Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C516T2 Lonicera japonica HOM05D002342 ORTHO05D002407 1.6e-67 259.6 167 100.0
Lj6A526G34 Lonicera japonica HOM05D002342 ORTHO05D002407 4.1e-34 148.7 81 92.6
Lj6C526T4 Lonicera japonica HOM05D002342 ORTHO05D002407 3.6e-30 135.6 94 75.5
Lj6A516T56 Lonicera japonica HOM05D002342 ORTHO05D002407 1.0e-29 134.0 91 76.9
Lj6C522G10 Lonicera japonica HOM05D002342 ORTHO05D002407 3.0e-29 132.5 90 75.6
Lj6P517T17 Lonicera japonica HOM05D002342 ORTHO05D002407 1.4e-26 123.6 167 47.9
CSS0000956 Camellia sinensis var. sinensis HOM05D002342 ORTHO05D002407 4.5e-25 118.6 170 66.5
Dinv27218 Davidia involucrata HOM05D002342 ORTHO05D002407 1.2e-22 110.5 194 59.3
Dinv38212 Davidia involucrata HOM05D002342 ORTHO05D002407 1.2e-22 110.5 87 67.8
Nitab4.5_0000401g0100 Nicotiana tabacum HOM05D002342 ORTHO05D002407 1.4e-21 107.1 85 67.1
Oeu055768.2 Olea europaea HOM05D002342 ORTHO05D002407 3.9e-21 105.5 180 45.6
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 2.6e-20 102.8 168 47.6
Manes.03G146000 Manihot esculenta HOM05D002342 ORTHO05D002407 5.7e-20 101.7 79 65.8
Rhsim09G0058500 Rhododendron simsii HOM05D002342 ORTHO05D002407 5.7e-20 101.7 71 71.8
MBI04_g21151_MAGBIO Magnolia biondii HOM05D002342 ORTHO05D002407 7.4e-20 101.3 81 63.0
RcHm_v2.0_Chr6g0275261 Rosa chinensis HOM05D002342 ORTHO05D002407 1.3e-19 100.5 168 42.3
Nn1g07933 Nelumbo nucifera HOM05D002342 ORTHO05D002407 1.7e-19 100.1 89 57.3
RcHm_v2.0_Chr4g0414341 Rosa chinensis HOM05D002342 ORTHO05D002407 1.7e-19 100.1 170 41.2
PSO063G4028 Papaver somniferum HOM05D002342 ORTHO05D002407 2.2e-19 99.8 169 50.9
DCAR_002789 Daucus carota HOM05D002342 ORTHO05D002407 2.8e-19 99.4 175 50.3
Prupe.1G159200 Prunus persica HOM05D002342 ORTHO05D002407 3.7e-19 99.0 84 61.9
TAR365G0670 Trochodendron aralioides HOM05D002342 ORTHO05D002407 3.7e-19 99.0 87 58.6
TAR365G0690 Trochodendron aralioides HOM05D002342 ORTHO05D002407 3.7e-19 99.0 87 58.6
Actinidia23411 Actinidia chinensis HOM05D002342 ORTHO05D002407 4.8e-19 98.6 88 60.2
Lj6C524T11 Lonicera japonica HOM05D002342 ORTHO05D002407 4.8e-19 98.6 155 56.8
GSVIVG01020920001 Vitis vinifera HOM05D002342 ORTHO05D002407 6.3e-19 98.2 76 65.8
DCAR_030811 Daucus carota HOM05D002342 ORTHO05D002407 1.1e-18 97.4 169 45.0
FAN15G0433 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.1e-18 97.4 170 42.4
Ciclev10004121m.g Citrus clementina HOM05D002342 ORTHO05D002407 1.4e-18 97.1 197 48.2
HanXRQChr16g0498001 Helianthus annuus HOM05D002342 ORTHO05D002407 1.4e-18 97.1 169 40.8
PGR083G1386 Punica granatum HOM05D002342 ORTHO05D002407 1.4e-18 97.1 166 43.4
FAN24G1108 Fragaria x ananassa HOM05D002342 ORTHO05D002407 1.8e-18 96.7 170 41.2
Lj4g0001754 Lotus japonicus HOM05D002342 ORTHO05D002407 1.8e-18 96.7 165 51.5
PSO017G5596 Papaver somniferum HOM05D002342 ORTHO05D002407 2.4e-18 96.3 80 63.8
TWI09G0668 Tripterygium wilfordii HOM05D002342 ORTHO05D002407 4.1e-18 95.5 66 69.7
Eucgr.H02758 Eucalyptus grandis HOM05D002342 ORTHO05D002407 7.0e-18 94.7 81 61.7
FvH4_2g13620 Fragaria vesca HOM05D002342 ORTHO05D002407 1.6e-17 93.6 170 40.6
Cc03_g08030 Coffea canephora HOM05D002342 ORTHO05D002407 2.0e-17 93.2 68 67.6
MD04G1012900 Malus domestica HOM05D002342 ORTHO05D002407 2.0e-17 93.2 164 40.9
Eucgr.H02752 Eucalyptus grandis HOM05D002342 ORTHO05D002407 2.6e-17 92.8 72 63.9
Sopen09g034970 Solanum pennellii HOM05D002342 ORTHO05D002407 2.6e-17 92.8 77 58.4
Aqoxy2G03980 Aquilegia oxysepala HOM05D002342 ORTHO05D002407 4.5e-17 92.0 74 62.2
Migut.N01843 Erythranthe guttata HOM05D002342 ORTHO05D002407 4.5e-17 92.0 67 70.1
HanXRQChr02g0059031 Helianthus annuus HOM05D002342 ORTHO05D002407 1.7e-16 90.1 168 38.1
arahy.Tifrunner.gnm1.ann1.ZGTC82 Arachis hypogaea HOM05D002342 ORTHO05D002407 2.2e-16 89.7 171 39.8
Migut.N00402 Erythranthe guttata HOM05D002342 ORTHO05D002407 2.2e-16 89.7 172 39.5
QL05p014269 Quercus lobata HOM05D002342 ORTHO05D002407 2.2e-16 89.7 66 62.1
Sed0020750 Sechium edule HOM05D002342 ORTHO05D002407 2.2e-16 89.7 71 62.0
FAN17G0157 Fragaria x ananassa HOM05D002342 ORTHO05D002407 2.9e-16 89.4 186 35.5
PGSC0003DMG401026419 Solanum tuberosum HOM05D002342 ORTHO05D002407 2.9e-16 89.4 65 67.7
QL05p014602 Quercus lobata HOM05D002342 ORTHO05D002407 5.0e-16 88.6 66 60.6
SHI00028 Sapria himalayana HOM05D002342 ORTHO05D002407 6.5e-16 88.2 82 56.1
Hma1.2p1_0383F.1_g140360 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 8.5e-16 87.8 162 37.0
Sc13g0000230 Simmondsia chinensis HOM05D002342 ORTHO05D002407 8.5e-16 87.8 89 50.6
Haze_11629 Corylus avellana HOM05D002342 ORTHO05D002407 1.5e-15 87.0 68 60.3
Hma1.2p1_0383F.1_g140570 Hydrangea macrophylla HOM05D002342 ORTHO05D002407 1.9e-15 86.7 67 61.2
MD04G1013300 Malus domestica HOM05D002342 ORTHO05D002407 1.9e-15 86.7 73 60.3
Haze_11626 Corylus avellana HOM05D002342 ORTHO05D002407 3.2e-15 85.9 68 60.3
Migut.G00912 Erythranthe guttata HOM05D002342 ORTHO05D002407 3.2e-15 85.9 179 35.2
Lsat_1_v5_gn_6_60921 Lactuca sativa HOM05D002342 ORTHO05D002407 4.2e-15 85.5 63 65.1
Hund05344 Selenicereus undatus HOM05D002342 ORTHO05D002407 5.5e-15 85.1 83 51.8
Cfa014941 Carpinus fangiana HOM05D002342 ORTHO05D002407 7.2e-15 84.7 68 58.8
Potri.001G317200 Populus trichocarpa HOM05D002342 ORTHO05D002407 7.2e-15 84.7 202 48.5
CiPaw.01G119200 Carya illinoinensis HOM05D002342 ORTHO05D002407 9.4e-15 84.3 170 38.2
ClCG05G003260 Citrullus lanatus HOM05D002342 ORTHO05D002407 9.4e-15 84.3 71 56.3
Glyma.08G111400 Glycine max HOM05D002342 ORTHO05D002407 1.2e-14 84.0 84 53.6
vmacro00456 Vaccinium macrocarpon HOM05D002342 ORTHO05D002407 1.2e-14 84.0 201 35.8
AUR62018583 Chenopodium quinoa HOM05D002342 ORTHO05D002407 2.7e-14 82.8 81 50.6
VMungo1127G1482 Vigna mungo HOM05D002342 ORTHO05D002407 2.7e-14 82.8 83 51.8
Cpa.g.c27575.1 Carica papaya HOM05D002342 ORTHO05D002407 3.6e-14 82.4 68 60.3
RcHm_v2.0_Chr4g0414351 Rosa chinensis HOM05D002342 ORTHO05D002407 3.6e-14 82.4 91 47.3
ECA233G6204 Erigeron canadensis HOM05D002342 ORTHO05D002407 4.7e-14 82.0 67 61.2
Medtr8g085280 Medicago truncatula HOM05D002342 ORTHO05D002407 6.1e-14 81.6 70 58.6
Prupe.1G159100 Prunus persica HOM05D002342 ORTHO05D002407 6.1e-14 81.6 67 58.2
Sabra16G0200600 Salix brachista HOM05D002342 ORTHO05D002407 6.1e-14 81.6 66 60.6
SGA_v2.0_scaffold31G12585 Striga asiatica HOM05D002342 ORTHO05D002407 6.1e-14 81.6 68 57.4
Lsat_1_v5_gn_6_60880 Lactuca sativa HOM05D002342 ORTHO05D002407 8.0e-14 81.3 80 55.0
Phvul.003G291200 Phaseolus vulgaris HOM05D002342 ORTHO05D002407 1.0e-13 80.9 78 56.4
CAN.G1333.6 Capsicum annuum HOM05D002342 ORTHO05D002407 1.4e-13 80.5 55 67.3
MD04G1012800 Malus domestica HOM05D002342 ORTHO05D002407 1.4e-13 80.5 152 48.0
Atru.chr4.1618 Acer truncatum HOM05D002342 ORTHO05D002407 1.8e-13 80.1 68 54.4
Ca_17971_v3 Cicer arietinum L. HOM05D002342 ORTHO05D002407 1.8e-13 80.1 67 58.2
Atru.chr4.1623 Acer truncatum HOM05D002342 ORTHO05D002407 2.3e-13 79.7 68 54.4
PSO063G7363 Papaver somniferum HOM05D002342 ORTHO05D002407 2.3e-13 79.7 150 42.0
TPR.G11869 Trifolium pratense HOM05D002342 ORTHO05D002407 4.0e-13 79.0 68 55.9
CsaV3_3G010890 Cucumis sativus L. HOM05D002342 ORTHO05D002407 6.7e-13 78.2 66 54.5
Migut.N01844 Erythranthe guttata HOM05D002342 ORTHO05D002407 6.7e-13 78.2 66 57.6
QL05p014243 Quercus lobata HOM05D002342 ORTHO05D002407 6.7e-13 78.2 66 57.6
QL05p014435 Quercus lobata HOM05D002342 ORTHO05D002407 6.7e-13 78.2 66 57.6
unitig_8.g4999 Utricularia gibba HOM05D002342 ORTHO05D002407 6.7e-13 78.2 79 50.6
PSO017G1666 Papaver somniferum HOM05D002342 ORTHO05D002407 8.8e-13 77.8 77 50.6
CANSAT78G2520 Cannabis sativa HOM05D002342 ORTHO05D002407 1.2e-12 77.4 78 48.7
HanXRQChr11g0339061 Helianthus annuus HOM05D002342 ORTHO05D002407 1.2e-12 77.4 72 54.2
Psat7g074440 Pisum sativum HOM05D002342 ORTHO05D002407 2.0e-12 76.6 68 58.8
Gohir.A03G095600 Gossypium hirsutum HOM05D002342 ORTHO05D002407 4.4e-12 75.5 70 52.9
Lalb_Chr12g0205531 Lupinus albus HOM05D002342 ORTHO05D002407 4.4e-12 75.5 81 51.9
ECA233G4700 Erigeron canadensis HOM05D002342 ORTHO05D002407 5.7e-12 75.1 169 40.8
QL05p014183 Quercus lobata HOM05D002342 ORTHO05D002407 5.7e-12 75.1 60 61.7
Carub.0007s2871 Capsella rubella HOM05D002342 ORTHO05D002407 1.3e-11 73.9 76 53.9
AL7G42760 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.7e-11 73.6 73 54.8
Gohir.D02G113900 Gossypium hirsutum HOM05D002342 ORTHO05D002407 2.8e-11 72.8 169 34.3
THA.LOC104804807 Tarenaya hassleriana HOM05D002342 ORTHO05D002407 3.7e-11 72.4 66 56.1
Zm00001eb061370 Zea mays HOM05D002342 ORTHO05D002407 6.3e-11 71.6 75 50.7
Thhalv10024181m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 8.2e-11 71.2 73 52.1
CARHR219530 Cardamine hirsuta HOM05D002342 ORTHO05D002407 1.1e-10 70.9 66 54.5
Ah.14g086370 Amaranthus hybridus HOM05D002342 ORTHO05D002407 1.4e-10 70.5 157 31.8
AT4G13750 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.4e-10 70.5 73 53.4
BcaB04g17657 Brassica carinata HOM05D002342 ORTHO05D002407 1.4e-10 70.5 73 52.1
Gorai.005G129600 Gossypium raimondii HOM05D002342 ORTHO05D002407 1.4e-10 70.5 169 33.7
Atru.chr4.1628 Acer truncatum HOM05D002342 ORTHO05D002407 1.8e-10 70.1 70 50.0
Aa31LG9G3890 Aethionema arabicum HOM05D002342 ORTHO05D002407 2.4e-10 69.7 73 52.1
MELO3C006307.2 Cucumis melo HOM05D002342 ORTHO05D002407 2.4e-10 69.7 66 50.0
Duzib212G0344 Durio zibethinus HOM05D002342 ORTHO05D002407 2.4e-10 69.7 70 47.1
Sp7g11520 Schrenkiella parvula HOM05D002342 ORTHO05D002407 2.4e-10 69.7 73 52.1
BcaC07g37335 Brassica carinata HOM05D002342 ORTHO05D002407 4.1e-10 68.9 73 50.7
C08p07740 Brassica napus HOM05D002342 ORTHO05D002407 4.1e-10 68.9 73 50.7
BolC8t47622H Brassica oleracea HOM05D002342 ORTHO05D002407 4.1e-10 68.9 73 50.7
BraA08t32682Z Brassica rapa HOM05D002342 ORTHO05D002407 4.1e-10 68.9 73 50.7
Os03g0803800 Oryza sativa ssp. japonica HOM05D002342 ORTHO05D002407 4.1e-10 68.9 67 50.7
AUR62020836 Chenopodium quinoa HOM05D002342 ORTHO05D002407 5.3e-10 68.6 165 35.8
FvH4_4g13660 Fragaria vesca HOM05D002342 ORTHO05D002407 7.0e-10 68.2 160 32.5
CARHR008150 Cardamine hirsuta HOM05D002342 ORTHO05D002407 9.1e-10 67.8 64 54.7
A08p06660 Brassica napus HOM05D002342 ORTHO05D002407 1.2e-09 67.4 73 50.7
AT1G08300 Arabidopsis thaliana HOM05D002342 ORTHO05D002407 1.6e-09 67.0 66 51.5
Thecc.04G199700 Theobroma cacao HOM05D002342 ORTHO05D002407 1.6e-09 67.0 182 35.7
HPP92_003883 Vanilla planifolia HOM05D002342 ORTHO05D002407 1.6e-09 67.0 63 52.4
FAN07G2373 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.5e-09 65.9 166 32.5
AL1G18700 Arabidopsis lyrata HOM05D002342 ORTHO05D002407 1.0e-08 64.3 65 52.3
FAN22G0412 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.8e-08 62.4 159 29.6
Carub.0001s0765 Capsella rubella HOM05D002342 ORTHO05D002407 5.0e-08 62.0 81 45.7
A06p05320 Brassica napus HOM05D002342 ORTHO05D002407 1.1e-07 60.8 90 47.8
BraA06t23740Z Brassica rapa HOM05D002342 ORTHO05D002407 1.1e-07 60.8 83 49.4
BcaB07g34075 Brassica carinata HOM05D002342 ORTHO05D002407 1.9e-07 60.1 66 51.5
BolC5t29395H Brassica oleracea HOM05D002342 ORTHO05D002407 4.2e-07 58.9 71 50.7
C05p06400 Brassica napus HOM05D002342 ORTHO05D002407 5.5e-07 58.5 94 43.6
Sp1g06930 Schrenkiella parvula HOM05D002342 ORTHO05D002407 9.4e-07 57.8 64 50.0
BcaB07g34076 Brassica carinata HOM05D000444 ORTHO05D000489 1.6e-06 57.0 66 51.5
Thhalv10006953m.g Eutrema salsugineum HOM05D002342 ORTHO05D002407 3.6e-06 55.8 66 47.0
FAN12G2750 Fragaria x ananassa HOM05D002342 ORTHO05D002407 3.6e-06 55.8 55 47.3
Cfa014942 Carpinus fangiana HOM05D002342 ORTHO05D002407 4.7e-06 55.5 41 63.4
VMungo1383G2708 Vigna mungo HOM05D002342 ORTHO05D002407 4.7e-06 55.5 62 51.6


User provided reference genes

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