Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 7.6e-58 227.3 142 100.0
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 9.1e-43 177.2 137 70.1
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 2.0e-42 176.0 137 70.1
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-39 166.8 137 65.7
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 1.2e-31 140.2 137 59.1
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 9.8e-21 104.0 69 79.7
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 2.2e-20 102.8 155 56.8
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 8.6e-17 90.9 124 46.8
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 1.9e-16 89.7 64 71.9
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.2e-15 87.0 69 63.8
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 1.0e-14 84.0 61 72.1
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 1.0e-14 84.0 71 63.4
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 1.0e-14 84.0 65 63.1
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 6.8e-14 81.3 141 39.0
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 1.2e-13 80.5 54 75.9
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 2.0e-13 79.7 63 60.3
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.0e-13 79.7 63 60.3
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.4e-13 79.0 63 60.3
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 4.4e-13 78.6 60 66.7
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 4.4e-13 78.6 59 67.8
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 9.8e-13 77.4 64 60.9
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 9.8e-13 77.4 55 67.3
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 9.8e-13 77.4 61 65.6
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 9.8e-13 77.4 73 56.2
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 1.3e-12 77.0 61 65.6
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 1.3e-12 77.0 59 66.1
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 1.3e-12 77.0 60 65.0
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 1.3e-12 77.0 68 61.8
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.7e-12 76.6 64 57.8
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.2e-12 76.3 64 60.9
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 3.7e-12 75.5 63 63.5
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.7e-12 75.5 61 60.7
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 3.7e-12 75.5 147 42.2
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 4.9e-12 75.1 54 70.4
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 8.3e-12 74.3 63 58.7
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 1.1e-11 73.9 53 69.8
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.1e-11 73.9 58 63.8
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 1.1e-11 73.9 58 63.8
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 1.4e-11 73.6 56 66.1
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 1.4e-11 73.6 59 59.3
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 1.8e-11 73.2 57 63.2
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 3.1e-11 72.4 66 53.0
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 7.0e-11 71.2 57 63.2
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 7.0e-11 71.2 53 66.0
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 1.6e-10 70.1 66 59.1
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 2.0e-10 69.7 65 55.4
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 5.9e-10 68.2 59 54.2
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 5.9e-10 68.2 57 56.1
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 5.9e-10 68.2 53 62.3
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 1.0e-09 67.4 61 59.0
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 1.0e-09 67.4 66 57.6
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 1.0e-09 67.4 56 58.9
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 1.3e-09 67.0 66 51.5
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 1.7e-09 66.6 55 52.7
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.7e-09 66.6 56 58.9
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 1.7e-09 66.6 54 57.4
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 2.3e-09 66.2 50 68.0
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 2.9e-09 65.9 65 52.3
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 5.0e-09 65.1 51 66.7
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 6.6e-09 64.7 67 46.3
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 6.6e-09 64.7 55 60.0
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 6.6e-09 64.7 50 62.0
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 6.6e-09 64.7 56 55.4
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 6.6e-09 64.7 49 65.3
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 8.6e-09 64.3 55 54.5
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 8.6e-09 64.3 57 61.4
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 8.6e-09 64.3 67 53.7
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 1.1e-08 63.9 54 53.7
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 1.5e-08 63.5 55 54.5
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 1.5e-08 63.5 67 52.2
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 1.5e-08 63.5 55 56.4
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 1.9e-08 63.2 46 67.4
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 1.9e-08 63.2 56 57.1
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 1.9e-08 63.2 81 45.7
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 2.5e-08 62.8 54 57.4
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 3.3e-08 62.4 45 64.4
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 5.6e-08 61.6 62 53.2
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 5.6e-08 61.6 55 60.0
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 5.6e-08 61.6 68 50.0
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 7.3e-08 61.2 54 55.6
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 7.3e-08 61.2 54 55.6
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 7.3e-08 61.2 54 53.7
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 7.3e-08 61.2 56 53.6
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 9.5e-08 60.8 70 48.6
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 9.5e-08 60.8 61 54.1
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 1.2e-07 60.5 58 60.3
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 1.6e-07 60.1 49 59.2
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 2.1e-07 59.7 54 55.6
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 2.1e-07 59.7 60 53.3
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 2.8e-07 59.3 59 52.5
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 4.7e-07 58.5 56 53.6
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 4.7e-07 58.5 49 61.2
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 4.7e-07 58.5 49 57.1
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 6.1e-07 58.2 53 56.6
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 6.1e-07 58.2 68 42.6
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 6.1e-07 58.2 77 42.9
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 8.0e-07 57.8 58 50.0
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 8.0e-07 57.8 77 42.9
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.0e-06 57.4 60 55.0
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.8e-06 56.6 41 65.9
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 1.8e-06 56.6 62 46.8
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 3.0e-06 55.8 60 53.3
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 3.0e-06 55.8 66 50.0
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 3.0e-06 55.8 50 54.0
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 3.0e-06 55.8 50 54.0
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 4.0e-06 55.5 49 53.1
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 4.0e-06 55.5 50 60.0
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 5.2e-06 55.1 61 47.5
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 6.8e-06 54.7 60 50.0
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 8.9e-06 54.3 60 53.3
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 8.9e-06 54.3 50 52.0
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 8.9e-06 54.3 49 51.0


User provided reference genes

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