Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C375T0 Lonicera japonica HOM05D004865 ORTHO05D005949 9.2e-98 360.1 173 100.0
Lj6P379T11 Lonicera japonica HOM05D004865 ORTHO05D005949 1.8e-61 239.6 112 98.2
Lj6P378T3 Lonicera japonica HOM05D004865 ORTHO05D005949 4.0e-61 238.4 112 97.3
Lj6P371T8 Lonicera japonica HOM05D004865 ORTHO05D005949 2.6e-60 235.7 112 95.5
Lj6P373T4 Lonicera japonica HOM05D004865 ORTHO05D005949 7.9e-57 224.2 112 91.1
ClCG11G000590 Citrullus lanatus HOM05D004865 ORTHO05D005949 1.9e-42 176.4 171 53.2
ClCG03G011140 Citrullus lanatus HOM05D004865 ORTHO05D005949 3.6e-41 172.2 171 50.9
ClCG11G000680 Citrullus lanatus HOM05D004865 ORTHO05D005949 2.0e-39 166.4 171 50.3
Sed0022242 Sechium edule HOM05D004865 ORTHO05D005949 7.4e-39 164.5 171 49.1
ClCG03G011170 Citrullus lanatus HOM05D004865 ORTHO05D005949 6.9e-37 157.9 171 49.7
Lj6P371T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.5e-36 155.2 75 94.7
MD09G1162700 Malus domestica HOM05D004865 ORTHO05D005949 2.9e-35 152.5 169 45.6
Lj1P314T6 Lonicera japonica HOM05D004865 ORTHO05D005949 5.0e-35 151.8 114 61.4
MD09G1162600 Malus domestica HOM05D004865 ORTHO05D005949 1.9e-34 149.8 173 43.4
Lj1P308T9 Lonicera japonica HOM05D004865 ORTHO05D005949 5.5e-34 148.3 114 60.5
MD17G1147700 Malus domestica HOM05D004865 ORTHO05D005949 2.1e-33 146.4 125 53.6
Lj1P501T11 Lonicera japonica HOM05D004865 ORTHO05D005949 4.7e-33 145.2 107 58.9
Lj1P506T13 Lonicera japonica HOM05D004865 ORTHO05D005949 4.7e-33 145.2 107 58.9
MD09G1162900 Malus domestica HOM05D004865 ORTHO05D005949 7.9e-33 144.4 169 43.2
Lj1P506T10 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-32 143.7 116 56.9
Lj1P515T6 Lonicera japonica HOM05D004865 ORTHO05D005949 1.4e-32 143.7 116 56.9
Lj3A898T31 Lonicera japonica HOM05D004865 ORTHO05D005949 3.0e-32 142.5 171 44.4
Hma1.2p1_0543F.1_g175180 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 3.9e-32 142.1 162 46.3
Hma1.2p1_3336F.1_g335335 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 3.9e-32 142.1 162 46.3
CsaV3_1G044030 Cucumis sativus L. HOM05D004865 ORTHO05D005949 6.7e-32 141.4 173 45.1
MELO3C010083.2 Cucumis melo HOM05D004865 ORTHO05D005949 9.7e-31 137.5 172 43.6
Prupe.1G577300 Prunus persica HOM05D004865 ORTHO05D005949 1.8e-29 133.3 166 45.2
MD09G1163100 Malus domestica HOM05D004865 ORTHO05D005949 2.4e-29 132.9 166 44.6
FAN22G1472 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.2e-28 130.6 165 41.8
HanXRQChr14g0437021 Helianthus annuus HOM05D000041 ORTHO05D000452 5.9e-28 128.3 170 40.0
Lsat_1_v5_gn_8_2701 Lactuca sativa HOM05D000041 ORTHO05D000452 3.8e-27 125.6 177 38.4
FAN02G0162 Fragaria x ananassa HOM05D004865 ORTHO05D005949 5.0e-27 125.2 165 40.6
Prupe.2G116800 Prunus persica HOM05D004865 ORTHO05D005949 5.0e-27 125.2 170 42.9
AUR62031151 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.5e-27 124.4 164 40.9
MD05G1102400 Malus domestica HOM05D004865 ORTHO05D005949 8.5e-27 124.4 163 45.4
FAN09G4882 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.5e-26 123.6 104 51.0
FvH4_6g36010 Fragaria vesca HOM05D004865 ORTHO05D005949 2.5e-26 122.9 162 40.7
ECA233G0690 Erigeron canadensis HOM05D000041 ORTHO05D000452 3.2e-26 122.5 170 39.4
Ah.14g087230 Amaranthus hybridus HOM05D004865 ORTHO05D005949 5.5e-26 121.7 162 40.1
FAN14G5541 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.2e-25 120.6 104 50.0
AUR62036568 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.1e-25 119.8 164 39.6
SGA_v2.0_scaffold11G05644 Striga asiatica HOM05D004865 ORTHO05D005949 2.1e-25 119.8 169 39.6
EL10Ac8g20499 Beta vulgaris HOM05D004865 ORTHO05D005949 6.1e-25 118.2 162 38.9
Actinidia05767 Actinidia chinensis HOM05D004865 ORTHO05D005949 3.0e-24 115.9 168 38.7
Duzib212G1045 Durio zibethinus HOM05D004865 ORTHO05D005949 3.0e-24 115.9 169 39.6
Gohir.D10G128100 Gossypium hirsutum HOM05D004865 ORTHO05D005949 4.0e-24 115.5 171 36.8
Gorai.011G141300 Gossypium raimondii HOM05D004865 ORTHO05D005949 4.0e-24 115.5 171 36.8
Gohir.A10G138700 Gossypium hirsutum HOM05D004865 ORTHO05D005949 8.8e-24 114.4 171 36.8
FAN14G3467 Fragaria x ananassa HOM05D004865 ORTHO05D005949 1.1e-23 114.0 104 48.1
CSS0027528 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 2.0e-23 113.2 153 41.2
Cre07.g321800 Chlamydomonas reinhardtii HOM05D004865 ORTHO05D005949 4.4e-23 112.1 173 38.2
AUR62031152 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.7e-23 110.9 173 38.7
SGA_v2.0_scaffold11G05649 Striga asiatica HOM05D004865 ORTHO05D005949 9.7e-23 110.9 167 37.1
Ah.14g087250 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.3e-22 110.5 118 48.3
DCAR_016015 Daucus carota HOM05D004865 ORTHO05D005949 1.3e-22 110.5 164 36.6
Ah.14g087240 Amaranthus hybridus HOM05D004865 ORTHO05D005949 2.2e-22 109.8 170 36.5
AUR62036569 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.3e-22 108.2 173 36.4
DCAR_016016 Daucus carota HOM05D004865 ORTHO05D005949 8.2e-22 107.8 168 35.7
Os04g0308500 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 8.2e-22 107.8 169 36.1
Os04g0310100 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 8.2e-22 107.8 169 36.1
Zm00001eb137430 Zea mays HOM05D004865 ORTHO05D005949 8.2e-22 107.8 161 37.9
Actinidia30931 Actinidia chinensis HOM05D004865 ORTHO05D005949 1.1e-21 107.5 171 37.4
DCAR_015954 Daucus carota HOM05D004865 ORTHO05D005949 1.4e-21 107.1 165 37.0
Zm00001eb137370 Zea mays HOM05D004865 ORTHO05D005949 1.4e-21 107.1 161 37.9
MD17G1148100 Malus domestica HOM05D004865 ORTHO05D005949 2.0e-20 103.2 104 47.1
MD17G1148200 Malus domestica HOM05D004865 ORTHO05D005949 2.0e-20 103.2 104 47.1
Hma1.2p1_1768F.1_g301530 Hydrangea macrophylla HOM05D004865 ORTHO05D005949 2.6e-20 102.8 104 45.2
Os04g0308400 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.5e-20 102.4 172 34.3
Os04g0310200 Oryza sativa ssp. japonica HOM05D004865 ORTHO05D005949 3.5e-20 102.4 172 34.3
SGA_v2.0_scaffold163G38046 Striga asiatica HOM05D004865 ORTHO05D005949 3.5e-20 102.4 169 36.7
Actinidia30932 Actinidia chinensis HOM05D004865 ORTHO05D005949 5.9e-20 101.7 173 36.4
CSS0005385 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 7.7e-20 101.3 150 41.3
Sc24g0002420 Simmondsia chinensis HOM05D004865 ORTHO05D005949 7.7e-20 101.3 181 37.6
AUR62027395 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.2e-19 99.8 170 37.1
Sc22g0001740 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.8e-19 99.0 172 34.9
AUR62014652 Chenopodium quinoa HOM05D004865 ORTHO05D005949 6.5e-19 98.2 125 40.8
Sc06g0005920 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.5e-19 98.2 150 37.3
AUR62027396 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.1e-18 97.4 169 37.3
Sc09g0006530 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.1e-18 97.4 172 36.0
CSS0028314 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.5e-18 97.1 152 42.8
Sc22g0001760 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.5e-18 96.3 171 36.8
Sc24g0002410 Simmondsia chinensis HOM05D004865 ORTHO05D005949 4.2e-18 95.5 181 35.9
CsaV3_4G030090 Cucumis sativus L. HOM05D004865 ORTHO05D005949 5.5e-18 95.1 65 61.5
Sc22g0001730 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.5e-18 95.1 173 37.0
ECA233G5215 Erigeron canadensis HOM05D004865 ORTHO05D005949 1.2e-17 94.0 163 35.6
AUR62012544 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.6e-17 93.6 177 35.6
ECA233G1731 Erigeron canadensis HOM05D004865 ORTHO05D005949 2.7e-17 92.8 118 39.8
EL10As6g23632 Beta vulgaris HOM05D004865 ORTHO05D005949 4.7e-17 92.0 175 34.9
Sc22g0001720 Simmondsia chinensis HOM05D004865 ORTHO05D005949 6.1e-17 91.7 130 39.2
Ah.14g087270 Amaranthus hybridus HOM05D004865 ORTHO05D005949 8.0e-17 91.3 100 49.0
AUR62012571 Chenopodium quinoa HOM05D004865 ORTHO05D005949 8.0e-17 91.3 162 35.8
Sc23g0005380 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.0e-16 90.9 166 34.3
CSS0032746 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 1.4e-16 90.5 149 36.9
Ah.06g181840 Amaranthus hybridus HOM05D004865 ORTHO05D005949 1.8e-16 90.1 169 36.1
Duzib052G0039 Durio zibethinus HOM05D004865 ORTHO05D005949 1.8e-16 90.1 169 36.7
Sc02g0003580 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.8e-16 90.1 174 34.5
HanXRQChr03g0060861 Helianthus annuus HOM05D004865 ORTHO05D005949 3.0e-16 89.4 164 35.4
Sc09g0006330 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.0e-16 89.4 174 33.3
HanXRQChr03g0060851 Helianthus annuus HOM05D004865 ORTHO05D005949 5.2e-16 88.6 164 35.4
CSS0013136 Camellia sinensis var. sinensis HOM05D004865 ORTHO05D005949 8.8e-16 87.8 141 37.6
Sc09g0006350 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.5e-15 87.0 139 33.1
Sc16g0002960 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.0e-15 86.7 143 39.2
EL10As6g23631 Beta vulgaris HOM05D004865 ORTHO05D005949 3.4e-15 85.9 175 33.1
AUR62044724 Chenopodium quinoa HOM05D004865 ORTHO05D005949 3.4e-15 85.9 127 40.2
Zm00001eb137410 Zea mays HOM05D004865 ORTHO05D005949 5.7e-15 85.1 147 34.7
AUR62044116 Chenopodium quinoa HOM05D004865 ORTHO05D005949 9.8e-15 84.3 94 43.6
Sc22g0001710 Simmondsia chinensis HOM05D004865 ORTHO05D005949 1.3e-14 84.0 173 31.8
Zm00001eb137380 Zea mays HOM05D004865 ORTHO05D005949 1.7e-14 83.6 147 34.0
MD17G1148000 Malus domestica HOM05D004865 ORTHO05D005949 2.2e-14 83.2 151 37.1
ECA233G6014 Erigeron canadensis HOM05D004865 ORTHO05D005949 3.7e-14 82.4 174 33.9
Sc09g0006340 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.3e-14 81.3 164 32.9
SGA_v2.0_scaffold105G30447 Striga asiatica HOM05D004865 ORTHO05D005949 1.8e-13 80.1 169 27.8
Sc17g0004370 Simmondsia chinensis HOM05D004865 ORTHO05D005949 2.4e-13 79.7 120 36.7
EL10Ac8g20500 Beta vulgaris HOM05D004865 ORTHO05D005949 5.4e-13 78.6 169 30.8
ECA233G0596 Erigeron canadensis HOM05D004865 ORTHO05D000001 4.5e-12 75.5 107 37.4
Prupe.2G116900 Prunus persica HOM05D004865 ORTHO05D005949 1.0e-11 74.3 196 29.6
AUR62014649 Chenopodium quinoa HOM05D004865 ORTHO05D005949 1.7e-11 73.6 112 34.8
HanXRQChr17g0555801 Helianthus annuus HOM05D004865 ORTHO05D005949 1.7e-11 73.6 107 39.3
AUR62012547 Chenopodium quinoa HOM05D004865 ORTHO05D005949 2.2e-11 73.2 142 33.1
EL10Ac6g13634 Beta vulgaris HOM05D004865 ORTHO05D005949 2.9e-11 72.8 113 38.1
HanXRQChr17g0555831 Helianthus annuus HOM05D004865 ORTHO05D005949 2.9e-11 72.8 142 33.8
Sc22g0001750 Simmondsia chinensis HOM05D004865 ORTHO05D005949 3.8e-11 72.4 172 30.8
Sc24g0002440 Simmondsia chinensis HOM05D004865 ORTHO05D005949 5.0e-11 72.0 146 35.6
HanXRQChr14g0461501 Helianthus annuus HOM05D004865 ORTHO05D005949 1.9e-10 70.1 75 41.3
Sed0017379 Sechium edule HOM05D004865 ORTHO05D005949 2.5e-10 69.7 117 29.1
Lsat_1_v5_gn_6_87560 Lactuca sativa HOM05D004865 ORTHO05D005949 4.2e-10 68.9 131 33.6
ECA233G2698 Erigeron canadensis HOM05D004865 ORTHO05D005949 7.2e-10 68.2 161 29.8
Sed0001554 Sechium edule HOM05D004865 ORTHO05D034719 9.4e-10 67.8 170 28.2
Sed0006015 Sechium edule HOM05D004865 ORTHO05D034719 1.6e-09 67.0 169 29.0
Sc16g0002940 Simmondsia chinensis HOM05D004865 ORTHO05D005949 8.8e-08 61.2 71 43.7
ECA233G5781 Erigeron canadensis HOM05D004865 ORTHO05D005949 6.3e-06 55.1 126 31.0


User provided reference genes

Program Settings