Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C671G13 Lonicera japonica HOM05D005803 ORTHO05D008090 3.9e-282 974.2 499 100.0
GSVIVG01017783001 Vitis vinifera HOM05D005803 ORTHO05D008090 3.4e-238 828.2 514 81.5
CSS0017376 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.4e-236 822.8 514 80.9
CSS0035312 Camellia sinensis var. sinensis HOM05D005803 ORTHO05D008090 1.4e-236 822.8 514 80.9
Hma1.2p1_0698F.1_g205430 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 5.7e-233 810.8 514 81.1
Cfa015360 Carpinus fangiana HOM05D005803 ORTHO05D008090 1.8e-231 805.8 514 79.8
Ciclev10004654m.g Citrus clementina HOM05D005803 ORTHO05D008090 9.1e-231 803.5 515 79.2
Gorai.011G187600 Gossypium raimondii HOM05D005803 ORTHO05D008090 2.6e-230 802.0 515 79.2
QL06p007721 Quercus lobata HOM05D005803 ORTHO05D008090 5.9e-230 800.8 514 79.4
Manes.15G015300 Manihot esculenta HOM05D005803 ORTHO05D008090 7.7e-230 800.4 514 80.0
Gohir.A10G161600 Gossypium hirsutum HOM05D005803 ORTHO05D008090 3.8e-229 798.1 515 78.8
CsaV3_6G017350 Cucumis sativus L. HOM05D005803 ORTHO05D008090 5.0e-229 797.7 514 79.2
Thecc.04G279700 Theobroma cacao HOM05D005803 ORTHO05D008090 6.5e-229 797.3 515 78.8
Dinv44408 Davidia involucrata HOM05D005803 ORTHO05D008090 4.2e-228 794.7 514 78.6
VMungo0540G0998 Vigna mungo HOM05D005803 ORTHO05D008090 1.8e-226 789.3 514 78.4
Potri.008G215100 Populus trichocarpa HOM05D005803 ORTHO05D008090 3.0e-226 788.5 514 79.4
Sed0014775 Sechium edule HOM05D005803 ORTHO05D008090 3.9e-226 788.1 514 78.2
Haze_01246 Corylus avellana HOM05D005803 ORTHO05D008090 1.5e-225 786.2 553 74.0
Actinidia40241 Actinidia chinensis HOM05D005803 ORTHO05D008090 2.6e-225 785.4 510 79.2
Atru.chr4.2785 Acer truncatum HOM05D005803 ORTHO05D008090 3.3e-225 785.0 519 77.6
Psat1g187960 Pisum sativum HOM05D005803 ORTHO05D008090 3.3e-225 785.0 514 77.6
Sabra08G0155700 Salix brachista HOM05D005803 ORTHO05D008090 5.7e-225 784.3 514 78.4
Prupe.1G140200 Prunus persica HOM05D005803 ORTHO05D008090 7.4e-225 783.9 515 79.4
TWI09G0274 Tripterygium wilfordii HOM05D005803 ORTHO05D008090 1.7e-224 782.7 516 78.7
CAN.G223.20 Capsicum annuum HOM05D005803 ORTHO05D008090 4.8e-224 781.2 515 78.1
Lj6g0003207 Lotus japonicus HOM05D005803 ORTHO05D008090 8.2e-224 780.4 514 77.4
Glyma.15G096000 Glycine max HOM05D005803 ORTHO05D008090 4.1e-223 778.1 515 78.4
PGR031G1735 Punica granatum HOM05D005803 ORTHO05D008090 4.1e-223 778.1 515 77.7
Glyma.13G216500 Glycine max HOM05D005803 ORTHO05D008090 1.2e-222 776.5 515 78.1
arahy.Tifrunner.gnm1.ann1.7QB25Q Arachis hypogaea HOM05D005803 ORTHO05D008090 1.6e-222 776.2 512 77.1
arahy.Tifrunner.gnm1.ann1.FSUI8I Arachis hypogaea HOM05D005803 ORTHO05D008090 1.6e-222 776.2 512 77.1
Phvul.006G162900 Phaseolus vulgaris HOM05D005803 ORTHO05D008090 1.6e-222 776.2 514 76.1
TAR365G0996 Trochodendron aralioides HOM05D005803 ORTHO05D008090 3.5e-222 775.0 514 77.2
DCAR_027096 Daucus carota HOM05D005803 ORTHO05D008090 4.5e-222 774.6 526 77.2
Sopen01g029400 Solanum pennellii HOM05D005803 ORTHO05D008090 4.5e-222 774.6 515 76.9
Nn3g21354 Nelumbo nucifera HOM05D005803 ORTHO05D008090 7.7e-222 773.9 498 78.9
Potri.010G022100 Populus trichocarpa HOM05D005803 ORTHO05D008090 1.7e-221 772.7 514 77.8
Lsat_1_v5_gn_5_69681 Lactuca sativa HOM05D005803 ORTHO05D008090 2.2e-221 772.3 514 77.0
Peaxi162Scf00386g00615 Petunia axillaris HOM05D005803 ORTHO05D008090 1.1e-220 770.0 514 77.0
Gohir.D10G168100 Gossypium hirsutum HOM05D005803 ORTHO05D008090 1.5e-220 769.6 515 77.5
Duzib151G0664 Durio zibethinus HOM05D005803 ORTHO05D008090 1.9e-220 769.2 515 77.9
ClCG06G005310 Citrullus lanatus HOM05D005803 ORTHO05D008090 3.2e-220 768.5 579 70.8
Sc19g0005000 Simmondsia chinensis HOM05D005803 ORTHO05D008090 3.2e-220 768.5 515 76.3
Ca_00559_v3 Cicer arietinum L. HOM05D005803 ORTHO05D008090 5.5e-220 767.7 514 76.7
MD16G1173300 Malus domestica HOM05D005803 ORTHO05D008090 7.2e-220 767.3 515 77.7
Lalb_Chr18g0055621 Lupinus albus HOM05D005803 ORTHO05D008090 8.0e-219 763.8 515 76.5
Eucgr.B01277 Eucalyptus grandis HOM05D005803 ORTHO05D008090 1.4e-218 763.1 515 75.5
RcHm_v2.0_Chr4g0421441 Rosa chinensis HOM05D005803 ORTHO05D008090 3.0e-218 761.9 515 77.5
CiPaw.01G151500 Carya illinoinensis HOM05D005803 ORTHO05D008090 1.5e-217 759.6 514 76.1
MD13G1171800 Malus domestica HOM05D005803 ORTHO05D008090 5.7e-217 757.7 515 76.9
FvH4_4g17530 Fragaria vesca HOM05D005803 ORTHO05D008090 1.1e-215 753.4 513 76.6
Rhsim04G0218200 Rhododendron simsii HOM05D005803 ORTHO05D008090 1.6e-214 749.6 565 71.9
FAN12G0977 Fragaria x ananassa HOM05D005803 ORTHO05D008090 5.0e-213 744.6 510 76.3
HanXRQChr13g0410111 Helianthus annuus HOM05D005803 ORTHO05D008090 6.5e-213 744.2 514 74.9
EL10Ac3g06553 Beta vulgaris HOM05D005803 ORTHO05D008090 8.5e-213 743.8 498 76.1
vmacro22476 Vaccinium macrocarpon HOM05D005803 ORTHO05D008090 1.5e-212 743.0 531 74.6
FAN07G1352 Fragaria x ananassa HOM05D005803 ORTHO05D008090 1.9e-212 742.7 518 75.3
Aqoxy5G00678 Aquilegia oxysepala HOM05D005803 ORTHO05D008090 3.2e-212 741.9 472 78.4
MSTRG.3937 Avicennia marina HOM05D005803 ORTHO05D008090 4.2e-212 741.5 518 73.6
Migut.G00189 Erythranthe guttata HOM05D005803 ORTHO05D008090 7.2e-212 740.7 516 73.1
CANSAT78G2259 Cannabis sativa HOM05D005803 ORTHO05D008090 1.0e-210 736.9 514 75.7
FAN12G3070 Fragaria x ananassa HOM05D005803 ORTHO05D008090 3.0e-210 735.3 513 75.4
FAN22G2255 Fragaria x ananassa HOM05D005803 ORTHO05D008090 6.8e-210 734.2 476 80.0
Cpa.g.sc1214.2 Carica papaya HOM05D005803 ORTHO05D008090 5.9e-206 721.1 515 73.8
Cc03_g02160 Coffea canephora HOM05D005803 ORTHO05D008090 1.5e-204 716.5 513 72.7
THA.LOC104820247 Tarenaya hassleriana HOM05D005803 ORTHO05D008090 7.2e-204 714.1 515 73.0
Ah.13g074480 Amaranthus hybridus HOM05D005803 ORTHO05D008090 9.5e-204 713.8 452 79.2
COL.COLO4_13910 Corchorus olitorius HOM05D005803 ORTHO05D008090 2.1e-203 712.6 519 71.1
MELO3C021349.2 Cucumis melo HOM05D005803 ORTHO05D008090 3.6e-203 711.8 614 63.8
PSO832G0201 Papaver somniferum HOM05D005803 ORTHO05D008090 1.3e-200 703.4 515 69.7
Medtr2g019850 Medicago truncatula HOM05D005803 ORTHO05D008090 1.7e-200 703.0 514 71.0
PSO210G1989 Papaver somniferum HOM05D005803 ORTHO05D008090 1.2e-198 696.8 515 69.1
Carub.0004s2114 Capsella rubella HOM05D005803 ORTHO05D008090 3.9e-197 691.8 515 71.1
HPP92_015179 Vanilla planifolia HOM05D005803 ORTHO05D008090 1.5e-196 689.9 514 70.0
MBI19_g01944_MAGBIO Magnolia biondii HOM05D005803 ORTHO05D008090 1.9e-196 689.5 514 70.4
Sp4g21440 Schrenkiella parvula HOM05D005803 ORTHO05D008090 4.3e-196 688.3 515 70.5
Nitab4.5_0000644g0090 Nicotiana tabacum HOM05D005803 ORTHO05D008090 5.6e-196 688.0 529 70.7
AT2G39090 Arabidopsis thaliana HOM05D005803 ORTHO05D008090 1.8e-194 682.9 515 70.1
BcaB02g09144 Brassica carinata HOM05D005803 ORTHO05D008090 5.2e-194 681.4 515 69.9
A05p07190 Brassica napus HOM05D005803 ORTHO05D008090 1.2e-193 680.2 516 70.2
BraA05t19684Z Brassica rapa HOM05D005803 ORTHO05D008090 1.2e-193 680.2 516 70.2
Thhalv10017916m.g Eutrema salsugineum HOM05D005803 ORTHO05D008090 1.5e-193 679.9 515 70.1
ATR0706G085 Amborella trichopoda HOM05D005803 ORTHO05D008090 5.4e-191 671.4 512 66.8
CARHR133850 Cardamine hirsuta HOM05D005803 ORTHO05D008090 1.2e-190 670.2 515 68.2
AL4G36390 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 3.5e-190 668.7 504 71.0
BcaC02g12039 Brassica carinata HOM05D005803 ORTHO05D008090 3.5e-190 668.7 515 68.9
SGA_v2.0_scaffold57G20231 Striga asiatica HOM05D005803 ORTHO05D008090 3.0e-189 665.6 385 84.7
BolC4t22455H Brassica oleracea HOM05D005803 ORTHO05D008090 6.6e-189 664.5 516 68.8
C04p08600 Brassica napus HOM05D005803 ORTHO05D008090 8.6e-189 664.1 516 68.8
Aa31LG5G20510 Aethionema arabicum HOM05D005803 ORTHO05D008090 4.7e-187 658.3 529 66.9
unitig_26.g9058 Utricularia gibba HOM05D005803 ORTHO05D008090 1.1e-170 604.0 407 72.2
Hma1.2p1_0698F.1_g205440 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 3.1e-170 602.4 347 87.3
Os05g0149900 Oryza sativa ssp. japonica HOM05D005803 ORTHO05D008090 2.9e-160 569.3 387 72.1
Mapoly0073s0077 Marchantia polymorpha HOM05D005803 ORTHO05D008090 3.1e-154 549.3 513 56.9
AUR62042651 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.2e-151 538.9 506 59.3
Pp3c23_6980 Physcomitrium patens HOM05D005803 ORTHO05D008090 9.3e-151 537.7 512 55.9
AagrBONN_evm.TU.Sc2ySwM_228.1968 Anthoceros agrestis HOM05D005803 ORTHO05D008090 2.5e-143 513.1 514 54.1
SMO119G0467 Selaginella moellendorffii HOM05D005803 ORTHO05D008090 3.3e-140 502.7 520 53.5
CBR_g37168 Chara braunii HOM05D005803 ORTHO05D000048 2.5e-135 486.5 521 49.7
AUR62043505 Chenopodium quinoa HOM05D005803 ORTHO05D008090 4.3e-132 475.7 335 71.9
BcaNung07183 Brassica carinata HOM05D005803 ORTHO05D008090 2.2e-128 463.4 525 55.0
Nitab4.5_0000829g0230 Nicotiana tabacum HOM05D005803 ORTHO05D008090 1.4e-127 460.7 293 80.5
ECA240G2219 Erigeron canadensis HOM05D005803 ORTHO05D008090 1.8e-122 443.7 339 67.8
TPR.G1478 Trifolium pratense HOM05D005803 ORTHO05D008090 2.4e-122 443.4 259 86.9
Zm00001eb418180 Zea mays HOM05D005803 ORTHO05D008090 4.8e-115 419.1 356 59.3
CDE06G0920 Ceratophyllum demersum HOM05D005803 ORTHO05D008090 4.5e-113 412.5 302 68.5
TPR.G35525 Trifolium pratense HOM05D005803 ORTHO05D008090 2.7e-94 350.1 260 68.5
MCO16G459 Micromonas commoda HOM05D005803 ORTHO05D008090 2.0e-76 290.8 479 38.4
Oeu032270.1 Olea europaea HOM05D005803 ORTHO05D008090 3.9e-64 250.0 144 82.6
Solyc01g067490.4 Solanum lycopersicum HOM05D005803 ORTHO05D008090 3.9e-64 250.0 198 67.7
SEGI_31260 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 3.2e-58 230.3 180 62.2
Hma1.2p1_2251F.1_g318140 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.3e-55 219.2 130 83.8
Oeu029260.1 Olea europaea HOM05D005803 ORTHO05D008090 9.6e-55 218.8 160 73.1
ECA240G4135 Erigeron canadensis HOM05D005803 ORTHO05D008090 2.9e-51 207.2 153 72.5
TPR.G29244 Trifolium pratense HOM05D005803 ORTHO05D008090 2.6e-36 157.5 153 58.2
TPR.G29241 Trifolium pratense HOM05D005803 ORTHO05D008090 3.8e-35 153.7 90 76.7
BcaC07g41552 Brassica carinata HOM05D000238 ORTHO05D020090 7.4e-31 139.4 175 49.1
Hma1.2p1_0055F.1_g031500 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.4e-31 139.4 89 78.7
BcaC09g48072 Brassica carinata HOM05D005803 ORTHO05D020090 1.1e-29 135.6 172 48.8
C04p44010 Brassica napus HOM05D005803 ORTHO05D020090 4.5e-28 130.2 170 50.0
C06p17250 Brassica napus HOM05D005803 ORTHO05D020090 7.6e-28 129.4 151 51.7
BolC6t36924H Brassica oleracea HOM05D005803 ORTHO05D020090 7.6e-28 129.4 151 51.7
SEGI_25333 Sequoiadendron giganteum HOM05D005803 ORTHO05D020090 1.1e-23 115.5 79 69.6
AL92U10050 Arabidopsis lyrata HOM05D005803 ORTHO05D008090 1.9e-18 98.2 120 53.3
BcaC08g44302 Brassica carinata HOM05D005803 ORTHO05D020090 5.5e-18 96.7 52 88.5
Atru.chr4.2782 Acer truncatum HOM05D005803 ORTHO05D008090 9.3e-18 95.9 80 65.0
Hma1.2p1_1012F.1_g247600 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 2.3e-16 91.3 89 58.4
SEGI_29512 Sequoiadendron giganteum HOM05D005803 ORTHO05D008090 5.1e-16 90.1 81 59.3
THA.LOC104814565 Tarenaya hassleriana HOM05D003301 ORTHO05D003665 2.6e-07 61.2 285 24.2
Hma1.2p1_2251F.1_g318130 Hydrangea macrophylla HOM05D005803 ORTHO05D008090 7.4e-07 59.7 129 34.9
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 9.7e-07 59.3 162 23.5
Hund10083 Selenicereus undatus HOM05D003301 ORTHO05D003665 1.3e-06 58.9 283 23.0
Phvul.004G048400 Phaseolus vulgaris HOM05D003301 ORTHO05D003665 1.7e-06 58.5 296 24.0
GSVIVG01015317001 Vitis vinifera HOM05D003301 ORTHO05D003665 8.2e-06 56.2 285 24.2


User provided reference genes

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