Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C601G2 Lonicera japonica HOM05D000038 ORTHO05D235521 5.3e-46 187.2 86 100.0
Lj6C601T2 Lonicera japonica HOM05D000038 ORTHO05D000143 1.9e-19 99.0 59 79.7
TAR362G0060 Trochodendron aralioides HOM05D000038 ORTHO05D000143 4.5e-13 77.8 58 65.5
QL06p002733 Quercus lobata HOM05D000038 ORTHO05D000143 6.6e-12 73.9 66 56.1
QL06p002818 Quercus lobata HOM05D000038 ORTHO05D000143 6.6e-12 73.9 66 56.1
Thecc.04G230000 Theobroma cacao HOM05D000038 ORTHO05D000143 8.6e-12 73.6 58 60.3
Sopen09g030720 Solanum pennellii HOM05D000038 ORTHO05D000143 1.1e-11 73.2 62 59.7
QL06p002830 Quercus lobata HOM05D000038 ORTHO05D000143 1.9e-11 72.4 63 57.1
Atru.ctg752_3.95 Acer truncatum HOM05D000038 ORTHO05D000143 2.5e-11 72.0 59 55.9
Hma1.2p1_0745F.1_g211960 Hydrangea macrophylla HOM05D000038 ORTHO05D000143 2.5e-11 72.0 61 60.7
Lj6P601T14 Lonicera japonica HOM05D000038 ORTHO05D000143 2.5e-11 72.0 66 56.1
Manes.03G180000 Manihot esculenta HOM05D000038 ORTHO05D000143 5.5e-11 70.9 59 61.0
COL.COLO4_05312 Corchorus olitorius HOM05D000637 ORTHO05D001881 1.2e-10 69.7 62 54.8
Lj6P602T40 Lonicera japonica HOM05D000038 ORTHO05D000143 1.2e-10 69.7 66 54.5
Lalb_Chr06g0160641 Lupinus albus HOM05D000038 ORTHO05D000143 1.2e-10 69.7 58 53.4
Nitab4.5_0000043g0290 Nicotiana tabacum HOM05D000038 ORTHO05D000143 1.2e-10 69.7 59 55.9
Atru.ctg752_3.102 Acer truncatum HOM05D000038 ORTHO05D000143 2.1e-10 68.9 59 52.5
Ciclev10006907m.g Citrus clementina HOM05D000038 ORTHO05D000143 2.1e-10 68.9 57 57.9
Potri.013G059900 Populus trichocarpa HOM05D000038 ORTHO05D000143 3.6e-10 68.2 66 51.5
Solyc09g075920.1 Solanum lycopersicum HOM05D000038 ORTHO05D000143 3.6e-10 68.2 67 50.7
Sopen09g030750 Solanum pennellii HOM05D000038 ORTHO05D000143 3.6e-10 68.2 67 50.7
Solyc09g075910.1 Solanum lycopersicum HOM05D000038 ORTHO05D000143 6.1e-10 67.4 62 56.5
Nn4g26298 Nelumbo nucifera HOM05D000038 ORTHO05D000143 1.0e-09 66.6 69 47.8
PGSC0003DMG400031860 Solanum tuberosum HOM05D000038 ORTHO05D000143 1.0e-09 66.6 62 54.8
TAR636G0327 Trochodendron aralioides HOM05D000038 ORTHO05D000143 1.4e-09 66.2 59 57.6
Sabra13G0053100 Salix brachista HOM05D000038 ORTHO05D000143 1.8e-09 65.9 66 50.0
Atru.chr4.2481 Acer truncatum HOM05D000038 ORTHO05D000143 2.3e-09 65.5 58 55.2
CAN.G907.10 Capsicum annuum HOM05D000038 ORTHO05D000143 2.3e-09 65.5 58 56.9
Ciclev10007028m.g Citrus clementina HOM05D000038 ORTHO05D000143 4.0e-09 64.7 59 52.5
QL06p002729 Quercus lobata HOM05D000038 ORTHO05D000143 8.9e-09 63.5 70 47.1
QL06p002815 Quercus lobata HOM05D000038 ORTHO05D000143 8.9e-09 63.5 70 47.1
CAN.G907.9 Capsicum annuum HOM05D000038 ORTHO05D000143 1.2e-08 63.2 66 48.5
QL06p002834 Quercus lobata HOM05D000038 ORTHO05D000143 1.2e-08 63.2 66 48.5
QL06p002898 Quercus lobata HOM05D000038 ORTHO05D000143 1.2e-08 63.2 55 56.4
Atru.chr4.2484 Acer truncatum HOM05D000038 ORTHO05D000143 1.5e-08 62.8 58 53.4
Manes.03G179900 Manihot esculenta HOM05D000038 ORTHO05D000143 1.5e-08 62.8 56 58.9
TPR.G5505 Trifolium pratense HOM05D000038 ORTHO05D000143 1.5e-08 62.8 58 51.7
Atru.ctg752_3.99 Acer truncatum HOM05D000038 ORTHO05D000143 2.0e-08 62.4 58 48.3
Medtr1g104555 Medicago truncatula HOM05D000038 ORTHO05D000143 2.0e-08 62.4 58 51.7
Sopen09g030710 Solanum pennellii HOM05D000038 ORTHO05D000143 2.0e-08 62.4 59 55.9
PGSC0003DMG400031861 Solanum tuberosum HOM05D000038 ORTHO05D000143 2.0e-08 62.4 66 48.5
Potri.013G060000 Populus trichocarpa HOM05D000038 ORTHO05D000143 9.8e-08 60.1 59 50.8
Nn4g26297 Nelumbo nucifera HOM05D000038 ORTHO05D000143 1.7e-07 59.3 69 47.8
Phvul.002G046100 Phaseolus vulgaris HOM05D000038 ORTHO05D000143 2.2e-07 58.9 59 50.8
VMungo1215G3188 Vigna mungo HOM05D000038 ORTHO05D000143 2.2e-07 58.9 59 49.2
VMungo1215G0867 Vigna mungo HOM05D000038 ORTHO05D000143 2.8e-07 58.5 59 50.8
GSVIVG01017953001 Vitis vinifera HOM05D000038 ORTHO05D000143 2.8e-07 58.5 58 51.7
TAR375G1086 Trochodendron aralioides HOM05D000038 ORTHO05D000143 3.7e-07 58.2 59 50.8
VMungo0647G1443 Vigna mungo HOM05D000038 ORTHO05D000143 4.9e-07 57.8 59 50.8
Haze_00912 Corylus avellana HOM05D000038 ORTHO05D000143 6.3e-07 57.4 56 50.0
MBI04_g36447_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 1.4e-06 56.2 60 48.3
VMungo1215G2643 Vigna mungo HOM05D000038 ORTHO05D000143 1.8e-06 55.8 68 44.1
MBI04_g20823_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 3.1e-06 55.1 58 46.6
MBI04_g36446_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 3.1e-06 55.1 58 46.6
Manes.03G180100 Manihot esculenta HOM05D000038 ORTHO05D000143 3.1e-06 55.1 58 44.8
MBI01_g20389_MAGBIO Magnolia biondii HOM05D000038 ORTHO05D000143 4.1e-06 54.7 67 43.3


User provided reference genes

Program Settings