Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 6.8e-93 344.0 172 100.0
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 4.4e-68 261.5 172 76.2
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 5.8e-68 261.2 198 69.2
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 1.4e-66 256.5 198 67.2
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 1.4e-66 256.5 198 69.2
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 2.4e-66 255.8 200 68.0
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 2.4e-66 255.8 198 68.2
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 2.4e-66 255.8 198 68.2
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 3.2e-66 255.4 188 70.7
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 3.5e-65 251.9 198 67.2
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 1.3e-64 250.0 198 65.2
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 2.3e-64 249.2 196 68.4
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 2.3e-64 249.2 198 65.2
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 6.6e-64 247.7 198 66.2
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 1.1e-63 246.9 198 67.2
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.4e-61 240.0 169 72.2
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 1.4e-61 240.0 198 62.6
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.8e-61 239.6 188 66.5
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.8e-61 239.6 198 63.1
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 2.4e-61 239.2 198 62.1
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 5.2e-61 238.0 172 68.6
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 5.2e-61 238.0 209 61.2
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 2.0e-60 236.1 207 58.0
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 3.4e-60 235.3 198 61.1
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 7.6e-60 234.2 198 62.6
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.3e-59 233.4 200 62.5
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 1.7e-59 233.0 196 62.2
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 4.9e-59 231.5 199 61.3
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 8.4e-59 230.7 170 71.2
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 2.4e-58 229.2 198 60.6
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 4.2e-58 228.4 201 60.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 1.2e-57 226.9 197 61.4
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 1.2e-57 226.9 195 61.0
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.2e-57 226.9 199 61.8
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 1.6e-57 226.5 195 61.0
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 2.7e-57 225.7 198 60.1
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 4.6e-57 224.9 199 60.8
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 7.8e-57 224.2 172 68.0
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 7.8e-57 224.2 199 58.3
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 1.3e-56 223.4 198 59.1
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 3.0e-56 222.2 203 57.6
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 3.0e-56 222.2 195 61.0
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 6.6e-56 221.1 203 57.6
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 1.5e-55 219.9 199 57.8
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 1.5e-55 219.9 197 59.9
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 1.9e-55 219.5 198 56.1
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 2.5e-55 219.2 203 57.1
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 3.3e-55 218.8 196 59.7
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 1.6e-54 216.5 199 59.8
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 2.1e-54 216.1 198 58.6
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 2.8e-54 215.7 199 57.8
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 3.6e-54 215.3 198 56.1
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 3.6e-54 215.3 200 60.5
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 6.2e-54 214.5 198 57.1
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 8.1e-54 214.2 198 58.6
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 1.1e-53 213.8 172 60.5
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.8e-53 213.0 184 60.3
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 1.8e-53 213.0 195 59.0
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 1.8e-53 213.0 174 66.1
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 3.1e-53 212.2 196 59.2
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 3.1e-53 212.2 195 59.0
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 5.3e-53 211.5 173 59.0
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 5.3e-53 211.5 197 54.8
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 9.0e-53 210.7 197 57.4
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.2e-52 210.3 194 58.2
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.2e-52 210.3 193 58.0
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 2.0e-52 209.5 194 58.2
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.4e-52 208.8 189 56.6
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 3.4e-52 208.8 198 55.1
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 4.5e-52 208.4 195 57.4
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 4.5e-52 208.4 198 55.6
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 4.5e-52 208.4 183 59.6
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 9.9e-52 207.2 207 55.6
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.7e-51 206.5 260 47.3
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 2.9e-51 205.7 192 56.2
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 2.9e-51 205.7 198 55.6
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 3.8e-51 205.3 191 57.6
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 3.8e-51 205.3 197 54.3
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 4.9e-51 204.9 207 56.0
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 4.9e-51 204.9 198 57.6
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.1e-50 203.8 207 54.6
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.1e-50 203.8 192 58.3
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.9e-50 203.0 196 56.1
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 2.4e-50 202.6 211 54.0
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 2.4e-50 202.6 193 58.5
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 5.4e-50 201.4 214 52.8
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 7.1e-50 201.1 211 54.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 7.1e-50 201.1 198 54.5
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 9.3e-50 200.7 198 52.0
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 7.9e-49 197.6 194 55.7
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.0e-48 197.2 214 52.8
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 1.9e-47 193.0 195 54.9
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 2.5e-47 192.6 195 53.3
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 3.3e-47 192.2 187 58.8
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 7.4e-47 191.0 199 50.8
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.1e-46 189.5 140 65.0
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 8.1e-46 187.6 197 52.8
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 4.0e-45 185.3 199 53.3
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 4.0e-45 185.3 190 53.2
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 6.9e-45 184.5 196 53.1
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 9.0e-45 184.1 201 51.2
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.5e-44 183.3 199 52.8
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.5e-44 183.3 190 52.1
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 2.0e-44 183.0 299 40.1
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 3.4e-44 182.2 177 56.5
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 5.8e-44 181.4 190 51.6
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 2.2e-43 179.5 159 57.2
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 3.8e-43 178.7 198 54.0
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 6.4e-43 177.9 163 60.1
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 6.4e-43 177.9 198 52.0
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 8.4e-43 177.6 203 51.2
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 1.1e-42 177.2 193 52.8
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 3.2e-42 175.6 198 51.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 9.3e-42 174.1 196 51.5
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 9.3e-42 174.1 196 51.5
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 1.2e-41 173.7 198 49.0
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 2.7e-41 172.6 196 51.0
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 7.9e-41 171.0 196 50.5
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.0e-40 170.6 197 49.2
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 3.0e-40 169.1 199 50.8
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.7e-35 153.3 187 48.7
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 7.9e-33 144.4 116 60.3
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 1.0e-32 144.1 159 50.9
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.7e-31 138.3 100 69.0
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 6.3e-30 134.8 145 51.7
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 8.2e-30 134.4 100 67.0
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 4.1e-29 132.1 173 43.4
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.4e-28 129.0 133 52.6
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 3.4e-28 129.0 133 52.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 4.5e-28 128.6 105 60.0
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 9.3e-26 120.9 91 63.7
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 6.1e-25 118.2 172 45.3
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 1.0e-24 117.5 178 40.4
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 3.7e-22 109.0 111 50.5
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 4.5e-20 102.1 132 39.4
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 1.4e-18 97.1 124 48.4
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 1.9e-18 96.7 75 62.7
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 1.9e-18 96.7 75 62.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 4.2e-18 95.5 115 41.7
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 2.1e-17 93.2 61 77.0
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 7.9e-17 91.3 74 63.5
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 1.8e-13 80.1 199 28.6
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 5.3e-13 78.6 104 43.3
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 5.3e-13 78.6 104 43.3
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.2e-12 77.4 130 36.9
CSS0030909 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-12 77.4 100 47.0
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.5e-12 77.0 77 59.7
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 5.9e-12 75.1 103 40.8
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.9e-08 62.4 112 33.9
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 6.3e-06 55.1 64 46.9
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 8.2e-06 54.7 33 69.7


User provided reference genes

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