Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C571T2 Lonicera japonica HOM05D004207 ORTHO05D005188 2.0e-118 429.1 214 100.0
Lj6A558G55 Lonicera japonica HOM05D004207 ORTHO05D005188 8.4e-117 423.7 213 98.1
Lj2C402T2 Lonicera japonica HOM05D004207 ORTHO05D005188 2.5e-105 385.6 216 88.9
Lj2A402G44 Lonicera japonica HOM05D004207 ORTHO05D005188 8.1e-104 380.6 216 88.0
TAR072G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 1.0e-82 310.5 213 72.8
Nn7g36827 Nelumbo nucifera HOM05D004207 ORTHO05D005188 1.4e-82 310.1 214 70.6
Nitab4.5_0004588g0010 Nicotiana tabacum HOM05D004207 ORTHO05D005188 3.9e-82 308.5 215 71.6
Oeu057783.1 Olea europaea HOM05D004207 ORTHO05D005188 5.1e-82 308.1 213 74.2
Nitab4.5_0000812g0050 Nicotiana tabacum HOM05D004207 ORTHO05D005188 1.5e-81 306.6 215 70.2
Dinv29109 Davidia involucrata HOM05D004207 ORTHO05D005188 3.7e-80 302.0 218 69.7
QL07p011416 Quercus lobata HOM05D004207 ORTHO05D005188 3.7e-80 302.0 220 68.6
Sopen10g029060 Solanum pennellii HOM05D004207 ORTHO05D005188 1.4e-79 300.1 215 70.7
Solyc10g078400.2 Solanum lycopersicum HOM05D004207 ORTHO05D005188 4.1e-79 298.5 215 69.8
CSS0037507 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.4e-78 295.4 213 69.0
CSS0037639 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.4e-78 295.4 213 69.0
Potri.006G040400 Populus trichocarpa HOM05D004207 ORTHO05D005188 3.4e-78 295.4 214 69.6
Sabra06G0027300 Salix brachista HOM05D004207 ORTHO05D005188 3.4e-78 295.4 216 69.4
DCAR_020580 Daucus carota HOM05D004207 ORTHO05D005188 1.0e-77 293.9 215 69.3
MBI13_g09213_MAGBIO Magnolia biondii HOM05D004207 ORTHO05D005188 1.0e-77 293.9 213 69.0
Aqoxy1G00399 Aquilegia oxysepala HOM05D004207 ORTHO05D005188 1.3e-77 293.5 216 69.4
Potri.016G035600 Populus trichocarpa HOM05D004207 ORTHO05D005188 1.3e-77 293.5 215 70.7
CSS0026158 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.9e-76 289.7 216 66.7
CSS0030520 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.9e-76 289.7 216 66.7
TWI77G0534 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 1.9e-76 289.7 216 66.2
CiPaw.10G041000 Carya illinoinensis HOM05D004207 ORTHO05D005188 2.5e-76 289.3 221 68.3
PGSC0003DMG400008376 Solanum tuberosum HOM05D004207 ORTHO05D005188 2.5e-76 289.3 218 67.0
MD12G1095500 Malus domestica HOM05D004207 ORTHO05D005188 3.2e-76 288.9 217 65.9
VMungo0720G0799 Vigna mungo HOM05D004207 ORTHO05D005188 3.2e-76 288.9 214 67.8
GSVIVG01025744001 Vitis vinifera HOM05D004207 ORTHO05D005188 3.2e-76 288.9 214 68.2
HanXRQChr14g0437711 Helianthus annuus HOM05D004207 ORTHO05D005188 5.5e-76 288.1 215 69.3
Duzib093G1083 Durio zibethinus HOM05D004207 ORTHO05D005188 3.6e-75 285.4 214 67.8
Actinidia37879 Actinidia chinensis HOM05D004207 ORTHO05D005188 4.7e-75 285.0 218 66.5
MELO3C019096.2 Cucumis melo HOM05D004207 ORTHO05D005188 4.7e-75 285.0 224 64.7
Dinv21465 Davidia involucrata HOM05D004207 ORTHO05D005188 1.0e-74 283.9 217 67.3
Oeu021494.1 Olea europaea HOM05D004207 ORTHO05D005188 1.0e-74 283.9 211 69.7
PSO384G4208 Papaver somniferum HOM05D004207 ORTHO05D005188 1.8e-74 283.1 217 67.7
Actinidia17959 Actinidia chinensis HOM05D004207 ORTHO05D005188 3.0e-74 282.3 218 66.1
CANSAT64G1578 Cannabis sativa HOM05D004207 ORTHO05D005188 3.0e-74 282.3 216 66.2
COL.COLO4_07075 Corchorus olitorius HOM05D004207 ORTHO05D005188 3.9e-74 282.0 214 65.0
Glyma.02G162900 Glycine max HOM05D004207 ORTHO05D005188 5.1e-74 281.6 214 66.4
Gohir.A02G105901 Gossypium hirsutum HOM05D004207 ORTHO05D005188 8.8e-74 280.8 215 66.5
Hma1.2p1_0007F.1_g005270 Hydrangea macrophylla HOM05D004207 ORTHO05D005188 1.1e-73 280.4 218 67.4
Prupe.1G554500 Prunus persica HOM05D004207 ORTHO05D005188 1.1e-73 280.4 218 66.1
PSO339G0215 Papaver somniferum HOM05D004207 ORTHO05D005188 1.5e-73 280.0 217 66.8
CAN.G960.63 Capsicum annuum HOM05D004207 ORTHO05D005188 2.0e-73 279.6 215 66.5
MSTRG.19794 Avicennia marina HOM05D004207 ORTHO05D005188 3.3e-73 278.9 217 66.8
Lsat_1_v5_gn_2_54201 Lactuca sativa HOM05D004207 ORTHO05D005188 3.3e-73 278.9 221 65.2
Manes.08G060400 Manihot esculenta HOM05D004207 ORTHO05D005188 3.3e-73 278.9 211 66.8
Sabra16G0037900 Salix brachista HOM05D004207 ORTHO05D005188 3.3e-73 278.9 213 67.1
Cfa019993 Carpinus fangiana HOM05D004207 ORTHO05D000579 4.4e-73 278.5 189 75.1
Cc06_g19790 Coffea canephora HOM05D004207 ORTHO05D005188 5.7e-73 278.1 218 65.1
Gohir.D03G072800 Gossypium hirsutum HOM05D004207 ORTHO05D005188 7.4e-73 277.7 215 66.0
Gorai.003G087000 Gossypium raimondii HOM05D004207 ORTHO05D005188 7.4e-73 277.7 215 66.0
Phvul.007G243300 Phaseolus vulgaris HOM05D004207 ORTHO05D005188 1.7e-72 276.6 214 65.0
Medtr8g106395 Medicago truncatula HOM05D004207 ORTHO05D005188 2.2e-72 276.2 214 64.5
AUR62030295 Chenopodium quinoa HOM05D004207 ORTHO05D005188 2.8e-72 275.8 216 64.4
Ciclev10011666m.g Citrus clementina HOM05D004207 ORTHO05D005188 2.8e-72 275.8 214 65.0
Migut.J01642 Erythranthe guttata HOM05D004207 ORTHO05D005188 3.7e-72 275.4 217 68.2
Eucgr.K01646 Eucalyptus grandis HOM05D004207 ORTHO05D005188 6.3e-72 274.6 219 64.8
SGA_v2.0_scaffold69G23162 Striga asiatica HOM05D004207 ORTHO05D005188 8.2e-72 274.2 204 68.1
Hund24581 Selenicereus undatus HOM05D004207 ORTHO05D005188 1.1e-71 273.9 217 64.5
AUR62018367 Chenopodium quinoa HOM05D004207 ORTHO05D005188 1.8e-71 273.1 216 63.9
Ca_25841_v3 Cicer arietinum L. HOM05D004207 ORTHO05D005188 2.4e-71 272.7 214 64.0
vmacro07779 Vaccinium macrocarpon HOM05D004207 ORTHO05D005188 2.4e-71 272.7 218 64.2
Atru.chr1.1398 Acer truncatum HOM05D004207 ORTHO05D005188 5.3e-71 271.6 215 64.7
Psat7g005160 Pisum sativum HOM05D004207 ORTHO05D005188 9.1e-71 270.8 214 64.0
SalBow6G6231 Salvia bowleyana HOM05D004207 ORTHO05D005188 1.6e-70 270.0 215 65.1
Thecc.05G127200 Theobroma cacao HOM05D004207 ORTHO05D005188 1.6e-70 270.0 214 64.5
Cpa.g.sc92.81 Carica papaya HOM05D004207 ORTHO05D005188 2.0e-70 269.6 220 60.9
RcHm_v2.0_Chr1g0339511 Rosa chinensis HOM05D004207 ORTHO05D005188 7.7e-70 267.7 213 65.3
EL10Ac3g07257 Beta vulgaris HOM05D004207 ORTHO05D005188 1.0e-69 267.3 210 62.4
Prupe.2G101700 Prunus persica HOM05D004207 ORTHO05D005188 3.8e-69 265.4 215 62.3
TAR633G0823 Trochodendron aralioides HOM05D004207 ORTHO05D005188 6.5e-69 264.6 155 81.9
Rhsim03G0036600 Rhododendron simsii HOM05D004207 ORTHO05D005188 1.1e-68 263.8 218 63.8
TPR.G5525 Trifolium pratense HOM05D004207 ORTHO05D005188 7.2e-68 261.2 237 59.9
Lalb_Chr14g0365741 Lupinus albus HOM05D004207 ORTHO05D005188 9.4e-68 260.8 215 63.3
FAN15G2977 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.6e-67 260.0 211 64.0
THA.LOC104824395 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 2.1e-67 259.6 215 57.7
Glyma.09G026700 Glycine max HOM05D004207 ORTHO05D005188 2.7e-67 259.2 214 65.9
ClCG04G005620 Citrullus lanatus HOM05D004207 ORTHO05D005188 4.7e-67 258.5 192 67.2
arahy.Tifrunner.gnm1.ann1.I2Z9WV Arachis hypogaea HOM05D004207 ORTHO05D005188 6.1e-67 258.1 217 59.9
unitig_744.g24179 Utricularia gibba HOM05D004207 ORTHO05D005188 1.4e-66 256.9 199 62.3
FvH4_2g10400 Fragaria vesca HOM05D004207 ORTHO05D005188 1.8e-66 256.5 209 63.6
FAN24G1611 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.8e-66 256.5 209 63.6
FAN20G2214 Fragaria x ananassa HOM05D004207 ORTHO05D005188 3.0e-66 255.8 209 64.6
arahy.Tifrunner.gnm1.ann1.U0ATL0 Arachis hypogaea HOM05D004207 ORTHO05D005188 6.7e-66 254.6 217 60.4
PGR142G0266 Punica granatum HOM05D004207 ORTHO05D005188 1.1e-65 253.8 219 59.4
Sed0024335 Sechium edule HOM05D004207 ORTHO05D005188 9.7e-65 250.8 229 56.3
FAN18G2175 Fragaria x ananassa HOM05D004207 ORTHO05D005188 2.2e-64 249.6 210 63.3
CsaV3_4G029510 Cucumis sativus L. HOM05D004207 ORTHO05D005188 4.8e-64 248.4 192 66.1
ATR0307G046 Amborella trichopoda HOM05D004207 ORTHO05D005188 8.2e-64 247.7 148 78.4
Carub.0005s2349 Capsella rubella HOM05D004207 ORTHO05D005188 8.2e-64 247.7 215 59.5
FvH4_5g30880 Fragaria vesca HOM05D004207 ORTHO05D005188 1.4e-63 246.9 210 62.9
AL5G38110 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 1.8e-63 246.5 213 59.2
AT3G56750 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 1.8e-63 246.5 213 59.6
THA.LOC104803259 Tarenaya hassleriana HOM05D004207 ORTHO05D005188 3.1e-63 245.7 215 57.2
CDE02G0307 Ceratophyllum demersum HOM05D004207 ORTHO05D005188 5.3e-63 245.0 166 68.1
arahy.Tifrunner.gnm1.ann1.1DJ9GZ Arachis hypogaea HOM05D004207 ORTHO05D005188 9.1e-63 244.2 217 58.1
arahy.Tifrunner.gnm1.ann1.6G7KL6 Arachis hypogaea HOM05D004207 ORTHO05D005188 1.6e-62 243.4 217 58.5
BcaC07g40120 Brassica carinata HOM05D004207 ORTHO05D005188 4.5e-62 241.9 210 60.5
Thhalv10016761m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 3.8e-61 238.8 214 56.1
Aa31LG10G11590 Aethionema arabicum HOM05D004207 ORTHO05D005188 6.5e-61 238.0 199 59.8
AL4G39120 Arabidopsis lyrata HOM05D004207 ORTHO05D005188 6.5e-61 238.0 210 57.6
BcaC08g44805 Brassica carinata HOM05D004207 ORTHO05D005188 6.5e-61 238.0 213 57.3
BolC6t37545H Brassica oleracea HOM05D004207 ORTHO05D005188 6.5e-61 238.0 213 57.3
BraA09t40412Z Brassica rapa HOM05D004207 ORTHO05D005188 6.5e-61 238.0 210 60.0
C08p31970 Brassica napus HOM05D004207 ORTHO05D005188 8.5e-61 237.7 210 59.5
BcaB02g07638 Brassica carinata HOM05D004207 ORTHO05D005188 1.5e-60 236.9 213 56.8
BcaC07g39983 Brassica carinata HOM05D004207 ORTHO05D005188 1.9e-60 236.5 210 59.0
BolC8t50815H Brassica oleracea HOM05D004207 ORTHO05D005188 1.9e-60 236.5 210 59.0
Sp5g05820 Schrenkiella parvula HOM05D004207 ORTHO05D005188 1.9e-60 236.5 213 58.2
C06p23760 Brassica napus HOM05D004207 ORTHO05D005188 3.2e-60 235.7 213 56.8
Lj5g0028239 Lotus japonicus HOM05D004207 ORTHO05D005188 5.5e-60 235.0 206 60.7
Thhalv10006019m.g Eutrema salsugineum HOM05D004207 ORTHO05D005188 9.4e-60 234.2 210 58.6
Ah.04g150870 Amaranthus hybridus HOM05D000591 ORTHO05D000579 1.6e-59 233.4 143 75.5
A07p23050 Brassica napus HOM05D004207 ORTHO05D005188 2.1e-59 233.0 213 56.8
BraA07t29968Z Brassica rapa HOM05D004207 ORTHO05D005188 2.1e-59 233.0 213 56.8
Carub.0004s2346 Capsella rubella HOM05D004207 ORTHO05D005188 2.7e-59 232.6 214 55.1
Sc13g0001060 Simmondsia chinensis HOM05D004207 ORTHO05D005188 3.6e-59 232.3 150 72.0
TAR071G0001 Trochodendron aralioides HOM05D004207 ORTHO05D005188 3.6e-59 232.3 165 70.3
AT2G41150 Arabidopsis thaliana HOM05D004207 ORTHO05D005188 4.7e-59 231.9 199 58.3
Ah.13g077190 Amaranthus hybridus HOM05D002757 ORTHO05D003252 8.0e-59 231.1 141 75.9
SHI31312 Sapria himalayana HOM05D004207 ORTHO05D005188 1.8e-58 229.9 224 54.5
Os03g0366700 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 2.6e-57 226.1 152 68.4
SEGI_12806 Sequoiadendron giganteum HOM05D004207 ORTHO05D005188 4.4e-57 225.3 236 51.7
A05p02060 Brassica napus HOM05D004207 ORTHO05D005188 1.3e-56 223.8 207 55.1
CARHR136240 Cardamine hirsuta HOM05D004207 ORTHO05D005188 1.1e-55 220.7 203 57.6
BraA05t19202Z Brassica rapa HOM05D004207 ORTHO05D005188 2.4e-55 219.5 207 54.6
Zm00001eb017860 Zea mays HOM05D004207 ORTHO05D005188 4.1e-55 218.8 172 61.0
Zm00001eb109900 Zea mays HOM05D004207 ORTHO05D005188 5.4e-55 218.4 154 65.6
C04p02450 Brassica napus HOM05D004207 ORTHO05D005188 2.9e-53 212.6 150 66.0
BcaB01g01392 Brassica carinata HOM05D005156 ORTHO05D006710 8.5e-53 211.1 179 60.9
BcaC02g12755 Brassica carinata HOM05D004207 ORTHO05D005188 2.5e-52 209.5 211 51.2
BolC4t21890H Brassica oleracea HOM05D004207 ORTHO05D005188 4.2e-52 208.8 210 52.9
ECA238G2339 Erigeron canadensis HOM05D004207 ORTHO05D000645 1.8e-50 203.4 129 78.3
BcaB06g27278 Brassica carinata HOM05D004207 ORTHO05D005188 4.9e-48 195.3 185 56.8
SGA_v2.0_scaffold66G22265 Striga asiatica HOM05D004207 ORTHO05D002907 4.1e-47 192.2 221 52.0
Haze_20240 Corylus avellana HOM05D004207 ORTHO05D005188 6.1e-43 178.3 105 81.9
QL06p027270 Quercus lobata HOM05D004207 ORTHO05D005188 2.3e-42 176.4 109 78.0
CiPaw.09G048900 Carya illinoinensis HOM05D004207 ORTHO05D005188 5.2e-42 175.3 111 73.0
TWI53G0562 Tripterygium wilfordii HOM05D004207 ORTHO05D005188 1.2e-41 174.1 142 59.9
Peaxi162Scf00003g04926 Petunia axillaris HOM05D004207 ORTHO05D005188 4.9e-40 168.7 213 47.4
CSS0011177 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.0e-37 161.0 105 71.4
CSS0022112 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.0e-37 161.0 105 71.4
CSS0017049 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 1.3e-37 160.6 105 71.4
CSS0007811 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 8.6e-37 157.9 105 69.5
MD14G1091500 Malus domestica HOM05D004207 ORTHO05D005188 1.5e-36 157.1 143 56.6
CSS0037189 Camellia sinensis var. sinensis HOM05D004207 ORTHO05D005188 3.3e-36 156.0 105 70.5
AagrBONN_evm.TU.Sc2ySwM_362.2903 Anthoceros agrestis HOM05D004207 ORTHO05D005188 2.8e-35 152.9 152 48.7
A09p49590 Brassica napus HOM05D004207 ORTHO05D005188 8.3e-32 141.4 136 55.1
CARHR159490 Cardamine hirsuta HOM05D004207 ORTHO05D005188 4.1e-31 139.0 101 66.3
SMO119G0213 Selaginella moellendorffii HOM05D004207 ORTHO05D005188 4.1e-31 139.0 154 46.8
Cc00_g24130 Coffea canephora HOM05D004207 ORTHO05D005188 3.5e-30 136.0 92 71.7
Pp3c2_30150 Physcomitrium patens HOM05D004207 ORTHO05D005188 6.0e-30 135.2 193 39.4
Os07g0641000 Oryza sativa ssp. japonica HOM05D004207 ORTHO05D005188 1.1e-28 131.0 111 55.9
Cc00_g13290 Coffea canephora HOM05D004207 ORTHO05D005188 2.1e-27 126.7 89 69.7
Nn2g14966 Nelumbo nucifera HOM05D004207 ORTHO05D005188 9.2e-23 111.3 114 53.5
FAN04G1206 Fragaria x ananassa HOM05D004207 ORTHO05D005188 1.0e-21 107.8 70 77.1
BcaC01g05358 Brassica carinata HOM05D004207 ORTHO05D005188 1.6e-14 84.0 66 59.1
Zm00001eb328890 Zea mays HOM05D004207 ORTHO05D005188 6.2e-11 72.0 36 88.9
Cc06_g19690 Coffea canephora HOM05D004207 ORTHO05D005188 2.4e-10 70.1 108 39.8
FAN27G3487 Fragaria x ananassa HOM05D004207 ORTHO05D005188 4.0e-10 69.3 135 36.3


User provided reference genes

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