Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 8.9e-121 438.3 305 100.0
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 2.7e-109 400.2 304 94.4
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 1.6e-69 268.1 309 73.1
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 1.9e-59 234.6 312 67.6
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.5e-48 198.4 313 63.3
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 1.7e-47 194.9 314 63.7
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 1.8e-44 184.9 304 58.6
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 2.3e-44 184.5 293 64.2
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 5.2e-44 183.3 306 61.8
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 6.7e-44 183.0 315 62.9
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 4.8e-42 176.8 313 60.1
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 8.2e-42 176.0 307 63.2
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 1.4e-41 175.3 306 60.8
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.6e-40 171.8 305 59.3
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 7.7e-40 169.5 307 57.3
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 1.0e-39 169.1 300 62.0
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 3.8e-39 167.2 309 58.3
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 5.0e-39 166.8 302 60.6
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 4.2e-38 163.7 305 58.7
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 1.6e-37 161.8 254 66.1
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 3.6e-37 160.6 301 58.1
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.5e-35 155.2 296 59.5
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 2.0e-35 154.8 305 57.4
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 2.6e-35 154.5 303 56.4
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 5.7e-35 153.3 303 59.4
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 3.7e-34 150.6 298 57.7
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 8.2e-34 149.4 305 58.4
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 4.1e-33 147.1 305 56.7
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 7.0e-33 146.4 308 57.5
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 9.1e-33 146.0 306 54.2
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 1.6e-32 145.2 297 57.6
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 2.7e-32 144.4 300 48.0
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 3.5e-32 144.1 305 56.4
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 7.7e-32 142.9 174 45.4
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 7.7e-32 142.9 302 55.3
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 1.7e-31 141.7 206 75.7
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 8.5e-31 139.4 313 56.2
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 2.5e-30 137.9 247 64.8
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 1.6e-29 135.2 247 64.4
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 1.6e-29 135.2 299 56.2
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 2.1e-29 134.8 298 56.4
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 4.7e-29 133.7 306 54.9
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 1.8e-28 131.7 300 57.3
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 2.3e-28 131.3 296 55.4
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 8.8e-28 129.4 312 52.9
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 1.2e-27 129.0 180 45.6
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 1.5e-27 128.6 299 54.8
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 2.0e-27 128.3 256 62.1
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 4.4e-27 127.1 312 52.9
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 9.8e-27 125.9 168 45.2
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 1.3e-26 125.6 288 58.3
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 4.8e-26 123.6 207 71.5
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 4.8e-26 123.6 234 65.4
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 1.1e-25 122.5 203 72.4
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 1.1e-25 122.5 303 55.4
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 2.4e-25 121.3 303 55.8
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 2.4e-25 121.3 232 56.0
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 2.4e-25 121.3 301 50.8
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 7.0e-25 119.8 318 46.5
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 9.1e-25 119.4 300 52.3
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 1.2e-24 119.0 305 52.8
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 2.7e-24 117.9 315 52.7
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 2.7e-24 117.9 316 42.4
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 5.9e-24 116.7 300 54.7
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 7.7e-24 116.3 300 52.0
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 7.7e-24 116.3 223 58.3
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 2.3e-23 114.8 298 52.3
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 3.8e-23 114.0 300 51.7
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 4.2e-22 110.5 118 50.0
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 7.2e-22 109.8 299 50.2
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 9.5e-22 109.4 289 52.6
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 1.6e-21 108.6 303 51.5
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 2.6e-19 101.3 296 51.4
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 9.8e-19 99.4 265 47.9
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 9.8e-19 99.4 108 51.9
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 2.8e-18 97.8 235 60.0
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 2.8e-18 97.8 270 47.0
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 3.7e-18 97.4 292 50.3
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 8.3e-18 96.3 270 54.8
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 8.3e-18 96.3 116 44.0
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 7.8e-16 89.7 216 52.8
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 1.0e-15 89.4 297 50.2
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 2.9e-15 87.8 293 50.5
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 6.6e-15 86.7 88 54.5
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 6.6e-15 86.7 170 32.4
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 5.6e-14 83.6 191 62.8
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 9.5e-14 82.8 89 52.8
BcaNung01260 Brassica carinata HOM05D000880 ORTHO05D009684 2.8e-13 81.3 162 34.0
DCAR_017077 Daucus carota HOM05D000880 ORTHO05D009684 3.0e-12 77.8 59 61.0
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 4.0e-12 77.4 291 48.8
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 4.0e-12 77.4 293 49.5
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 1.5e-11 75.5 174 30.5
Cpa.g.sc10.208 Carica papaya HOM05D000880 ORTHO05D009684 2.4e-09 68.2 74 52.7
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 2.7e-08 64.7 150 26.7
DCAR_017076 Daucus carota HOM05D000880 ORTHO05D009684 1.7e-07 62.0 107 38.3


User provided reference genes

Program Settings