Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C759T7 Lonicera japonica HOM05D000089 ORTHO05D235846 5.2e-87 324.3 160 100.0
vmacro01379 Vaccinium macrocarpon HOM05D000089 ORTHO05D000104 2.0e-22 109.8 244 34.4
Prupe.1G310300 Prunus persica HOM05D000089 ORTHO05D000104 7.6e-22 107.8 249 36.1
Cc11_g10200 Coffea canephora HOM05D000089 ORTHO05D000104 8.4e-21 104.4 250 34.4
Dinv31641 Davidia involucrata HOM05D000089 ORTHO05D000104 1.1e-20 104.0 250 35.2
TAR374G1057 Trochodendron aralioides HOM05D000089 ORTHO05D000104 1.9e-20 103.2 241 34.9
Actinidia13661 Actinidia chinensis HOM05D000089 ORTHO05D000104 5.5e-20 101.7 248 33.5
CSS0031579 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000104 5.5e-20 101.7 251 34.3
FAN07G0557 Fragaria x ananassa HOM05D000089 ORTHO05D000104 5.5e-20 101.7 247 34.4
Atru.chr11.1248 Acer truncatum HOM05D000089 ORTHO05D000104 7.1e-20 101.3 250 34.0
Rhsim12G0083400 Rhododendron simsii HOM05D000089 ORTHO05D000104 9.3e-20 100.9 254 33.9
Lalb_Chr10g0100041 Lupinus albus HOM05D000089 ORTHO05D000104 1.6e-19 100.1 249 34.9
MD13G1042500 Malus domestica HOM05D000089 ORTHO05D000104 1.6e-19 100.1 249 34.5
CSS0045920 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000104 2.1e-19 99.8 250 34.0
Nn4g23822 Nelumbo nucifera HOM05D000089 ORTHO05D000104 2.1e-19 99.8 250 33.6
DCAR_007243 Daucus carota HOM05D000089 ORTHO05D000104 2.7e-19 99.4 240 34.6
Cfa018600 Carpinus fangiana HOM05D000089 ORTHO05D000104 6.0e-19 98.2 246 33.7
SGA_v2.0_scaffold124G33529 Striga asiatica HOM05D000089 ORTHO05D000104 7.9e-19 97.8 248 32.7
Lj6C759T6 Lonicera japonica HOM05D000089 ORTHO05D000104 1.0e-18 97.4 229 34.5
Cpa.g.sc1.177 Carica papaya HOM05D000089 ORTHO05D000104 2.3e-18 96.3 250 33.2
Ciclev10032139m.g Citrus clementina HOM05D000089 ORTHO05D000104 5.1e-18 95.1 250 31.6
TWI31G0795 Tripterygium wilfordii HOM05D000089 ORTHO05D000104 5.1e-18 95.1 248 33.5
Oeu014304.1 Olea europaea HOM05D000089 ORTHO05D000104 6.7e-18 94.7 262 31.7
Migut.L01067 Erythranthe guttata HOM05D000089 ORTHO05D000104 1.1e-17 94.0 251 31.1
RcHm_v2.0_Chr4g0435251 Rosa chinensis HOM05D000089 ORTHO05D000104 1.1e-17 94.0 249 33.3
CiPaw.15G084400 Carya illinoinensis HOM05D000089 ORTHO05D000104 1.5e-17 93.6 251 31.5
QL01p043121 Quercus lobata HOM05D000089 ORTHO05D000104 1.5e-17 93.6 260 32.7
AUR62002878 Chenopodium quinoa HOM05D000089 ORTHO05D000104 1.9e-17 93.2 241 34.4
arahy.Tifrunner.gnm1.ann1.B9NP0R Arachis hypogaea HOM05D000089 ORTHO05D000104 2.5e-17 92.8 249 33.3
CAN.G100.31 Capsicum annuum HOM05D000089 ORTHO05D000104 2.5e-17 92.8 243 31.3
Lj2g0011701 Lotus japonicus HOM05D000089 ORTHO05D000104 2.5e-17 92.8 247 34.0
Carub.0002s1505 Capsella rubella HOM05D000089 ORTHO05D000104 3.3e-17 92.4 251 32.3
Potri.010G125400 Populus trichocarpa HOM05D000089 ORTHO05D000104 3.3e-17 92.4 247 33.2
AT1G68540 Arabidopsis thaliana HOM05D000089 ORTHO05D000104 4.3e-17 92.0 251 32.3
Thhalv10018881m.g Eutrema salsugineum HOM05D000089 ORTHO05D000104 4.3e-17 92.0 251 32.3
Nitab4.5_0002994g0110 Nicotiana tabacum HOM05D000089 ORTHO05D000104 4.3e-17 92.0 240 32.1
GSVIVG01011901001 Vitis vinifera HOM05D000089 ORTHO05D000104 4.3e-17 92.0 250 32.4
Manes.06G068800 Manihot esculenta HOM05D000089 ORTHO05D000104 5.6e-17 91.7 250 32.8
vmacro10555 Vaccinium macrocarpon HOM05D000089 ORTHO05D000104 5.6e-17 91.7 269 32.0
AL2G27440 Arabidopsis lyrata HOM05D000089 ORTHO05D000104 7.4e-17 91.3 251 32.3
arahy.Tifrunner.gnm1.ann1.S9KU5T Arachis hypogaea HOM05D000089 ORTHO05D000104 7.4e-17 91.3 249 32.9
FAN12G1025 Fragaria x ananassa HOM05D000089 ORTHO05D000104 7.4e-17 91.3 272 31.2
FAN12G0762 Fragaria x ananassa HOM05D000089 ORTHO05D000104 9.6e-17 90.9 272 31.2
Glyma.01G080700 Glycine max HOM05D000089 ORTHO05D000104 9.6e-17 90.9 247 33.2
Thecc.02G233200 Theobroma cacao HOM05D000089 ORTHO05D000104 9.6e-17 90.9 252 32.9
A10p24740 Brassica napus HOM05D000089 ORTHO05D000104 1.6e-16 90.1 251 32.3
COL.COLO4_10983 Corchorus olitorius HOM05D000089 ORTHO05D000104 1.6e-16 90.1 252 33.3
PSO017G6187 Papaver somniferum HOM05D000089 ORTHO05D000104 1.6e-16 90.1 250 32.4
PSO478G3036 Papaver somniferum HOM05D000089 ORTHO05D000104 1.6e-16 90.1 250 32.4
BcaC08g46266 Brassica carinata HOM05D000089 ORTHO05D000104 2.1e-16 89.7 251 32.3
C06p41380 Brassica napus HOM05D000089 ORTHO05D000104 2.1e-16 89.7 251 32.3
BolC6t39285H Brassica oleracea HOM05D000089 ORTHO05D000104 2.1e-16 89.7 251 32.3
Sopen01g030010 Solanum pennellii HOM05D000089 ORTHO05D000104 2.1e-16 89.7 250 30.0
Aqoxy3G00310 Aquilegia oxysepala HOM05D000089 ORTHO05D000104 2.8e-16 89.4 251 31.9
PGSC0003DMG400005197 Solanum tuberosum HOM05D000089 ORTHO05D000104 2.8e-16 89.4 250 30.0
BraA10t44537Z Brassica rapa HOM05D000089 ORTHO05D000104 3.7e-16 89.0 251 31.9
Hma1.2p1_0061F.1_g033980 Hydrangea macrophylla HOM05D000089 ORTHO05D000104 3.7e-16 89.0 271 30.3
Peaxi162Scf00919g00313 Petunia axillaris HOM05D000089 ORTHO05D000104 3.7e-16 89.0 258 29.1
SalBow8G0665 Salvia bowleyana HOM05D000089 ORTHO05D000104 3.7e-16 89.0 241 31.5
Solyc01g068080.4 Solanum lycopersicum HOM05D000089 ORTHO05D000104 3.7e-16 89.0 250 30.0
AUR62002871 Chenopodium quinoa HOM05D000089 ORTHO05D000104 6.2e-16 88.2 243 32.9
Ca_26762_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000104 6.2e-16 88.2 247 32.8
Sp5g23620 Schrenkiella parvula HOM05D000089 ORTHO05D000104 6.2e-16 88.2 251 31.9
EL10Ac6g14416 Beta vulgaris HOM05D000089 ORTHO05D000104 8.2e-16 87.8 245 31.0
Duzib268G1124 Durio zibethinus HOM05D000089 ORTHO05D000104 8.2e-16 87.8 252 32.9
Lsat_1_v5_gn_3_59300 Lactuca sativa HOM05D000089 ORTHO05D000104 1.1e-15 87.4 238 32.4
CARHR061320 Cardamine hirsuta HOM05D000089 ORTHO05D000104 1.4e-15 87.0 251 31.1
A07p34920 Brassica napus HOM05D000089 ORTHO05D000104 1.8e-15 86.7 251 31.9
Glyma.07G157200 Glycine max HOM05D000089 ORTHO05D000104 1.8e-15 86.7 247 31.6
Gorai.002G231600 Gossypium raimondii HOM05D000089 ORTHO05D000104 1.8e-15 86.7 249 32.1
vmacro20788 Vaccinium macrocarpon HOM05D000089 ORTHO05D000104 1.8e-15 86.7 221 33.0
Ah.03g137710 Amaranthus hybridus HOM05D000089 ORTHO05D000104 2.4e-15 86.3 251 31.5
CsaV3_5G034280 Cucumis sativus L. HOM05D000089 ORTHO05D000104 2.4e-15 86.3 248 30.2
Sed0013288 Sechium edule HOM05D000089 ORTHO05D000104 2.4e-15 86.3 248 30.6
TPR.G27957 Trifolium pratense HOM05D000089 ORTHO05D000104 3.1e-15 85.9 247 32.8
Potri.008G120200 Populus trichocarpa HOM05D000089 ORTHO05D000104 4.0e-15 85.5 250 31.2
Gohir.A01G198000 Gossypium hirsutum HOM05D000089 ORTHO05D000104 5.3e-15 85.1 252 31.7
Psat4g214400 Pisum sativum HOM05D000089 ORTHO05D000104 5.3e-15 85.1 247 32.8
CANSAT01G0100 Cannabis sativa HOM05D000089 ORTHO05D000104 6.9e-15 84.7 248 32.3
Phvul.003G031200 Phaseolus vulgaris HOM05D000089 ORTHO05D000104 9.0e-15 84.3 247 31.2
unitig_8.g3259 Utricularia gibba HOM05D000089 ORTHO05D000104 1.5e-14 83.6 207 33.3
VMungo1215G0325 Vigna mungo HOM05D000089 ORTHO05D000104 1.5e-14 83.6 247 30.4
Ah.03g137690 Amaranthus hybridus HOM05D000089 ORTHO05D000104 2.0e-14 83.2 247 31.6
BcaB03g15821 Brassica carinata HOM05D000089 ORTHO05D000104 2.0e-14 83.2 251 31.9
Gohir.A12G051501 Gossypium hirsutum HOM05D000089 ORTHO05D000104 2.0e-14 83.2 252 31.7
PGR119G1027 Punica granatum HOM05D000089 ORTHO05D000104 2.0e-14 83.2 250 29.2
Gorai.008G053000 Gossypium raimondii HOM05D000089 ORTHO05D000104 2.6e-14 82.8 252 31.7
Medtr5g056600 Medicago truncatula HOM05D000089 ORTHO05D000104 2.6e-14 82.8 247 32.4
THA.LOC104821937 Tarenaya hassleriana HOM05D000089 ORTHO05D000104 2.6e-14 82.8 250 31.6
Gohir.D12G049800 Gossypium hirsutum HOM05D000089 ORTHO05D000104 3.4e-14 82.4 252 31.7
SEGI_16594 Sequoiadendron giganteum HOM05D000089 ORTHO05D000104 5.8e-14 81.6 245 29.8
ClCG05G022750 Citrullus lanatus HOM05D000089 ORTHO05D000104 1.7e-13 80.1 272 29.4
Haze_17477 Corylus avellana HOM05D000089 ORTHO05D000104 1.7e-13 80.1 193 34.2
Nitab4.5_0000222g0300 Nicotiana tabacum HOM05D000089 ORTHO05D000104 2.2e-13 79.7 278 27.7
Aqoxy1G03144 Aquilegia oxysepala HOM05D000089 ORTHO05D000104 2.9e-13 79.3 250 30.4
Eucgr.G02325 Eucalyptus grandis HOM05D000089 ORTHO05D000104 3.8e-13 79.0 250 30.0
SEGI_13086 Sequoiadendron giganteum HOM05D000089 ORTHO05D000104 3.8e-13 79.0 248 28.6
Aqoxy1G03048 Aquilegia oxysepala HOM05D000089 ORTHO05D000104 6.5e-13 78.2 250 30.4
HanXRQChr17g0552051 Helianthus annuus HOM05D000089 ORTHO05D000104 6.5e-13 78.2 248 29.0
ECA246G1431 Erigeron canadensis HOM05D000089 ORTHO05D000104 1.4e-12 77.0 249 28.9
SEGI_27767 Sequoiadendron giganteum HOM05D000089 ORTHO05D000104 1.4e-12 77.0 252 28.6
MSTRG.7669 Avicennia marina HOM05D000089 ORTHO05D000104 2.5e-12 76.3 217 30.9
SEGI_22213 Sequoiadendron giganteum HOM05D000089 ORTHO05D000104 2.5e-12 76.3 248 27.4
MELO3C012243.2 Cucumis melo HOM05D000089 ORTHO05D000104 5.5e-12 75.1 242 28.9
MBI10_g16021_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 7.1e-12 74.7 250 27.6
SEGI_22014 Sequoiadendron giganteum HOM05D000089 ORTHO05D000104 4.6e-11 72.0 246 26.8
FAN23G2542 Fragaria x ananassa HOM05D000089 ORTHO05D000104 1.3e-10 70.5 230 30.0
AT1G25460 Arabidopsis thaliana HOM05D000089 ORTHO05D000104 1.8e-10 70.1 250 28.0
Sabra08G0091300 Salix brachista HOM05D000089 ORTHO05D000104 1.8e-10 70.1 248 29.8
SEGI_07045 Sequoiadendron giganteum HOM05D000089 ORTHO05D000104 1.8e-10 70.1 250 26.0
MBI10_g07281_MAGBIO Magnolia biondii HOM05D000089 ORTHO05D000104 2.3e-10 69.7 261 26.4
Actinidia14887 Actinidia chinensis HOM05D000089 ORTHO05D000104 3.0e-10 69.3 163 31.9
BraA09t39445Z Brassica rapa HOM05D000089 ORTHO05D000104 3.0e-10 69.3 251 27.9
BcaC05g26660 Brassica carinata HOM05D000089 ORTHO05D000104 5.1e-10 68.6 251 27.1
ATR0686G142 Amborella trichopoda HOM05D000089 ORTHO05D000104 6.7e-10 68.2 211 30.3
A09p39460 Brassica napus HOM05D000089 ORTHO05D000104 6.7e-10 68.2 251 26.7
FAN22G2378 Fragaria x ananassa HOM05D000089 ORTHO05D000104 6.7e-10 68.2 157 36.3
C05p24980 Brassica napus HOM05D000089 ORTHO05D000104 8.7e-10 67.8 251 27.5
BolC5t31230H Brassica oleracea HOM05D000089 ORTHO05D000104 8.7e-10 67.8 251 27.5
MD16G1043400 Malus domestica HOM05D000089 ORTHO05D000104 8.7e-10 67.8 108 39.8
Hund25067 Selenicereus undatus HOM05D000089 ORTHO05D000104 8.7e-10 67.8 246 26.0
CSS0017021 Camellia sinensis var. sinensis HOM05D000089 ORTHO05D000104 1.5e-09 67.0 185 31.9
Sabra10G0095400 Salix brachista HOM05D000089 ORTHO05D000104 1.5e-09 67.0 290 26.9
FvH4_4g27430 Fragaria vesca HOM05D000089 ORTHO05D000104 1.9e-09 66.6 157 35.0
BraA09t39444Z Brassica rapa HOM05D000089 ORTHO05D000104 2.5e-09 66.2 251 27.9
A09p39410 Brassica napus HOM05D000089 ORTHO05D000104 5.7e-09 65.1 251 27.9
Sc14g0007500 Simmondsia chinensis HOM05D000089 ORTHO05D000104 5.7e-09 65.1 67 53.7
Carub.0001s2503 Capsella rubella HOM05D000089 ORTHO05D000104 7.4e-09 64.7 250 25.6
Thhalv10008284m.g Eutrema salsugineum HOM05D000089 ORTHO05D000104 7.4e-09 64.7 237 27.4
Dinv31644 Davidia involucrata HOM05D000089 ORTHO05D000104 2.2e-08 63.2 67 53.7
AL1G39840 Arabidopsis lyrata HOM05D000089 ORTHO05D000104 2.8e-08 62.8 250 25.2
Sp1g22750 Schrenkiella parvula HOM05D000089 ORTHO05D000104 2.8e-08 62.8 249 27.3
Gohir.D01G188300 Gossypium hirsutum HOM05D000089 ORTHO05D000104 3.7e-08 62.4 64 54.7
TAR622G1160 Trochodendron aralioides HOM05D000089 ORTHO05D000104 6.3e-08 61.6 67 52.2
C05p24990 Brassica napus HOM05D000089 ORTHO05D000104 8.2e-08 61.2 248 28.2
Gorai.008G012500 Gossypium raimondii HOM05D000089 ORTHO05D000104 1.8e-07 60.1 227 26.9
AUR62035226 Chenopodium quinoa HOM05D000089 ORTHO05D000104 2.4e-07 59.7 65 50.8
Sed0027785 Sechium edule HOM05D000089 ORTHO05D000104 5.3e-07 58.5 111 36.0
Rhsim12G0084200 Rhododendron simsii HOM05D000089 ORTHO05D000007 1.5e-06 57.0 67 44.8
TAR622G1244 Trochodendron aralioides HOM05D000089 ORTHO05D000104 2.0e-06 56.6 66 47.0
Ca_23769_v3 Cicer arietinum L. HOM05D000089 ORTHO05D000104 3.4e-06 55.8 64 51.6
BcaC05g26451 Brassica carinata HOM05D000089 ORTHO05D000104 4.5e-06 55.5 214 27.1
SMO180G0031 Selaginella moellendorffii HOM05D000089 ORTHO05D000104 5.9e-06 55.1 253 25.3
Sc04g0006430 Simmondsia chinensis HOM05D000089 ORTHO05D000104 7.7e-06 54.7 67 47.8


User provided reference genes

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