Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 1.9e-245 852.0 422 100.0
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 3.8e-145 518.8 419 68.7
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 8.2e-132 474.6 425 62.6
Lj6A525G37 Lonicera japonica HOM05D002342 ORTHO05D002407 4.1e-107 392.5 270 77.8
Lj6A517T27 Lonicera japonica HOM05D002342 ORTHO05D002407 2.9e-105 386.3 292 72.6
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 1.9e-104 383.6 432 53.0
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 5.3e-99 365.5 435 50.1
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 4.5e-98 362.5 420 51.4
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.7e-97 360.5 428 51.2
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 8.5e-97 358.2 437 48.7
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 8.0e-95 351.7 424 48.6
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 4.1e-91 339.3 418 48.3
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.2e-90 337.8 447 47.0
Lj6C516G5 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-87 327.8 312 60.6
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 8.0e-87 325.1 457 45.3
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 1.0e-86 324.7 442 44.1
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 8.9e-86 321.6 404 49.0
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 1.3e-84 317.8 460 45.9
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.7e-84 317.4 435 44.1
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 2.2e-84 317.0 408 47.8
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 8.3e-84 315.1 439 44.4
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 1.4e-83 314.3 420 46.0
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 2.7e-82 310.1 476 41.8
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 1.3e-81 307.8 415 44.8
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 1.7e-81 307.4 433 42.5
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.0e-81 305.8 433 43.6
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.6e-81 305.4 433 43.4
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 8.6e-81 305.1 438 43.2
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 8.6e-81 305.1 433 43.4
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 1.1e-80 304.7 467 41.3
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 4.3e-80 302.8 459 42.9
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 7.3e-80 302.0 463 42.3
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 5.2e-78 295.8 450 43.6
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 6.8e-78 295.4 409 44.7
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 6.8e-78 295.4 424 43.4
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.2e-77 294.7 499 40.5
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 5.8e-77 292.4 479 41.8
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 2.2e-76 290.4 436 42.2
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 6.4e-76 288.9 405 45.2
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 6.4e-76 288.9 471 41.0
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 1.9e-75 287.3 444 41.7
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 2.4e-75 287.0 442 43.4
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 3.2e-75 286.6 402 44.3
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 7.0e-75 285.4 393 44.8
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 2.0e-74 283.9 414 41.3
Peaxi162Scf00047g00342 Petunia axillaris HOM05D002342 ORTHO05D002407 2.0e-74 283.9 406 44.1
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 2.0e-74 283.9 418 42.3
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 2.0e-74 283.9 404 44.6
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 3.5e-74 283.1 399 43.9
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 3.5e-74 283.1 489 40.7
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 4.6e-74 282.7 421 41.8
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 1.3e-73 281.2 453 40.4
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 1.3e-73 281.2 398 44.0
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 3.0e-73 280.0 446 44.4
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.5e-72 277.7 446 41.3
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 3.3e-72 276.6 419 43.2
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 9.5e-72 275.0 459 40.3
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 1.6e-71 274.2 370 45.9
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 1.6e-71 274.2 454 40.3
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 2.8e-71 273.5 467 39.6
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 6.2e-71 272.3 384 42.2
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 2.3e-70 270.4 470 38.3
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 2.3e-70 270.4 405 44.0
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 2.3e-70 270.4 384 41.9
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 5.2e-70 269.2 431 41.3
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.2e-69 268.1 520 37.1
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.5e-69 267.7 373 44.0
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 7.5e-69 265.4 400 41.2
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 9.8e-69 265.0 429 40.6
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 9.8e-69 265.0 525 37.3
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.3e-68 264.6 447 41.4
Lj6A516G44 Lonicera japonica HOM05D010180 ORTHO05D002407 1.7e-68 264.2 146 91.1
vmacro00455 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 2.2e-68 263.8 340 46.8
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 3.7e-68 263.1 295 51.2
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 4.9e-68 262.7 437 38.4
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 6.4e-68 262.3 444 40.5
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.4e-67 261.2 435 38.4
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 4.1e-67 259.6 313 51.8
Lj6C524T10 Lonicera japonica HOM05D002180 ORTHO05D001339 9.2e-67 258.5 197 70.1
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 1.2e-66 258.1 403 40.0
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 6.0e-66 255.8 522 36.8
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 1.0e-65 255.0 436 39.4
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 1.3e-65 254.6 487 37.8
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.3e-65 253.8 451 39.7
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 3.9e-65 253.1 481 38.9
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 6.6e-65 252.3 205 62.9
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 8.6e-65 251.9 428 39.0
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 5.6e-64 249.2 399 38.1
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 7.3e-64 248.8 441 39.5
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 1.2e-63 248.1 532 35.3
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 2.1e-63 247.3 426 39.2
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 2.8e-63 246.9 293 46.8
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 6.2e-63 245.7 393 41.7
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 6.2e-63 245.7 446 38.6
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 8.1e-63 245.4 177 67.2
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 1.4e-62 244.6 297 45.8
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.8e-62 244.2 374 41.7
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 7.5e-61 238.8 329 46.5
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 7.5e-61 238.8 399 38.6
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 6.4e-60 235.7 225 55.1
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 6.4e-60 235.7 451 35.9
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 2.1e-58 230.7 434 34.8
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 3.5e-58 229.9 192 60.4
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 6.0e-58 229.2 442 36.4
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 1.0e-57 228.4 114 98.2
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 1.3e-57 228.0 405 37.8
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.0e-57 226.9 371 39.1
EL10Ac3g07477 Beta vulgaris HOM05D002342 ORTHO05D002407 3.9e-57 226.5 426 34.7
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 5.1e-57 226.1 391 37.1
COL.COLO4_20180 Corchorus olitorius HOM05D002342 ORTHO05D002407 1.5e-56 224.6 435 34.9
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 2.5e-56 223.8 394 36.3
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 2.5e-56 223.8 207 58.0
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 1.6e-55 221.1 399 35.3
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 1.6e-55 221.1 390 37.2
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 2.1e-55 220.7 381 36.5
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 2.8e-55 220.3 383 38.1
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 4.7e-55 219.5 388 36.3
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 4.7e-55 219.5 388 36.3
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 4.7e-55 219.5 259 49.4
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 8.1e-55 218.8 390 37.2
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.4e-54 218.0 385 35.6
HPP92_020882 Vanilla planifolia HOM05D002342 ORTHO05D002407 2.4e-54 217.2 414 37.2
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 3.1e-54 216.9 401 35.2
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 6.8e-54 215.7 402 35.8
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 2.9e-52 210.3 414 36.0
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 4.9e-52 209.5 392 36.5
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 5.4e-51 206.1 408 35.8
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 1.2e-50 204.9 430 34.7
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 1.6e-50 204.5 399 35.1
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 2.1e-50 204.1 418 35.9
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 4.6e-50 203.0 375 37.1
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 7.8e-50 202.2 211 52.1
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 3.0e-49 200.3 399 35.3
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 3.0e-49 200.3 438 37.0
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 6.6e-49 199.1 436 35.6
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 8.7e-49 198.7 390 35.4
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 1.5e-48 198.0 195 51.3
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 8.1e-47 192.2 416 33.9
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 8.1e-47 192.2 395 36.7
Oeu054534.1 Olea europaea HOM05D002342 ORTHO05D002407 1.8e-46 191.0 231 48.5
Oeu054535.1 Olea europaea HOM05D002342 ORTHO05D002407 1.8e-46 191.0 231 48.5
FvH4_4g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 7.6e-45 185.7 314 41.4
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 7.6e-45 185.7 496 32.1
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 3.2e-43 180.3 217 47.9
ATR0829G161 Amborella trichopoda HOM05D002342 ORTHO05D002407 4.2e-43 179.9 448 30.6
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.6e-42 177.9 179 53.6
SEGI_11248 Sequoiadendron giganteum HOM05D002342 ORTHO05D002407 1.3e-41 174.9 248 38.3
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 3.9e-41 173.3 137 70.1
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 4.3e-40 169.9 292 36.6
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 7.3e-40 169.1 122 73.8
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 6.9e-38 162.5 277 39.0
Pp3c21_20720 Physcomitrium patens HOM05D002342 ORTHO05D002407 2.4e-35 154.1 315 33.7
Mapoly0105s0052 Marchantia polymorpha HOM05D002342 ORTHO05D002407 4.3e-32 143.3 353 32.9
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 4.5e-29 133.3 94 75.5
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 2.1e-26 124.4 194 38.7
Solyc09g092100.4 Solanum lycopersicum HOM05D002342 ORTHO05D002407 3.1e-22 110.5 267 31.8
CAN.G1333.8 Capsicum annuum HOM05D002342 ORTHO05D002407 3.4e-21 107.1 264 32.6
AagrBONN_evm.TU.Sc2ySwM_228.1730 Anthoceros agrestis HOM05D002342 ORTHO05D002407 2.9e-20 104.0 330 27.0
Hma1.2p1_0383F.1_g140550 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 4.2e-19 100.1 226 35.4
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 1.3e-17 95.1 123 48.0
Nitab4.5_0006215g0010 Nicotiana tabacum HOM05D002342 ORTHO05D002407 3.9e-17 93.6 228 32.0
Actinidia38750 Actinidia chinensis HOM05D002342 ORTHO05D002407 9.7e-16 89.0 283 30.7
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 9.7e-16 89.0 116 47.4
FAN22G1019 Fragaria x ananassa HOM05D002342 ORTHO05D002407 5.3e-14 83.2 256 32.4
Sed0007147 Sechium edule HOM05D002342 ORTHO05D002407 2.5e-11 74.3 233 28.3
CBR_g6414 Chara braunii HOM05D002342 ORTHO05D002407 7.9e-10 69.3 452 23.2
AagrBONN_evm.TU.Sc2ySwM_228.1743 Anthoceros agrestis HOM05D002342 ORTHO05D002407 6.3e-07 59.7 297 22.2
Prupe.1G358100 Prunus persica HOM05D002342 ORTHO05D002407 8.2e-07 59.3 164 29.3
FvH4_4g13640 Fragaria vesca HOM05D002342 ORTHO05D002407 3.1e-06 57.4 105 41.9


User provided reference genes

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