D007401 3.5e-17 91.3 72 58.3
Carub.0005s2622 Capsella rubella HOM05D006244 ORTHO05D007401 3.5e-17 91.3 65 63.1
unitig_0.g2404 Utricularia gibba HOM05D006244 ORTHO05D007401 3.5e-17 91.3 67 61.2
HPP92_001248 Vanilla planifolia HOM05D006244 ORTHO05D007401 3.5e-17 91.3 69 56.5
HPP92_001264 Vanilla planifolia HOM05D006244 ORTHO05D007401 3.5e-17 91.3 69 56.5
Sp5g03670 Schrenkiella parvula HOM05D006244 ORTHO05D007401 6.0e-17 90.5 65 64.6
Sc19g0002910 Simmondsia chinensis HOM05D006244 ORTHO05D007401 6.0e-17 90.5 65 66.2
BcaNung05942 Brassica carinata HOM05D006244 ORTHO05D007401 7.8e-17 90.1 60 68.3
Ah.07g202200 Amaranthus hybridus HOM05D006244 ORTHO05D007401 1.7e-16 89.0 74 55.4
THA.LOC104803749 Tarenaya hassleriana HOM05D006244 ORTHO05D007401 3.9e-16 87.8 65 63.1
AL5G41400 Arabidopsis lyrata HOM05D006244 ORTHO05D007401 5.1e-16 87.4 62 64.5
AT3G59490 Arabidopsis thaliana HOM05D006244 ORTHO05D007401 5.1e-16 87.4 62 64.5
AUR62023861 Chenopodium quinoa HOM05D006244 ORTHO05D007401 5.1e-16 87.4 67 58.2
Lj3g0008901 Lotus japonicus HOM05D006244 ORTHO05D007401 6.6e-16 87.0 67 61.2
Aa31LG10G13810 Aethionema arabicum HOM05D006244 ORTHO05D007401 8.6e-16 86.7 61 65.6
PGR142G0422 Punica granatum HOM05D006244 ORTHO05D007401 8.6e-16 86.7 67 58.2
MSTRG.9759 Avicennia marina HOM05D006244 ORTHO05D007401 3.3e-15 84.7 66 60.6
Eucgr.H00368 Eucalyptus grandis HOM05D006244 ORTHO05D007401 5.6e-15 84.0 58 63.8
Zm00001eb239190 Zea mays HOM05D001072 ORTHO05D007401 7.3e-15 83.6 69 56.5
Sabra17G0017500 Salix brachista HOM05D006244 ORTHO05D007401 9.5e-15 83.2 66 59.1
C04p33420 Brassica napus HOM05D006244 ORTHO05D007401 1.6e-14 82.4 66 62.1
BolC4t24903H Brassica oleracea HOM05D006244 ORTHO05D007401 1.6e-14 82.4 66 62.1
Os09g0515300 Oryza sativa ssp. japonica HOM05D006244 ORTHO05D007401 1.6e-14 82.4 63 58.7
Potri.017G028900 Populus trichocarpa HOM05D006244 ORTHO05D007401 2.1e-14 82.0 66 57.6
Rhsim09G0025200 Rhododendron simsii HOM05D006244 ORTHO05D007401 2.8e-14 81.6 124 41.1
Zm00001eb318410 Zea mays HOM05D006244 ORTHO05D007401 2.8e-14 81.6 60 61.7
Psat5g289400 Pisum sativum HOM05D006244 ORTHO05D007401 1.4e-13 79.3 67 55.2
Phvul.005G153400 Phaseolus vulgaris HOM05D006244 ORTHO05D007401 1.8e-13 79.0 66 56.1
TPR.G18836 Trifolium pratense HOM05D006244 ORTHO05D007401 2.4e-13 78.6 67 55.2
Glyma.15G029700 Glycine max HOM05D006244 ORTHO05D007401 3.1e-13 78.2 65 55.4
arahy.Tifrunner.gnm1.ann1.IE55HN Arachis hypogaea HOM05D006244 ORTHO05D007401 1.2e-12 76.3 65 53.8
Psat5g289440 Pisum sativum HOM05D006244 ORTHO05D007401 1.2e-12 76.3 67 53.7
arahy.Tifrunner.gnm1.ann1.LPC3IP Arachis hypogaea HOM05D006244 ORTHO05D007401 2.0e-12 75.5 65 53.8
TWI38G0370 Tripterygium wilfordii HOM05D006244 ORTHO05D007401 2.6e-12 75.1 67 58.2
Medtr2g098960 Medicago truncatula HOM05D006244 ORTHO05D007401 5.8e-12 73.9 66 50.0
Actinidia27645 Actinidia chinensis HOM05D006244 ORTHO05D007401 8.4e-11 70.1 40 80.0
AUR62002326 Chenopodium quinoa HOM05D006244 ORTHO05D007401 1.4e-10 69.3 67 50.7
MBI08_g33169_MAGBIO Magnolia biondii HOM05D006244 ORTHO05D007401 4.6e-09 64.3 37 75.7


User provided reference genes

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