Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 3.2e-55 219.2 220 100.0
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 1.7e-40 170.2 207 94.7
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 5.9e-33 145.2 206 87.4
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 7.7e-33 144.8 207 84.1
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 2.9e-32 142.9 207 75.4
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 2.9e-32 142.9 207 84.5
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 6.5e-32 141.7 207 77.8
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 3.6e-30 136.0 207 76.8
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 6.1e-30 135.2 207 76.8
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 2.3e-29 133.3 207 77.3
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 2.3e-29 133.3 207 82.6
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 4.0e-29 132.5 206 85.0
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 8.8e-29 131.3 207 74.4
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.5e-28 130.6 207 70.0
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.5e-28 130.6 207 74.4
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 2.0e-28 130.2 204 75.5
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 5.7e-28 128.6 206 83.0
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 3.7e-27 125.9 204 77.9
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.1e-26 124.4 202 77.7
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.4e-26 124.0 207 82.6
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 1.4e-26 124.0 207 84.1
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 1.8e-26 123.6 202 77.2
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 5.4e-26 122.1 202 77.2
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 2.7e-25 119.8 207 78.3
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 3.5e-25 119.4 207 76.3
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 4.5e-25 119.0 200 77.0
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 5.9e-25 118.6 217 69.1
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 1.0e-24 117.9 207 82.6
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 1.3e-24 117.5 207 79.7
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 2.3e-24 116.7 199 80.9
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 5.0e-24 115.5 207 69.6
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 1.5e-23 114.0 207 78.3
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 1.5e-23 114.0 202 79.7
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 3.3e-23 112.8 218 67.9
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 5.6e-23 112.1 203 80.8
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 5.6e-23 112.1 207 79.2
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 7.3e-23 111.7 206 72.3
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 9.5e-23 111.3 201 61.2
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 1.2e-22 110.9 207 78.3
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 1.6e-22 110.5 193 76.2
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 2.1e-22 110.2 207 70.5
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 2.1e-22 110.2 208 46.2
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 2.1e-22 110.2 208 46.2
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 2.1e-22 110.2 208 46.2
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 2.8e-22 109.8 206 71.8
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 2.8e-22 109.8 207 70.5
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 8.0e-22 108.2 212 71.2
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.0e-21 107.8 208 44.7
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.0e-21 107.8 208 44.7
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.4e-21 107.5 208 68.8
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 4.0e-21 105.9 208 68.8
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 5.2e-21 105.5 208 69.7
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 8.9e-21 104.8 204 66.7
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.5e-20 104.0 208 69.7
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 2.0e-20 103.6 195 81.0
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 2.2e-19 100.1 208 63.0
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 3.2e-18 96.3 197 70.1
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 1.6e-17 94.0 178 86.0
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.6e-17 94.0 178 86.0
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 5.9e-17 92.0 63 60.3
Gorai.005G136500 Gossypium raimondii HOM05D002444 ORTHO05D009235 5.9e-17 92.0 63 60.3
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 8.6e-16 88.2 47 85.1
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 1.1e-15 87.8 207 77.3
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 1.9e-15 87.0 50 84.0
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.9e-15 87.0 47 89.4
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 1.2e-14 84.3 188 68.1
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 1.6e-14 84.0 63 60.3
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 1.6e-14 84.0 46 82.6
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 1.6e-14 84.0 46 82.6
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 1.6e-14 84.0 50 82.0
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 2.1e-14 83.6 207 68.6
Phvul.003G282300 Phaseolus vulgaris HOM05D002444 ORTHO05D009235 2.1e-14 83.6 63 55.6
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 3.6e-14 82.8 46 87.0
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 3.6e-14 82.8 194 69.6
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 8.0e-14 81.6 48 79.2
Atru.chr2.1158 Acer truncatum HOM05D002444 ORTHO05D009235 1.0e-13 81.3 62 59.7
Atru.chr2.1176 Acer truncatum HOM05D002444 ORTHO05D009235 1.0e-13 81.3 62 59.7
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.4e-13 80.9 50 74.0
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.8e-13 80.5 49 79.6
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 5.2e-13 79.0 50 72.0
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 6.8e-13 78.6 50 72.0
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 6.8e-13 78.6 55 65.5
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 5.8e-12 75.5 42 83.3
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 9.8e-12 74.7 50 70.0
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 1.7e-11 73.9 44 79.5
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 1.7e-11 73.9 48 75.0
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 2.2e-11 73.6 45 75.6
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 2.2e-11 73.6 44 84.1
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 4.9e-11 72.4 43 81.4
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 1.4e-10 70.9 50 66.0
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 2.4e-10 70.1 50 66.0
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 1.6e-09 67.4 46 69.6
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 4.6e-09 65.9 39 82.1
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 3.9e-08 62.8 49 57.1
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 1.2e-06 57.8 59 40.7
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 1.2e-06 57.8 35 82.9


User provided reference genes

Program Settings