Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C599T3 Lonicera japonica HOM05D002407 ORTHO05D002476 1.8e-60 235.7 121 100.0
Lj6C594G25 Lonicera japonica HOM05D002407 ORTHO05D002476 1.9e-25 119.4 73 83.6
Lj6C599T5 Lonicera japonica HOM05D000041 ORTHO05D000452 1.5e-17 93.2 116 55.2
Dinv44512 Davidia involucrata HOM05D002407 ORTHO05D002476 1.9e-17 92.8 123 57.7
CiPaw.01G164400 Carya illinoinensis HOM05D002407 ORTHO05D002476 7.3e-17 90.9 140 52.9
Duzib212G0865 Durio zibethinus HOM05D002407 ORTHO05D002476 9.5e-17 90.5 145 47.6
Lj5g0016334 Lotus japonicus HOM05D002407 ORTHO05D002476 9.5e-17 90.5 122 52.5
Hund12142 Selenicereus undatus HOM05D002407 ORTHO05D002476 2.8e-16 89.0 149 46.3
MSTRG.21848 Avicennia marina HOM05D002407 ORTHO05D002476 6.2e-16 87.8 143 44.1
Thecc.04G228600 Theobroma cacao HOM05D002407 ORTHO05D002476 8.1e-16 87.4 148 47.3
SalBow2G0563 Salvia bowleyana HOM05D002407 ORTHO05D002476 1.8e-15 86.3 141 42.6
Gohir.A10G117100 Gossypium hirsutum HOM05D002407 ORTHO05D002476 3.1e-15 85.5 140 50.0
arahy.Tifrunner.gnm1.ann1.C339P9 Arachis hypogaea HOM05D002407 ORTHO05D002476 1.5e-14 83.2 129 44.2
CSS0005054 Camellia sinensis var. sinensis HOM05D002407 ORTHO05D002476 2.0e-14 82.8 135 45.9
arahy.Tifrunner.gnm1.ann1.GGU5D9 Arachis hypogaea HOM05D002407 ORTHO05D002476 3.4e-14 82.0 129 43.4
MSTRG.4019 Avicennia marina HOM05D002407 ORTHO05D002476 3.4e-14 82.0 140 43.6
SGA_v2.0_scaffold39G15271 Striga asiatica HOM05D002407 ORTHO05D002476 4.4e-14 81.6 126 44.4
FAN17G1063 Fragaria x ananassa HOM05D002407 ORTHO05D002476 7.5e-14 80.9 150 44.7
RcHm_v2.0_Chr4g0416621 Rosa chinensis HOM05D002407 ORTHO05D002476 7.5e-14 80.9 150 44.0
Gorai.006G237700 Gossypium raimondii HOM05D002407 ORTHO05D002476 1.3e-13 80.1 142 47.9
Potri.008G151200 Populus trichocarpa HOM05D002407 ORTHO05D002476 1.3e-13 80.1 144 43.8
Gohir.D09G217200 Gossypium hirsutum HOM05D002407 ORTHO05D002476 1.7e-13 79.7 143 47.6
Gohir.A09G214700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 2.2e-13 79.3 143 47.6
Cc03_g03560 Coffea canephora HOM05D002407 ORTHO05D002476 1.9e-12 76.3 146 41.1
AL3G36660 Arabidopsis lyrata HOM05D002407 ORTHO05D002476 2.4e-12 75.9 123 43.9
AT3G22380 Arabidopsis thaliana HOM05D002407 ORTHO05D002476 3.2e-12 75.5 118 44.9
Manes.15G026500 Manihot esculenta HOM05D002407 ORTHO05D002476 3.2e-12 75.5 134 46.3
Sabra08G0115000 Salix brachista HOM05D002407 ORTHO05D002476 3.2e-12 75.5 141 42.6
AUR62038105 Chenopodium quinoa HOM05D002407 ORTHO05D002476 4.1e-12 75.1 124 45.2
TPR.G5532 Trifolium pratense HOM05D002407 ORTHO05D002476 7.1e-12 74.3 118 44.9
CARHR098270 Cardamine hirsuta HOM05D002407 ORTHO05D002476 1.6e-11 73.2 131 43.5
Dinv38434 Davidia involucrata HOM05D002407 ORTHO05D002476 2.1e-11 72.8 146 40.4
FAN22G1385 Fragaria x ananassa HOM05D002407 ORTHO05D002476 2.1e-11 72.8 147 43.5
Manes.15G027400 Manihot esculenta HOM05D002407 ORTHO05D002476 2.1e-11 72.8 137 44.5
Psat6g208200 Pisum sativum HOM05D002407 ORTHO05D002476 2.1e-11 72.8 120 45.8
Sabra10G0053600 Salix brachista HOM05D002407 ORTHO05D002476 2.1e-11 72.8 136 41.9
Migut.G00324 Erythranthe guttata HOM05D002407 ORTHO05D002476 2.7e-11 72.4 125 40.8
AUR62038630 Chenopodium quinoa HOM05D002407 ORTHO05D002476 4.6e-11 71.6 128 43.8
COL.COLO4_10231 Corchorus olitorius HOM05D002407 ORTHO05D002476 7.8e-11 70.9 143 42.7
Ciclev10004136m.g Citrus clementina HOM05D002407 ORTHO05D002476 1.3e-10 70.1 83 57.8
Lalb_Chr09g0319791 Lupinus albus HOM05D002407 ORTHO05D002476 1.7e-10 69.7 128 39.1
THA.LOC104808535 Tarenaya hassleriana HOM05D002407 ORTHO05D002476 1.7e-10 69.7 152 39.5
Phvul.007G055400 Phaseolus vulgaris HOM05D002407 ORTHO05D002476 6.6e-10 67.8 121 45.5
Sc13g0004300 Simmondsia chinensis HOM05D002407 ORTHO05D002476 8.6e-10 67.4 143 40.6
Migut.N00175 Erythranthe guttata HOM05D002407 ORTHO05D002476 1.1e-09 67.0 128 39.1
SGA_v2.0_scaffold257G45729 Striga asiatica HOM05D002407 ORTHO05D002476 1.5e-09 66.6 134 41.0
Ah.13g073860 Amaranthus hybridus HOM05D002407 ORTHO05D002476 1.9e-09 66.2 150 34.7
Duzib052G1002 Durio zibethinus HOM05D002407 ORTHO05D002476 2.5e-09 65.9 141 42.6
Thhalv10019888m.g Eutrema salsugineum HOM05D002407 ORTHO05D002476 2.5e-09 65.9 124 37.9
unitig_748.g8339 Utricularia gibba HOM05D002407 ORTHO05D002476 2.5e-09 65.9 130 38.5
MSTRG.24745 Avicennia marina HOM05D002407 ORTHO05D002476 3.3e-09 65.5 139 39.6
BcaC09g49170 Brassica carinata HOM05D002407 ORTHO05D002476 5.6e-09 64.7 126 36.5
QL06p003139 Quercus lobata HOM05D002407 ORTHO05D002476 5.6e-09 64.7 102 47.1
FAN12G3852 Fragaria x ananassa HOM05D002407 ORTHO05D002476 7.3e-09 64.3 147 38.8
Glyma.10G249300 Glycine max HOM05D002407 ORTHO05D002476 7.3e-09 64.3 125 44.0
Gohir.D10G151700 Gossypium hirsutum HOM05D002407 ORTHO05D002476 7.3e-09 64.3 138 39.1
Rhsim02G0022900 Rhododendron simsii HOM05D002407 ORTHO05D002476 9.5e-09 63.9 132 42.4
Ah.13g073870 Amaranthus hybridus HOM05D002407 ORTHO05D002476 2.1e-08 62.8 150 36.7
Cpa.g.sc58.130 Carica papaya HOM05D002407 ORTHO05D002476 2.1e-08 62.8 145 35.9
FvH4_4g15230 Fragaria vesca HOM05D002407 ORTHO05D002476 2.8e-08 62.4 147 38.1
Haze_00920 Corylus avellana HOM05D002407 ORTHO05D002476 6.2e-08 61.2 145 40.7
Gorai.011G169000 Gossypium raimondii HOM05D002407 ORTHO05D002476 6.2e-08 61.2 136 39.0
VMungo0720G1158 Vigna mungo HOM05D002407 ORTHO05D002476 6.2e-08 61.2 121 42.1
BolC1t04147H Brassica oleracea HOM05D002407 ORTHO05D002476 8.1e-08 60.8 124 35.5
Nn1g02265 Nelumbo nucifera HOM05D002407 ORTHO05D002476 1.8e-07 59.7 141 38.3
vmacro15329 Vaccinium macrocarpon HOM05D002407 ORTHO05D002476 4.0e-07 58.5 133 37.6
Actinidia08503 Actinidia chinensis HOM05D002407 ORTHO05D002476 8.9e-07 57.4 147 34.7
TAR362G1005 Trochodendron aralioides HOM05D002407 ORTHO05D002476 8.9e-07 57.4 69 53.6
DCAR_027192 Daucus carota HOM05D002407 ORTHO05D002476 1.2e-06 57.0 156 35.9
Oeu041218.1 Olea europaea HOM05D002407 ORTHO05D002476 1.2e-06 57.0 108 41.7
Sed0021914 Sechium edule HOM05D002407 ORTHO05D002476 1.5e-06 56.6 145 42.8
SHI00424 Sapria himalayana HOM05D002407 ORTHO05D002476 2.6e-06 55.8 148 37.2


User provided reference genes

Program Settings