Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C285T2 Lonicera japonica HOM05D005420 ORTHO05D006524 8.9e-105 383.6 197 100.0
CANSAT56G1087 Cannabis sativa HOM05D005420 ORTHO05D006524 4.3e-99 364.8 197 94.9
CSS0022736 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 3.6e-98 361.7 197 94.4
Prupe.7G269700 Prunus persica HOM05D005420 ORTHO05D006524 4.7e-98 361.3 197 93.9
CSS0017727 Camellia sinensis var. sinensis HOM05D005420 ORTHO05D006524 8.0e-98 360.5 197 93.9
arahy.Tifrunner.gnm1.ann1.D6NWCJ Arachis hypogaea HOM05D005420 ORTHO05D006524 5.2e-97 357.8 197 93.4
arahy.Tifrunner.gnm1.ann1.EMGW5K Arachis hypogaea HOM05D005420 ORTHO05D006524 5.2e-97 357.8 197 93.4
MD00G1087500 Malus domestica HOM05D005420 ORTHO05D006524 6.8e-97 357.5 197 93.4
Cfa008513 Carpinus fangiana HOM05D005420 ORTHO05D006524 1.2e-96 356.7 197 92.9
CiPaw.01G201600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.2e-96 356.7 196 93.4
FvH4_1g00160 Fragaria vesca HOM05D005420 ORTHO05D006524 1.2e-96 356.7 197 91.9
FAN28G0609 Fragaria x ananassa HOM05D005420 ORTHO05D006524 1.2e-96 356.7 197 91.9
TAR636G0539 Trochodendron aralioides HOM05D005420 ORTHO05D006524 2.0e-96 355.9 197 91.9
DCAR_005460 Daucus carota HOM05D005420 ORTHO05D006524 2.6e-96 355.5 199 93.5
RcHm_v2.0_Chr2g0084451 Rosa chinensis HOM05D005420 ORTHO05D006524 2.6e-96 355.5 197 91.4
MSTRG.24552 Avicennia marina HOM05D005420 ORTHO05D006524 3.4e-96 355.1 197 92.4
ClCG09G014850 Citrullus lanatus HOM05D005420 ORTHO05D006524 5.8e-96 354.4 196 92.9
Ciclev10012405m.g Citrus clementina HOM05D005420 ORTHO05D006524 7.5e-96 354.0 197 91.9
FAN26G3138 Fragaria x ananassa HOM05D005420 ORTHO05D006524 7.5e-96 354.0 197 90.9
Glyma.07G273700 Glycine max HOM05D005420 ORTHO05D006524 7.5e-96 354.0 197 91.4
MD15G1143300 Malus domestica HOM05D005420 ORTHO05D006524 7.5e-96 354.0 197 92.4
Dinv33245 Davidia involucrata HOM05D005420 ORTHO05D006524 9.8e-96 353.6 199 92.5
CsaV3_7G022350 Cucumis sativus L. HOM05D005420 ORTHO05D006524 1.3e-95 353.2 196 92.3
Migut.G00921 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.3e-95 353.2 197 91.9
Phvul.003G074600 Phaseolus vulgaris HOM05D005420 ORTHO05D006524 1.3e-95 353.2 197 91.9
Glyma.17G000800 Glycine max HOM05D005420 ORTHO05D006524 1.7e-95 352.8 197 90.9
GSVIVG01038249001 Vitis vinifera HOM05D005420 ORTHO05D006524 2.2e-95 352.4 197 91.9
VMungo1215G3385 Vigna mungo HOM05D005420 ORTHO05D006524 3.7e-95 351.7 197 90.9
ECA248G1232 Erigeron canadensis HOM05D005420 ORTHO05D006524 4.9e-95 351.3 197 92.4
SalBow3G4646 Salvia bowleyana HOM05D005420 ORTHO05D006524 4.9e-95 351.3 197 90.9
Aqoxy1G01859 Aquilegia oxysepala HOM05D005420 ORTHO05D006524 6.4e-95 350.9 199 92.0
Cc03_g15990 Coffea canephora HOM05D005420 ORTHO05D006524 6.4e-95 350.9 197 90.4
Eucgr.H01455 Eucalyptus grandis HOM05D005420 ORTHO05D006524 8.3e-95 350.5 197 91.4
MBI07_g10354_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 8.3e-95 350.5 197 88.8
Nitab4.5_0000013g0040 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.4e-94 349.7 197 91.4
Nitab4.5_0008205g0010 Nicotiana tabacum HOM05D005420 ORTHO05D006524 1.4e-94 349.7 197 91.4
Sed0010932 Sechium edule HOM05D005420 ORTHO05D006524 1.9e-94 349.4 196 90.3
TAR365G1242 Trochodendron aralioides HOM05D005420 ORTHO05D006524 1.9e-94 349.4 197 89.8
QL10p064332 Quercus lobata HOM05D005420 ORTHO05D006524 3.2e-94 348.6 195 90.3
FAN23G1410 Fragaria x ananassa HOM05D005420 ORTHO05D006524 4.1e-94 348.2 197 90.4
PGR119G0486 Punica granatum HOM05D005420 ORTHO05D006524 4.1e-94 348.2 197 90.9
Atru.chr12.1712 Acer truncatum HOM05D005420 ORTHO05D006524 7.0e-94 347.4 197 90.4
Manes.12G003300 Manihot esculenta HOM05D005420 ORTHO05D006524 7.0e-94 347.4 197 89.8
Potri.013G084300 Populus trichocarpa HOM05D005420 ORTHO05D006524 7.0e-94 347.4 197 88.8
EL10Ac3g06165 Beta vulgaris HOM05D005420 ORTHO05D006524 9.2e-94 347.1 197 89.3
Cpa.g.sc151.6 Carica papaya HOM05D005420 ORTHO05D006524 1.6e-93 346.3 197 89.8
HanXRQChr11g0343501 Helianthus annuus HOM05D005420 ORTHO05D006524 1.6e-93 346.3 197 91.4
Duzib177G0155 Durio zibethinus HOM05D005420 ORTHO05D006524 2.0e-93 345.9 197 89.3
HanXRQChr01g0023651 Helianthus annuus HOM05D005420 ORTHO05D006524 2.0e-93 345.9 195 91.8
Actinidia34566 Actinidia chinensis HOM05D005420 ORTHO05D006524 2.7e-93 345.5 197 89.8
CDE09G0694 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 4.6e-93 344.7 197 87.8
Solyc08g015620.3 Solanum lycopersicum HOM05D005420 ORTHO05D006524 7.8e-93 344.0 197 89.3
Sopen08g005610 Solanum pennellii HOM05D005420 ORTHO05D006524 7.8e-93 344.0 197 89.3
Thecc.05G186000 Theobroma cacao HOM05D005420 ORTHO05D006524 7.8e-93 344.0 197 89.3
CiPaw.02G124600 Carya illinoinensis HOM05D005420 ORTHO05D006524 1.0e-92 343.6 197 89.3
Peaxi162Scf01205g00032 Petunia axillaris HOM05D005420 ORTHO05D006524 1.0e-92 343.6 197 89.8
Lj4g0016379 Lotus japonicus HOM05D005420 ORTHO05D006524 2.3e-92 342.4 197 88.8
unitig_699.g19464 Utricularia gibba HOM05D005420 ORTHO05D006524 2.3e-92 342.4 195 89.2
AUR62023710 Chenopodium quinoa HOM05D005420 ORTHO05D006524 3.0e-92 342.0 197 87.8
Rhsim09G0003700 Rhododendron simsii HOM05D005420 ORTHO05D006524 3.9e-92 341.7 202 89.6
GSVIVG01026140001 Vitis vinifera HOM05D005420 ORTHO05D006524 3.9e-92 341.7 197 88.3
Duzib128G1088 Durio zibethinus HOM05D005420 ORTHO05D006524 5.0e-92 341.3 197 88.3
TWI36G0345 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 5.0e-92 341.3 197 88.3
Actinidia18399 Actinidia chinensis HOM05D005420 ORTHO05D006524 6.6e-92 340.9 197 88.8
unitig_27.g25143 Utricularia gibba HOM05D005420 ORTHO05D006524 6.6e-92 340.9 195 90.3
Sabra13G0078900 Salix brachista HOM05D005420 ORTHO05D006524 8.6e-92 340.5 197 87.8
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 1.1e-91 340.1 205 88.8
Aa31LG1G25640 Aethionema arabicum HOM05D005420 ORTHO05D006524 1.5e-91 339.7 185 92.4
ATR0743G098 Amborella trichopoda HOM05D005420 ORTHO05D006524 1.5e-91 339.7 197 85.8
AUR62002482 Chenopodium quinoa HOM05D005420 ORTHO05D006524 1.5e-91 339.7 197 87.3
PSO675G2924 Papaver somniferum HOM05D005420 ORTHO05D006524 1.9e-91 339.3 197 87.8
PSO732G0217 Papaver somniferum HOM05D005420 ORTHO05D006524 1.9e-91 339.3 197 87.8
BcaB06g29350 Brassica carinata HOM05D005420 ORTHO05D006524 2.5e-91 339.0 192 89.6
Thhalv10001571m.g Eutrema salsugineum HOM05D005420 ORTHO05D006524 3.3e-91 338.6 195 87.7
Lsat_1_v5_gn_1_76981 Lactuca sativa HOM05D005420 ORTHO05D006524 4.3e-91 338.2 189 91.5
Ah.07g203200 Amaranthus hybridus HOM05D005420 ORTHO05D006524 7.3e-91 337.4 197 86.3
AL4G42820 Arabidopsis lyrata HOM05D005420 ORTHO05D006524 7.3e-91 337.4 185 91.4
AT2G43945 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 7.3e-91 337.4 185 91.4
Carub.0004s2651 Capsella rubella HOM05D005420 ORTHO05D006524 7.3e-91 337.4 185 91.4
A03p24600 Brassica napus HOM05D005420 ORTHO05D006524 1.2e-90 336.7 195 86.7
Gohir.A02G106300 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.6e-90 336.3 197 87.3
Gohir.D03G071700 Gossypium hirsutum HOM05D005420 ORTHO05D006524 1.6e-90 336.3 197 87.3
Gorai.003G088300 Gossypium raimondii HOM05D005420 ORTHO05D006524 1.6e-90 336.3 197 87.3
Carub.0005s2660 Capsella rubella HOM05D005420 ORTHO05D006524 2.1e-90 335.9 197 85.8
CARHR139120 Cardamine hirsuta HOM05D005420 ORTHO05D006524 2.8e-90 335.5 194 88.1
THA.LOC104802345 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 2.8e-90 335.5 188 89.9
BcaC02g12350 Brassica carinata HOM05D005420 ORTHO05D006524 3.6e-90 335.1 192 89.1
C04p04880 Brassica napus HOM05D005420 ORTHO05D006524 3.6e-90 335.1 192 89.1
BolC4t22118H Brassica oleracea HOM05D005420 ORTHO05D006524 3.6e-90 335.1 192 89.1
C03p29330 Brassica napus HOM05D005420 ORTHO05D006524 6.2e-90 334.3 195 86.2
BolC3t15280H Brassica oleracea HOM05D005420 ORTHO05D006524 6.2e-90 334.3 195 86.2
A05p04100 Brassica napus HOM05D005420 ORTHO05D006524 8.0e-90 334.0 192 88.5
BraA05t19397Z Brassica rapa HOM05D005420 ORTHO05D006524 8.0e-90 334.0 192 88.5
SGA_v2.0_scaffold12G06218 Striga asiatica HOM05D005420 ORTHO05D006524 1.1e-89 333.6 203 85.7
BraA03t11665Z Brassica rapa HOM05D005420 ORTHO05D006524 2.3e-89 332.4 195 85.6
Aa31LG10G14100 Aethionema arabicum HOM05D005420 ORTHO05D006524 3.1e-89 332.0 192 87.0
BcaB02g08884 Brassica carinata HOM05D005420 ORTHO05D006524 3.1e-89 332.0 185 89.7
HPP92_024700 Vanilla planifolia HOM05D005420 ORTHO05D006524 3.1e-89 332.0 197 82.7
AT3G59870 Arabidopsis thaliana HOM05D005420 ORTHO05D006524 8.9e-89 330.5 197 84.8
THA.LOC104804283 Tarenaya hassleriana HOM05D005420 ORTHO05D006524 1.2e-88 330.1 188 89.4
Os01g0338600 Oryza sativa ssp. japonica HOM05D005420 ORTHO05D006524 1.1e-86 323.6 197 83.8
Zm00001eb159810 Zea mays HOM05D005420 ORTHO05D006524 2.4e-86 322.4 197 83.8
Psat4g001320 Pisum sativum HOM05D005420 ORTHO05D006524 7.0e-86 320.9 197 84.3
TWI36G1305 Tripterygium wilfordii HOM05D005420 ORTHO05D006524 7.8e-85 317.4 184 87.5
SMO367G0538 Selaginella moellendorffii HOM05D005420 ORTHO05D006524 6.6e-84 314.3 185 84.9
Sp4g26040 Schrenkiella parvula HOM05D005420 ORTHO05D006524 1.5e-83 313.2 182 86.3
SEGI_26827 Sequoiadendron giganteum HOM05D005420 ORTHO05D006524 1.9e-83 312.8 185 85.9
Pp3c8_21410 Physcomitrium patens HOM05D005420 ORTHO05D006524 9.5e-83 310.5 184 83.2
Mapoly0136s0029 Marchantia polymorpha HOM05D005420 ORTHO05D006524 2.1e-82 309.3 185 84.3
Pp3c24_16460 Physcomitrium patens HOM05D005420 ORTHO05D006524 3.6e-82 308.5 184 84.2
Haze_11131 Corylus avellana HOM05D005420 ORTHO05D006524 5.8e-80 301.2 333 55.0
Migut.N03031 Erythranthe guttata HOM05D005420 ORTHO05D006524 1.7e-79 299.7 196 80.6
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 1.1e-75 287.0 174 85.1
Manes.13G003200 Manihot esculenta HOM05D005420 ORTHO05D006524 1.9e-75 286.2 157 91.7
Nn7g37463 Nelumbo nucifera HOM05D005420 ORTHO05D006524 8.1e-74 280.8 165 87.9
Dinv24753 Davidia involucrata HOM05D005420 ORTHO05D006524 3.4e-72 275.4 152 94.7
Sc25g0003040 Simmondsia chinensis HOM05D005420 ORTHO05D006524 2.3e-68 262.7 152 88.2
Nn3g18334 Nelumbo nucifera HOM05D005420 ORTHO05D006524 6.6e-68 261.2 152 88.2
Hund22588 Selenicereus undatus HOM05D005420 ORTHO05D006524 1.5e-67 260.0 152 87.5
Medtr4g134910 Medicago truncatula HOM05D005420 ORTHO05D006524 9.6e-67 257.3 153 86.3
Lalb_Chr18g0044961 Lupinus albus HOM05D005420 ORTHO05D006524 1.3e-66 256.9 134 96.3
MCO05G102 Micromonas commoda HOM05D005420 ORTHO05D006524 2.0e-64 249.6 160 76.2
Cre16.g676450 Chlamydomonas reinhardtii HOM05D005420 ORTHO05D006524 1.3e-63 246.9 192 67.2
Atru.chr12.1711 Acer truncatum HOM05D005420 ORTHO05D006524 3.0e-60 235.7 193 69.4
PRCOL_00006877 Prasinoderma coloniale HOM05D005420 ORTHO05D006524 5.6e-59 231.5 160 70.0
Oeu022910.1 Olea europaea HOM05D005420 ORTHO05D006524 4.8e-58 228.4 133 89.5
Zm00001eb356860 Zea mays HOM05D005420 ORTHO05D006524 6.2e-58 228.0 197 64.0
Ca_13540_v3 Cicer arietinum L. HOM05D005420 ORTHO05D006524 1.5e-51 206.8 172 68.6
AagrBONN_evm.TU.Sc2ySwM_228.1821 Anthoceros agrestis HOM05D005420 ORTHO05D006524 1.2e-45 187.2 120 78.3
Sed0016168 Sechium edule HOM05D005420 ORTHO05D006524 5.0e-39 165.2 90 93.3
MBI07_g42072_MAGBIO Magnolia biondii HOM05D005420 ORTHO05D006524 1.9e-38 163.3 89 91.0
CDE02G3676 Ceratophyllum demersum HOM05D005420 ORTHO05D006524 4.8e-34 148.7 158 56.3
Pp3c20_1670 Physcomitrium patens HOM05D005420 ORTHO05D006524 5.3e-33 145.2 158 51.3
Eucgr.L00810 Eucalyptus grandis HOM05D005420 ORTHO05D006524 2.7e-29 132.9 82 82.9
Eucgr.H01440 Eucalyptus grandis HOM05D005420 ORTHO05D006524 1.4e-25 120.6 82 76.8
Lsat_1_v5_gn_1_75001 Lactuca sativa HOM05D005420 ORTHO05D006524 2.6e-24 116.3 78 73.1
Lsat_1_v5_gn_5_160100 Lactuca sativa HOM05D005420 ORTHO05D006524 1.1e-22 110.9 78 69.2
MSTRG.9265 Avicennia marina HOM05D005420 ORTHO05D006524 7.9e-21 104.8 82 70.7
CBR_g10867 Chara braunii HOM05D005420 ORTHO05D006524 2.0e-16 90.1 62 69.4
Lalb_Chr18g0044971 Lupinus albus HOM05D005420 ORTHO05D006524 2.9e-07 59.7 44 68.2
Sed0003231 Sechium edule HOM05D005420 ORTHO05D006524 6.5e-07 58.5 42 69.0


User provided reference genes

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