Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 2.6e-28 127.9 58 100.0
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 1.7e-19 98.6 53 79.2
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.7e-19 98.6 55 76.4
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.2e-19 98.2 49 87.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 2.2e-19 98.2 53 79.2
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 2.9e-19 97.8 53 79.2
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.7e-19 97.4 53 77.4
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.7e-19 97.4 53 77.4
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.7e-19 97.4 53 77.4
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 3.7e-19 97.4 56 75.0
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 4.9e-19 97.1 53 75.5
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 6.4e-19 96.7 53 81.1
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 6.4e-19 96.7 53 79.2
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 8.3e-19 96.3 53 75.5
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 8.3e-19 96.3 53 79.2
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.1e-18 95.9 53 75.5
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 1.1e-18 95.9 54 77.8
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 1.4e-18 95.5 53 73.6
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 1.9e-18 95.1 53 79.2
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 1.9e-18 95.1 53 79.2
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.9e-18 95.1 54 75.9
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.9e-18 95.1 53 77.4
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.9e-18 95.1 53 79.2
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 2.4e-18 94.7 53 79.2
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.4e-18 94.7 53 79.2
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 2.4e-18 94.7 53 79.2
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 3.2e-18 94.4 53 79.2
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 3.2e-18 94.4 53 77.4
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 4.1e-18 94.0 53 77.4
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 4.1e-18 94.0 53 77.4
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 4.1e-18 94.0 53 77.4
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 5.4e-18 93.6 53 73.6
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 5.4e-18 93.6 51 76.5
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 5.4e-18 93.6 53 77.4
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 5.4e-18 93.6 53 73.6
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 7.0e-18 93.2 53 73.6
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 7.0e-18 93.2 53 73.6
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 7.0e-18 93.2 53 75.5
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 7.0e-18 93.2 53 75.5
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 7.0e-18 93.2 51 76.5
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 7.0e-18 93.2 51 78.4
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 7.0e-18 93.2 53 75.5
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 7.0e-18 93.2 53 75.5
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 9.2e-18 92.8 53 77.4
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 9.2e-18 92.8 53 73.6
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.2e-17 92.4 53 75.5
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 1.2e-17 92.4 53 73.6
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.6e-17 92.0 53 77.4
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 1.6e-17 92.0 53 71.7
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 1.6e-17 92.0 51 76.5
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 2.0e-17 91.7 53 77.4
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 2.0e-17 91.7 53 77.4
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.7e-17 91.3 51 72.5
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 2.7e-17 91.3 53 75.5
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 71.7
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 3.5e-17 90.9 51 74.5
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 3.5e-17 90.9 53 75.5
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 4.6e-17 90.5 56 67.9
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 4.6e-17 90.5 53 75.5
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 6.0e-17 90.1 49 75.5
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 6.0e-17 90.1 53 69.8
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 6.0e-17 90.1 51 76.5
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 6.0e-17 90.1 53 73.6
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 6.0e-17 90.1 53 73.6
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 7.8e-17 89.7 53 73.6
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 7.8e-17 89.7 53 73.6
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 7.8e-17 89.7 53 73.6
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 7.8e-17 89.7 53 73.6
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 7.8e-17 89.7 53 73.6
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 7.8e-17 89.7 53 73.6
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 7.8e-17 89.7 49 79.6
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 1.0e-16 89.4 53 73.6
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 1.0e-16 89.4 51 74.5
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.0e-16 89.4 52 73.1
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 1.0e-16 89.4 52 73.1
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 1.0e-16 89.4 52 73.1
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.0e-16 89.4 54 72.2
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 1.3e-16 89.0 53 75.5
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.3e-16 89.0 53 71.7
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.7e-16 88.6 53 71.7
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.7e-16 88.6 57 66.7
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.7e-16 88.6 53 71.7
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 1.7e-16 88.6 51 70.6
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 2.3e-16 88.2 53 71.7
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 2.3e-16 88.2 51 72.5
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 2.3e-16 88.2 53 75.5
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 3.0e-16 87.8 50 82.0
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.0e-16 87.8 53 69.8
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 3.9e-16 87.4 53 69.8
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 5.0e-16 87.0 53 69.8
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 5.0e-16 87.0 53 69.8
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 5.0e-16 87.0 53 73.6
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 6.6e-16 86.7 53 71.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 6.6e-16 86.7 54 68.5
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 8.6e-16 86.3 53 71.7
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 8.6e-16 86.3 53 71.7
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 8.6e-16 86.3 53 69.8
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 8.6e-16 86.3 51 70.6
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 8.6e-16 86.3 53 71.7
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-15 85.9 49 73.5
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-15 85.9 49 73.5
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 2.5e-15 84.7 53 67.9
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 7.3e-15 83.2 46 80.4
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 9.5e-15 82.8 51 70.6
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.2e-14 82.4 50 70.0
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 2.1e-14 81.6 51 64.7
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.4e-13 79.0 49 69.4
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.7e-11 72.0 37 75.7
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 6.4e-11 70.1 44 72.7
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 3.2e-10 67.8 51 58.8
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 2.5e-07 58.2 36 77.8
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 5.6e-07 57.0 39 64.1
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 7.3e-07 56.6 53 54.7
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.2e-06 55.8 50 54.0


User provided reference genes

Program Settings