Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C609T3 Lonicera japonica HOM05D001723 ORTHO05D001706 2.5e-33 144.8 72 100.0
CSS0039979 Camellia sinensis var. sinensis HOM05D001723 ORTHO05D001706 5.3e-15 84.0 48 79.2
Dinv13991 Davidia involucrata HOM05D001723 ORTHO05D001706 3.4e-14 81.3 48 81.2
Rhsim04G0202900 Rhododendron simsii HOM05D001723 ORTHO05D001706 1.3e-13 79.3 48 77.1
Hma1.2p1_3079F.1_g332430 Hydrangea macrophylla HOM05D001723 ORTHO05D001706 1.7e-13 79.0 45 84.4
TWI09G0142 Tripterygium wilfordii HOM05D001723 ORTHO05D001706 3.8e-13 77.8 44 84.1
GSVIVG01017967001 Vitis vinifera HOM05D001723 ORTHO05D001706 3.8e-13 77.8 48 77.1
Rhsim02G0023800 Rhododendron simsii HOM05D001723 ORTHO05D001706 6.5e-13 77.0 42 83.3
Lj3C737G2 Lonicera japonica HOM05D001723 ORTHO05D001706 8.5e-13 76.6 48 77.1
Cc03_g03720 Coffea canephora HOM05D001723 ORTHO05D001706 1.1e-12 76.3 42 83.3
TWI73G0550 Tripterygium wilfordii HOM05D001723 ORTHO05D001706 1.4e-12 75.9 44 81.8
Actinidia40150 Actinidia chinensis HOM05D001723 ORTHO05D001706 1.9e-12 75.5 48 77.1
Actinidia36961 Actinidia chinensis HOM05D001723 ORTHO05D001706 2.5e-12 75.1 44 79.5
Lsat_1_v5_gn_5_148520 Lactuca sativa HOM05D001723 ORTHO05D001706 2.5e-12 75.1 44 84.1
Oeu011622.1 Olea europaea HOM05D000013 ORTHO05D000011 3.2e-12 74.7 57 66.7
Oeu011623.1 Olea europaea HOM05D001723 ORTHO05D001706 3.2e-12 74.7 57 66.7
Oeu011624.2 Olea europaea HOM05D001723 ORTHO05D001706 3.2e-12 74.7 57 66.7
ECA234G2775 Erigeron canadensis HOM05D000917 ORTHO05D000764 4.2e-12 74.3 44 79.5
Nn1g02293 Nelumbo nucifera HOM05D001723 ORTHO05D001706 4.2e-12 74.3 48 75.0
MSTRG.21852 Avicennia marina HOM05D001723 ORTHO05D001706 7.2e-12 73.6 41 80.5
Ciclev10005476m.g Citrus clementina HOM05D001723 ORTHO05D001706 7.2e-12 73.6 44 79.5
Nitab4.5_0000043g0200 Nicotiana tabacum HOM05D001723 ORTHO05D001706 7.2e-12 73.6 48 72.9
Atru.chr4.2473 Acer truncatum HOM05D001723 ORTHO05D001706 9.4e-12 73.2 42 83.3
Atru.ctg752_3.87 Acer truncatum HOM05D001723 ORTHO05D001706 9.4e-12 73.2 42 83.3
Migut.N00180 Erythranthe guttata HOM05D001723 ORTHO05D001706 9.4e-12 73.2 41 80.5
ClCG05G005180 Citrullus lanatus HOM05D001723 ORTHO05D001706 1.6e-11 72.4 54 70.4
PSO761G0351 Papaver somniferum HOM05D001723 ORTHO05D001706 1.6e-11 72.4 42 81.0
COL.COLO4_04249 Corchorus olitorius HOM05D001723 ORTHO05D001706 2.1e-11 72.0 39 82.1
Oeu031233.1 Olea europaea HOM05D001723 ORTHO05D001706 2.1e-11 72.0 42 76.2
PGSC0003DMG400011823 Solanum tuberosum HOM05D001723 ORTHO05D001706 2.1e-11 72.0 65 55.4
Thecc.04G231000 Theobroma cacao HOM05D001723 ORTHO05D001706 2.1e-11 72.0 39 82.1
AL7G40900 Arabidopsis lyrata HOM05D001723 ORTHO05D001706 2.7e-11 71.6 64 62.5
AT4G14930 Arabidopsis thaliana HOM05D001723 ORTHO05D001706 2.7e-11 71.6 64 62.5
Potri.010G088000 Populus trichocarpa HOM05D001723 ORTHO05D001706 2.7e-11 71.6 40 82.5
Sabra10G0054800 Salix brachista HOM05D001723 ORTHO05D001706 2.7e-11 71.6 40 82.5
PGSC0003DMG400030079 Solanum tuberosum HOM05D001723 ORTHO05D001706 2.7e-11 71.6 48 68.8
BcaC07g37861 Brassica carinata HOM05D001723 ORTHO05D001706 3.6e-11 71.2 64 62.5
A08p11540 Brassica napus HOM05D001723 ORTHO05D001706 3.6e-11 71.2 64 62.5
BolC8t48252H Brassica oleracea HOM05D001723 ORTHO05D001706 3.6e-11 71.2 64 62.5
BraA08t33146Z Brassica rapa HOM05D001723 ORTHO05D001706 3.6e-11 71.2 64 62.5
A01p22610 Brassica napus HOM05D001723 ORTHO05D001706 4.6e-11 70.9 64 62.5
BraA01t02174Z Brassica rapa HOM05D001723 ORTHO05D001706 4.6e-11 70.9 64 62.5
DCAR_024152 Daucus carota HOM05D001723 ORTHO05D001706 4.6e-11 70.9 40 82.5
Thhalv10025783m.g Eutrema salsugineum HOM05D001723 ORTHO05D001706 4.6e-11 70.9 64 60.9
HanXRQChr04g0110441 Helianthus annuus HOM05D001723 ORTHO05D001706 4.6e-11 70.9 39 84.6
Solyc09g075990.3 Solanum lycopersicum HOM05D001723 ORTHO05D001706 4.6e-11 70.9 48 68.8
CAN.G907.2 Capsicum annuum HOM05D001723 ORTHO05D001706 6.1e-11 70.5 42 76.2
CARHR221540 Cardamine hirsuta HOM05D001723 ORTHO05D001706 6.1e-11 70.5 64 60.9
CiPaw.01G165400 Carya illinoinensis HOM05D001723 ORTHO05D001706 6.1e-11 70.5 40 82.5
PGR004G2010 Punica granatum HOM05D001723 ORTHO05D001706 6.1e-11 70.5 45 75.6
SalBow3G4500 Salvia bowleyana HOM05D001723 ORTHO05D001706 6.1e-11 70.5 41 75.6
Ah.04g154540 Amaranthus hybridus HOM05D001723 ORTHO05D001706 7.9e-11 70.1 39 84.6
Duzib212G0806 Durio zibethinus HOM05D001723 ORTHO05D001706 7.9e-11 70.1 39 79.5
Eucgr.H03485 Eucalyptus grandis HOM05D001723 ORTHO05D001706 7.9e-11 70.1 42 76.2
Sed0011568 Sechium edule HOM05D001723 ORTHO05D001706 7.9e-11 70.1 55 67.3
CsaV3_3G013340 Cucumis sativus L. HOM05D001723 ORTHO05D001706 1.0e-10 69.7 54 68.5
MD16G1192900 Malus domestica HOM05D001723 ORTHO05D001706 1.0e-10 69.7 44 72.7
Potri.010G088100 Populus trichocarpa HOM05D001723 ORTHO05D001706 1.0e-10 69.7 40 80.0
SGA_v2.0_scaffold257G45721 Striga asiatica HOM05D001723 ORTHO05D001706 1.0e-10 69.7 40 77.5
Carub.0007s2718 Capsella rubella HOM05D001723 ORTHO05D001706 1.4e-10 69.3 43 76.7
HanXRQChr16g0513411 Helianthus annuus HOM05D001723 ORTHO05D001706 1.4e-10 69.3 44 75.0
MD13G1192300 Malus domestica HOM05D001723 ORTHO05D001706 1.4e-10 69.3 44 72.7
Sp7g13080 Schrenkiella parvula HOM05D001723 ORTHO05D001706 1.4e-10 69.3 42 78.6
Sopen06g019370 Solanum pennellii HOM05D001723 ORTHO05D001706 1.4e-10 69.3 61 59.0
CDE05G2834 Ceratophyllum demersum HOM05D001723 ORTHO05D001706 1.8e-10 68.9 40 77.5
Gohir.A09G056000 Gossypium hirsutum HOM05D001723 ORTHO05D001706 1.8e-10 68.9 48 68.8
Gorai.N008600 Gossypium raimondii HOM05D001723 ORTHO05D001706 1.8e-10 68.9 48 68.8
Manes.15G028700 Manihot esculenta HOM05D001723 ORTHO05D001706 1.8e-10 68.9 44 72.7
RcHm_v2.0_Chr4g0416341 Rosa chinensis HOM05D001723 ORTHO05D001706 1.8e-10 68.9 45 71.1
Solyc06g054250.4 Solanum lycopersicum HOM05D001723 ORTHO05D001706 1.8e-10 68.9 61 57.4
Aa31LG9G2390 Aethionema arabicum HOM05D001723 ORTHO05D001706 2.3e-10 68.6 42 78.6
Gohir.D09G055200 Gossypium hirsutum HOM05D001723 ORTHO05D001706 2.3e-10 68.6 48 68.8
unitig_748.g8542 Utricularia gibba HOM05D001723 ORTHO05D001706 2.3e-10 68.6 39 79.5
Peaxi162Scf00192g01118 Petunia axillaris HOM05D001723 ORTHO05D001706 3.0e-10 68.2 43 72.1
QL06p002632 Quercus lobata HOM05D001723 ORTHO05D001706 3.0e-10 68.2 62 56.5
Sopen09g030820 Solanum pennellii HOM05D001723 ORTHO05D001706 3.0e-10 68.2 48 66.7
Nitab4.5_0000321g0100 Nicotiana tabacum HOM05D001723 ORTHO05D001706 3.9e-10 67.8 42 73.8
Sed0024117 Sechium edule HOM05D001723 ORTHO05D001706 3.9e-10 67.8 54 63.0
Hund12135 Selenicereus undatus HOM05D001723 ORTHO05D001706 3.9e-10 67.8 43 74.4
Eucgr.H03483 Eucalyptus grandis HOM05D001723 ORTHO05D001706 5.1e-10 67.4 42 76.2
Prupe.1G013000 Prunus persica HOM05D001723 ORTHO05D001706 5.1e-10 67.4 45 66.7
CAN.G873.2 Capsicum annuum HOM05D001723 ORTHO05D001706 6.7e-10 67.0 40 75.0
Cpa.g.sc58.115 Carica papaya HOM05D001723 ORTHO05D001706 6.7e-10 67.0 44 72.7
AUR62033615 Chenopodium quinoa HOM05D001723 ORTHO05D001706 6.7e-10 67.0 38 84.2
AUR62038608 Chenopodium quinoa HOM05D001723 ORTHO05D001706 6.7e-10 67.0 38 84.2
BcaB04g18269 Brassica carinata HOM05D001723 ORTHO05D001706 8.8e-10 66.6 64 56.2
SalBow2G2943 Salvia bowleyana HOM05D001723 ORTHO05D001706 8.8e-10 66.6 41 75.6
THA.LOC104808540 Tarenaya hassleriana HOM05D001723 ORTHO05D001706 8.8e-10 66.6 42 76.2
CANSAT78G1709 Cannabis sativa HOM05D001723 ORTHO05D001706 1.1e-09 66.2 63 57.1
Peaxi162Scf00092g01118 Petunia axillaris HOM05D001723 ORTHO05D001706 1.1e-09 66.2 41 73.2
Haze_00907 Corylus avellana HOM05D001723 ORTHO05D001706 1.5e-09 65.9 44 68.2
DCAR_027213 Daucus carota HOM05D001723 ORTHO05D001706 1.5e-09 65.9 43 69.8
Nitab4.5_0008118g0040 Nicotiana tabacum HOM05D001723 ORTHO05D001706 1.5e-09 65.9 39 76.9
Cfa015637 Carpinus fangiana HOM05D001723 ORTHO05D001706 2.0e-09 65.5 44 68.2
ECA234G1047 Erigeron canadensis HOM05D001723 ORTHO05D001706 2.0e-09 65.5 44 77.3
Psat6g207840 Pisum sativum HOM05D001723 ORTHO05D001706 2.0e-09 65.5 44 65.9
ATR0737G072 Amborella trichopoda HOM05D001723 ORTHO05D001706 2.5e-09 65.1 40 72.5
EL10Ac3g06419 Beta vulgaris HOM05D001723 ORTHO05D001706 2.5e-09 65.1 39 76.9
Oeu023396.1 Olea europaea HOM05D001723 ORTHO05D001706 2.5e-09 65.1 35 85.7
TPR.G5535 Trifolium pratense HOM05D001723 ORTHO05D001706 2.5e-09 65.1 43 67.4
CANSAT78G0371 Cannabis sativa HOM05D001723 ORTHO05D001706 3.3e-09 64.7 63 55.6
DCAR_002387 Daucus carota HOM05D001723 ORTHO05D001706 3.3e-09 64.7 35 85.7
Glyma.01G238400 Glycine max HOM05D001723 ORTHO05D001706 3.3e-09 64.7 44 68.2
CAN.G873.1 Capsicum annuum HOM05D001723 ORTHO05D001706 4.3e-09 64.3 42 71.4
PGSC0003DMG400011824 Solanum tuberosum HOM05D001723 ORTHO05D001706 4.3e-09 64.3 42 71.4
Aqoxy2G03381 Aquilegia oxysepala HOM05D001723 ORTHO05D001706 5.7e-09 63.9 40 72.5
FvH4_4g15450 Fragaria vesca HOM05D001723 ORTHO05D001706 5.7e-09 63.9 39 74.4
FAN12G0266 Fragaria x ananassa HOM05D001723 ORTHO05D001706 5.7e-09 63.9 39 74.4
FAN22G0095 Fragaria x ananassa HOM05D001723 ORTHO05D001706 5.7e-09 63.9 45 66.7
Glyma.11G005100 Glycine max HOM05D001723 ORTHO05D001706 5.7e-09 63.9 44 65.9
HanXRQChr16g0513011 Helianthus annuus HOM05D001723 ORTHO05D001706 5.7e-09 63.9 55 56.4
HPP92_015927 Vanilla planifolia HOM05D001723 ORTHO05D001706 5.7e-09 63.9 37 75.7
Eucgr.B01087 Eucalyptus grandis HOM05D001723 ORTHO05D001706 9.7e-09 63.2 42 69.0
Ca_24395_v3 Cicer arietinum L. HOM05D001723 ORTHO05D001706 1.3e-08 62.8 44 65.9
DCAR_024601 Daucus carota HOM05D001723 ORTHO05D001706 1.3e-08 62.8 40 70.0
FAN07G2576 Fragaria x ananassa HOM05D001723 ORTHO05D001706 1.3e-08 62.8 38 76.3
MBI04_g20816_MAGBIO Magnolia biondii HOM05D001723 ORTHO05D001706 1.7e-08 62.4 50 60.0
Medtr5g006300 Medicago truncatula HOM05D001723 ORTHO05D001706 1.7e-08 62.4 59 50.8
Gohir.A09G055900 Gossypium hirsutum HOM05D001723 ORTHO05D001706 2.2e-08 62.0 69 55.1
Lalb_Chr21g0304661 Lupinus albus HOM05D001723 ORTHO05D001706 2.2e-08 62.0 44 65.9
TAR362G0934 Trochodendron aralioides HOM05D001723 ORTHO05D001706 2.2e-08 62.0 44 68.2
Gorai.N008700 Gossypium raimondii HOM05D001723 ORTHO05D001706 2.8e-08 61.6 54 59.3
Solyc06g054240.3 Solanum lycopersicum HOM05D001723 ORTHO05D001706 2.8e-08 61.6 42 66.7
Gohir.D09G055100 Gossypium hirsutum HOM05D001723 ORTHO05D001706 3.7e-08 61.2 69 55.1
Nitab4.5_0012971g0010 Nicotiana tabacum HOM05D001723 ORTHO05D001706 3.7e-08 61.2 43 67.4
Psat4g210600 Pisum sativum HOM05D001723 ORTHO05D001706 3.7e-08 61.2 48 58.3
Sopen06g019360 Solanum pennellii HOM05D001723 ORTHO05D001706 3.7e-08 61.2 42 66.7
FAN17G0924 Fragaria x ananassa HOM05D001723 ORTHO05D001706 4.8e-08 60.8 45 64.4
Medtr1g104500 Medicago truncatula HOM05D001723 ORTHO05D001706 4.8e-08 60.8 40 65.0
LjContig00408g0025118 Lotus japonicus HOM05D001723 ORTHO05D001706 6.3e-08 60.5 44 59.1
Thecc.04G230900 Theobroma cacao HOM05D001723 ORTHO05D001706 8.2e-08 60.1 51 56.9
Zm00001eb302930 Zea mays HOM05D001723 ORTHO05D001706 1.8e-07 58.9 38 71.1
arahy.Tifrunner.gnm1.ann1.CNDQ24 Arachis hypogaea HOM05D001723 ORTHO05D001706 2.4e-07 58.5 44 59.1
Medtr5g006290 Medicago truncatula HOM05D001723 ORTHO05D001706 4.1e-07 57.8 46 58.7
Phvul.002G045800 Phaseolus vulgaris HOM05D001723 ORTHO05D001706 5.3e-07 57.4 44 59.1
Os07g0204500 Oryza sativa ssp. japonica HOM05D001723 ORTHO05D001706 1.5e-06 55.8 35 74.3
Oeu026766.1 Olea europaea HOM05D001723 ORTHO05D001706 2.0e-06 55.5 52 53.8
A07p38950 Brassica napus HOM05D001723 ORTHO05D001706 2.6e-06 55.1 49 53.1
BraA07t31449Z Brassica rapa HOM05D001723 ORTHO05D001706 2.6e-06 55.1 49 53.1
Mapoly0086s0025 Marchantia polymorpha HOM05D001723 ORTHO05D001706 2.6e-06 55.1 43 60.5
SEGI_07359 Sequoiadendron giganteum HOM05D001723 ORTHO05D001706 2.6e-06 55.1 40 60.0
VMungo1215G1889 Vigna mungo HOM05D001723 ORTHO05D001706 2.6e-06 55.1 37 64.9
BcaC06g34700 Brassica carinata HOM05D001386 ORTHO05D019544 3.4e-06 54.7 56 50.0
CANSAT56G2715 Cannabis sativa HOM05D001723 ORTHO05D001706 4.5e-06 54.3 66 50.0
ATR0789G111 Amborella trichopoda HOM05D001723 ORTHO05D001706 5.9e-06 53.9 63 47.6
Ca_10909_v3 Cicer arietinum L. HOM05D001723 ORTHO05D001706 5.9e-06 53.9 35 65.7
Manes.03G179300 Manihot esculenta HOM05D001723 ORTHO05D001706 7.7e-06 53.5 35 74.3


User provided reference genes

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