Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 5.5e-52 207.2 95 100.0
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 8.2e-32 140.2 165 46.1
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 5.3e-31 137.5 164 45.7
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.0e-30 135.6 164 44.5
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 1.9e-28 129.0 179 39.7
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 1.9e-28 129.0 194 39.7
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 2.5e-28 128.6 194 39.2
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 7.2e-28 127.1 203 37.9
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 7.2e-28 127.1 200 38.5
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 9.4e-28 126.7 203 37.9
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.2e-27 126.3 196 37.8
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 1.2e-27 126.3 203 37.4
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.2e-27 126.3 203 38.4
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 1.6e-27 125.9 195 37.9
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 2.7e-27 125.2 203 36.9
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 2.7e-27 125.2 195 38.5
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.7e-27 125.2 185 40.0
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 3.6e-27 124.8 202 36.6
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 3.6e-27 124.8 201 38.3
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 4.7e-27 124.4 157 44.6
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 6.1e-27 124.0 203 37.4
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 8.0e-27 123.6 203 36.9
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 8.0e-27 123.6 203 36.9
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 8.0e-27 123.6 205 37.1
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 8.0e-27 123.6 203 37.4
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 8.0e-27 123.6 203 37.4
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 1.0e-26 123.2 203 36.5
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 1.8e-26 122.5 203 37.4
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.3e-26 122.1 209 36.4
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 2.3e-26 122.1 203 37.4
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 2.3e-26 122.1 203 36.5
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 3.0e-26 121.7 203 35.5
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 3.0e-26 121.7 203 35.5
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 3.0e-26 121.7 203 35.5
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 5.2e-26 120.9 203 36.9
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 6.7e-26 120.6 203 36.5
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 8.8e-26 120.2 203 36.9
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 8.8e-26 120.2 201 36.8
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 8.8e-26 120.2 203 36.9
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 8.8e-26 120.2 203 36.9
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 8.8e-26 120.2 197 36.0
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 8.8e-26 120.2 203 36.5
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 8.8e-26 120.2 203 36.5
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 1.2e-25 119.8 203 36.0
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 1.2e-25 119.8 203 35.5
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 1.2e-25 119.8 203 35.5
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 2.0e-25 119.0 189 37.6
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 2.0e-25 119.0 203 36.5
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.0e-25 119.0 200 36.5
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 2.6e-25 118.6 203 36.5
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 2.6e-25 118.6 202 36.1
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 4.4e-25 117.9 98 55.1
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 5.7e-25 117.5 203 36.0
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 5.7e-25 117.5 202 36.1
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 7.5e-25 117.1 203 35.5
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.7e-24 115.9 203 36.0
Nn7g37010 Nelumbo nucifera HOM05D003773 ORTHO05D004377 1.7e-24 115.9 98 53.1
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 2.8e-24 115.2 199 36.2
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 3.7e-24 114.8 203 35.0
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 4.8e-24 114.4 203 35.0
Sabra13G0011000 Salix brachista HOM05D006169 ORTHO05D007698 4.8e-24 114.4 98 52.0
ECA232G0889 Erigeron canadensis HOM05D003773 ORTHO05D004377 6.3e-24 114.0 98 50.0
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 6.3e-24 114.0 203 35.0
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 6.3e-24 114.0 222 32.9
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 6.3e-24 114.0 222 32.9
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 8.2e-24 113.6 98 50.0
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 8.2e-24 113.6 97 52.6
PGSC0003DMG400005677 Solanum tuberosum HOM05D003773 ORTHO05D004377 8.2e-24 113.6 97 53.6
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 1.4e-23 112.8 98 51.0
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 1.8e-23 112.5 95 52.6
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 1.8e-23 112.5 203 34.5
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 2.4e-23 112.1 203 35.0
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 3.1e-23 111.7 203 34.0
Oeu015711.3 Olea europaea HOM05D003773 ORTHO05D004377 3.1e-23 111.7 93 53.8
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 3.1e-23 111.7 204 34.3
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 3.1e-23 111.7 227 33.9
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 7.0e-23 110.5 204 35.8
unitig_8.g4953 Utricularia gibba HOM05D003773 ORTHO05D004377 3.5e-22 108.2 98 50.0
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 1.3e-21 106.3 203 33.5
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 1.7e-21 105.9 253 30.0
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 3.8e-21 104.8 50 88.0
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 3.8e-21 104.8 195 34.4
Lj6C717T13 Lonicera japonica HOM05D003773 ORTHO05D004377 6.5e-21 104.0 105 55.2
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 6.5e-21 104.0 207 33.8
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 8.5e-21 103.6 203 34.0
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 1.1e-20 103.2 50 88.0
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.9e-20 102.4 185 35.1
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 3.2e-20 101.7 203 33.0
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 4.2e-20 101.3 203 34.0
CiPaw.03G164900 Carya illinoinensis HOM05D003773 ORTHO05D004377 5.5e-20 100.9 93 51.6
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 7.2e-20 100.5 203 32.5
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 1.2e-19 99.8 206 33.5
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 1.6e-19 99.4 203 31.5
QL08p034434 Quercus lobata HOM05D003773 ORTHO05D004377 3.6e-19 98.2 71 66.2
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 8.0e-19 97.1 203 32.0
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 1.0e-18 96.7 203 34.0
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 1.8e-18 95.9 203 32.5
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 1.8e-18 95.9 203 32.0
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 8.8e-18 93.6 202 32.2
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 1.2e-17 93.2 183 35.0
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 2.0e-17 92.4 203 32.0
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 2.6e-17 92.0 203 31.5
MELO3C018786.2 Cucumis melo HOM05D003773 ORTHO05D004377 2.8e-16 88.6 49 75.5
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 2.8e-16 88.6 203 31.0
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 2.8e-16 88.6 203 30.0
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 3.7e-16 88.2 93 46.2
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 6.3e-16 87.4 203 29.6
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 6.3e-16 87.4 203 29.6
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 3.1e-15 85.1 203 30.0
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 3.1e-15 85.1 203 30.0
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.1e-15 85.1 203 30.0
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 4.1e-15 84.7 203 29.6
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 7.0e-15 84.0 203 29.6
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 9.1e-15 83.6 203 30.0
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 9.1e-15 83.6 202 30.7
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 9.1e-15 83.6 203 29.6
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 1.2e-14 83.2 203 29.6
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 1.2e-14 83.2 203 29.6
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 1.6e-14 82.8 203 29.1
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.5e-14 81.6 203 29.1
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.5e-14 81.6 203 29.6
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.5e-14 81.3 214 29.4
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.0e-13 80.1 39 84.6
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 1.7e-13 79.3 76 47.4
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 1.7e-13 79.3 204 29.4
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 2.3e-13 79.0 203 28.1
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 5.0e-13 77.8 203 28.6
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 5.0e-13 77.8 39 79.5
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 5.0e-13 77.8 204 28.4
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 2.5e-12 75.5 87 41.4
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 9.5e-12 73.6 42 78.6
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 1.2e-11 73.2 33 87.9
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 6.1e-11 70.9 42 78.6
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 6.1e-11 70.9 46 71.7
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 8.0e-11 70.5 77 44.2
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.4e-10 69.7 46 69.6
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 1.8e-10 69.3 42 73.8
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 3.0e-10 68.6 42 73.8
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 3.0e-10 68.6 42 73.8
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 3.0e-10 68.6 42 73.8
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.0e-10 68.2 42 71.4
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 4.0e-10 68.2 42 76.2
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 5.2e-10 67.8 41 73.2
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 5.2e-10 67.8 39 82.1
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 8.8e-10 67.0 42 73.8
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 1.2e-09 66.6 42 73.8
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 1.2e-09 66.6 42 73.8
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.5e-09 66.2 42 69.0
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.5e-09 66.2 42 69.0
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 1.5e-09 66.2 42 69.0
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 1.5e-09 66.2 42 71.4
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 2.6e-09 65.5 42 71.4
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 2.6e-09 65.5 42 71.4
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 3.4e-09 65.1 41 73.2
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 7.5e-09 63.9 42 69.0
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 9.8e-09 63.5 41 63.4
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 9.8e-09 63.5 42 66.7
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.3e-08 63.2 41 70.7
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 4.9e-08 61.2 42 66.7
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 8.3e-08 60.5 95 33.7
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 8.3e-08 60.5 40 65.0
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 1.1e-07 60.1 42 61.9
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 1.1e-07 60.1 41 65.9
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 3.1e-07 58.5 40 60.0
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 5.4e-07 57.8 42 61.9
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 9.2e-07 57.0 88 39.8
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.2e-06 56.6 40 57.5
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.2e-06 56.6 40 57.5
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 1.6e-06 56.2 77 39.0
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 5.9e-06 54.3 41 56.1


User provided reference genes

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