Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C238T5 Lonicera japonica HOM05D000604 ORTHO05D004512 9.2e-62 240.0 115 100.0
Lj9A677G36 Lonicera japonica HOM05D000604 ORTHO05D004512 9.3e-54 213.4 112 88.4
AUR62000905 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.6e-50 202.6 111 86.5
AUR62005070 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.6e-50 202.6 111 86.5
Lj6P238T8 Lonicera japonica HOM05D000604 ORTHO05D004512 3.6e-50 201.4 114 83.3
DCAR_020452 Daucus carota HOM05D000604 ORTHO05D004512 6.2e-50 200.7 112 79.5
ECA232G0151 Erigeron canadensis HOM05D000604 ORTHO05D004512 6.2e-50 200.7 112 82.1
Lsat_1_v5_gn_9_71340 Lactuca sativa HOM05D002827 ORTHO05D004512 8.1e-50 200.3 112 81.2
Lj6C237G2 Lonicera japonica HOM05D000604 ORTHO05D004512 1.1e-49 199.9 114 83.3
Dinv01785 Davidia involucrata HOM05D000604 ORTHO05D004512 1.4e-49 199.5 113 83.2
TAR633G1789 Trochodendron aralioides HOM05D000604 ORTHO05D004512 1.8e-49 199.1 112 83.0
TAR633G2382 Trochodendron aralioides HOM05D000604 ORTHO05D004512 1.8e-49 199.1 112 83.0
Nn3g21243 Nelumbo nucifera HOM05D000604 ORTHO05D004512 2.4e-49 198.7 112 83.0
Nn8g38559 Nelumbo nucifera HOM05D000604 ORTHO05D004512 2.4e-49 198.7 112 83.0
Rhsim05G0146600 Rhododendron simsii HOM05D000604 ORTHO05D004512 2.4e-49 198.7 112 83.9
PSO161G0104 Papaver somniferum HOM05D000604 ORTHO05D004512 5.3e-49 197.6 114 79.8
Ah.04g159950 Amaranthus hybridus HOM05D000604 ORTHO05D004512 6.9e-49 197.2 112 83.9
EL10Ac4g09280 Beta vulgaris HOM05D000604 ORTHO05D004512 6.9e-49 197.2 112 83.9
CSS0015734 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 9.0e-49 196.8 112 82.1
CSS0037056 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 9.0e-49 196.8 112 82.1
CSS0048299 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004512 9.0e-49 196.8 112 82.1
CDE11G1039 Ceratophyllum demersum HOM05D000604 ORTHO05D004512 1.2e-48 196.4 111 82.9
Actinidia28390 Actinidia chinensis HOM05D000604 ORTHO05D004512 1.5e-48 196.1 112 83.0
CDE05G3027 Ceratophyllum demersum HOM05D000604 ORTHO05D004512 1.5e-48 196.1 111 82.9
Nn4g26073 Nelumbo nucifera HOM05D000604 ORTHO05D004512 1.5e-48 196.1 112 82.1
Nitab4.5_0001165g0020 Nicotiana tabacum HOM05D000604 ORTHO05D004512 2.6e-48 195.3 111 82.9
SGA_v2.0_scaffold192G40625 Striga asiatica HOM05D000604 ORTHO05D004512 2.6e-48 195.3 112 81.2
vmacro19657 Vaccinium macrocarpon HOM05D000604 ORTHO05D004512 2.6e-48 195.3 112 83.9
Aqoxy3G00886 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 3.4e-48 194.9 112 79.5
Migut.J00575 Erythranthe guttata HOM05D000604 ORTHO05D004512 3.4e-48 194.9 112 82.1
Solyc01g098350.3 Solanum lycopersicum HOM05D000604 ORTHO05D004512 3.4e-48 194.9 112 82.1
Sopen01g041910 Solanum pennellii HOM05D000604 ORTHO05D004512 3.4e-48 194.9 112 82.1
PGSC0003DMG400022453 Solanum tuberosum HOM05D000604 ORTHO05D004512 3.4e-48 194.9 112 82.1
ATR0706G007 Amborella trichopoda HOM05D000604 ORTHO05D004512 4.4e-48 194.5 110 82.7
Hma1.2p1_0071F.1_g037955 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 7.6e-48 193.7 112 82.1
arahy.Tifrunner.gnm1.ann1.EVL1N6 Arachis hypogaea HOM05D000604 ORTHO05D004512 1.3e-47 193.0 112 79.5
arahy.Tifrunner.gnm1.ann1.LQ82RV Arachis hypogaea HOM05D000604 ORTHO05D004512 1.3e-47 193.0 112 79.5
Cc02_g32830 Coffea canephora HOM05D000604 ORTHO05D004512 1.3e-47 193.0 112 80.4
MD12G1227500 Malus domestica HOM05D000604 ORTHO05D004512 1.7e-47 192.6 112 78.6
Peaxi162Scf00225g00622 Petunia axillaris HOM05D000604 ORTHO05D004512 1.7e-47 192.6 112 81.2
MSTRG.18261 Avicennia marina HOM05D000604 ORTHO05D004512 2.2e-47 192.2 112 80.4
Oeu052139.1 Olea europaea HOM05D000604 ORTHO05D004512 3.8e-47 191.4 112 81.2
Hund07022 Selenicereus undatus HOM05D000604 ORTHO05D004512 4.9e-47 191.0 112 82.1
Aqoxy1G02180 Aquilegia oxysepala HOM05D000604 ORTHO05D004512 6.4e-47 190.7 112 78.6
CAN.G134.221 Capsicum annuum HOM05D000604 ORTHO05D004512 6.4e-47 190.7 108 83.3
Oeu028231.1 Olea europaea HOM05D000604 ORTHO05D004512 8.4e-47 190.3 112 80.4
Hma1.2p1_0702F.1_g206100 Hydrangea macrophylla HOM05D000604 ORTHO05D004512 1.1e-46 189.9 114 78.9
Phvul.007G183500 Phaseolus vulgaris HOM05D000604 ORTHO05D004512 1.1e-46 189.9 112 77.7
Sc16g0008250 Simmondsia chinensis HOM05D000604 ORTHO05D004512 1.1e-46 189.9 112 80.4
Medtr5g055170 Medicago truncatula HOM05D000604 ORTHO05D004512 1.4e-46 189.5 112 78.6
VMungo0720G1625 Vigna mungo HOM05D000604 ORTHO05D004512 1.4e-46 189.5 112 77.7
TPR.G6694 Trifolium pratense HOM05D000604 ORTHO05D004512 1.9e-46 189.1 112 76.8
CANSAT01G1793 Cannabis sativa HOM05D000604 ORTHO05D004512 2.4e-46 188.7 112 76.8
CANSAT54G2755 Cannabis sativa HOM05D000604 ORTHO05D004512 2.4e-46 188.7 112 76.8
Ca_02808_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004512 2.4e-46 188.7 112 78.6
SalBow6G2614 Salvia bowleyana HOM05D000604 ORTHO05D004512 2.4e-46 188.7 111 78.4
Atru.chr12.650 Acer truncatum HOM05D000604 ORTHO05D004512 3.2e-46 188.3 112 76.8
Atru.chr12.677 Acer truncatum HOM05D000604 ORTHO05D004512 3.2e-46 188.3 112 76.8
Glyma.10G158100 Glycine max HOM05D000604 ORTHO05D004512 5.4e-46 187.6 112 76.8
Glyma.20G230500 Glycine max HOM05D000604 ORTHO05D004512 5.4e-46 187.6 112 76.8
Lj3g0003298 Lotus japonicus HOM05D000604 ORTHO05D004512 5.4e-46 187.6 112 76.8
Zm00001eb048550 Zea mays HOM05D000604 ORTHO05D004512 5.4e-46 187.6 111 78.4
MD04G1213300 Malus domestica HOM05D000604 ORTHO05D004512 7.1e-46 187.2 112 76.8
Psat2g182520 Pisum sativum HOM05D006321 ORTHO05D004512 7.1e-46 187.2 112 76.8
Zm00001eb307170 Zea mays HOM05D000604 ORTHO05D004512 7.1e-46 187.2 111 78.4
HanXRQChr15g0464271 Helianthus annuus HOM05D000604 ORTHO05D004512 9.3e-46 186.8 114 74.6
Lalb_Chr21g0310821 Lupinus albus HOM05D000604 ORTHO05D004512 9.3e-46 186.8 112 77.7
HPP92_017559 Vanilla planifolia HOM05D000604 ORTHO05D004512 9.3e-46 186.8 110 78.2
Aa31LG5G9440 Aethionema arabicum HOM05D000604 ORTHO05D004512 1.2e-45 186.4 112 76.8
CiPaw.02G127200 Carya illinoinensis HOM05D000604 ORTHO05D004512 1.2e-45 186.4 112 77.7
Oeu025244.1 Olea europaea HOM05D000604 ORTHO05D004512 1.2e-45 186.4 112 78.6
Os01g0377500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004512 1.2e-45 186.4 111 75.7
Cpa.g.sc81.66 Carica papaya HOM05D000604 ORTHO05D004512 1.6e-45 186.0 112 75.0
QL06p022999 Quercus lobata HOM05D000604 ORTHO05D004512 1.6e-45 186.0 112 76.8
QL11p023874 Quercus lobata HOM05D000604 ORTHO05D004512 1.6e-45 186.0 112 76.8
GSVIVG01020870001 Vitis vinifera HOM05D000604 ORTHO05D004512 1.6e-45 186.0 112 79.5
Medtr5g010140 Medicago truncatula HOM05D000604 ORTHO05D004512 2.1e-45 185.7 112 75.9
Prupe.6G333200 Prunus persica HOM05D000604 ORTHO05D004512 2.1e-45 185.7 112 75.9
RcHm_v2.0_Chr3g0453411 Rosa chinensis HOM05D000604 ORTHO05D004512 2.1e-45 185.7 112 75.0
Nitab4.5_0000245g0230 Nicotiana tabacum HOM05D000604 ORTHO05D004512 4.6e-45 184.5 128 71.9
CiPaw.01G204800 Carya illinoinensis HOM05D000604 ORTHO05D004512 7.9e-45 183.7 112 76.8
TWI38G0373 Tripterygium wilfordii HOM05D000604 ORTHO05D004512 1.0e-44 183.3 112 75.9
THA.LOC104826738 Tarenaya hassleriana HOM05D000604 ORTHO05D004512 1.3e-44 183.0 112 75.0
AT2G26430 Arabidopsis thaliana HOM05D000604 ORTHO05D004512 2.3e-44 182.2 112 73.2
Duzib128G0428 Durio zibethinus HOM05D000604 ORTHO05D004512 2.3e-44 182.2 112 75.0
AL4G19120 Arabidopsis lyrata HOM05D000604 ORTHO05D004512 3.0e-44 181.8 112 73.2
Carub.0004s0633 Capsella rubella HOM05D000604 ORTHO05D004512 3.0e-44 181.8 112 73.2
CARHR118360 Cardamine hirsuta HOM05D000604 ORTHO05D004512 3.0e-44 181.8 112 73.2
Manes.08G028200 Manihot esculenta HOM05D000604 ORTHO05D004512 3.0e-44 181.8 112 74.1
Sp1g23300 Schrenkiella parvula HOM05D000604 ORTHO05D004512 3.0e-44 181.8 112 74.1
Sp4g07260 Schrenkiella parvula HOM05D000604 ORTHO05D004512 3.0e-44 181.8 112 72.3
A07p12190 Brassica napus HOM05D000604 ORTHO05D004512 3.9e-44 181.4 112 73.2
C07p18150 Brassica napus HOM05D000604 ORTHO05D004512 3.9e-44 181.4 112 73.2
BolC7t42325H Brassica oleracea HOM05D000604 ORTHO05D004512 3.9e-44 181.4 112 73.2
BraA07t29003Z Brassica rapa HOM05D000604 ORTHO05D004512 3.9e-44 181.4 112 73.2
Thhalv10007728m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 3.9e-44 181.4 112 73.2
Ciclev10031535m.g Citrus clementina HOM05D000604 ORTHO05D004512 5.1e-44 181.0 112 74.1
Gohir.A01G133500 Gossypium hirsutum HOM05D000604 ORTHO05D004512 5.1e-44 181.0 112 74.1
Gohir.D01G117700 Gossypium hirsutum HOM05D000604 ORTHO05D004512 5.1e-44 181.0 112 74.1
Gorai.002G143200 Gossypium raimondii HOM05D000604 ORTHO05D004512 5.1e-44 181.0 112 74.1
Sed0027198 Sechium edule HOM05D000604 ORTHO05D004512 5.1e-44 181.0 112 75.0
unitig_750.g28505 Utricularia gibba HOM05D000604 ORTHO05D004512 6.6e-44 180.6 113 76.1
Haze_25104 Corylus avellana HOM05D000258 ORTHO05D000153 8.7e-44 180.3 112 75.9
Migut.N00466 Erythranthe guttata HOM05D000604 ORTHO05D004512 8.7e-44 180.3 112 75.9
FvH4_6g04870 Fragaria vesca HOM05D000604 ORTHO05D004512 8.7e-44 180.3 112 72.3
FAN09G4787 Fragaria x ananassa HOM05D000604 ORTHO05D004512 8.7e-44 180.3 112 72.3
FAN14G1660 Fragaria x ananassa HOM05D000604 ORTHO05D004512 8.7e-44 180.3 112 72.3
FAN14G4098 Fragaria x ananassa HOM05D000604 ORTHO05D004512 8.7e-44 180.3 112 72.3
PGR031G1961 Punica granatum HOM05D000604 ORTHO05D004512 1.1e-43 179.9 110 77.3
COL.COLO4_23726 Corchorus olitorius HOM05D000604 ORTHO05D004512 1.5e-43 179.5 111 74.8
Potri.008G043600 Populus trichocarpa HOM05D000604 ORTHO05D004512 1.5e-43 179.5 112 74.1
Thecc.10G069000 Theobroma cacao HOM05D000604 ORTHO05D004512 1.5e-43 179.5 112 73.2
FAN05G3414 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.9e-43 179.1 112 71.4
FAN05G3826 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.9e-43 179.1 112 71.4
Mapoly0037s0071 Marchantia polymorpha HOM05D000604 ORTHO05D004512 1.9e-43 179.1 111 75.7
Cfa002807 Carpinus fangiana HOM05D000604 ORTHO05D004512 3.3e-43 178.3 112 75.0
Eucgr.H04430 Eucalyptus grandis HOM05D000604 ORTHO05D004512 3.3e-43 178.3 112 75.9
QL07p023602 Quercus lobata HOM05D000604 ORTHO05D004512 3.3e-43 178.3 112 74.1
ClCG03G016990 Citrullus lanatus HOM05D000604 ORTHO05D004512 7.3e-43 177.2 112 73.2
CsaV3_1G038950 Cucumis sativus L. HOM05D000604 ORTHO05D004512 9.6e-43 176.8 112 73.2
SHI08941 Sapria himalayana HOM05D000604 ORTHO05D004512 4.8e-42 174.5 112 71.4
VMungo0720G1622 Vigna mungo HOM05D000604 ORTHO05D004512 1.1e-41 173.3 112 69.6
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 1.4e-41 172.9 111 76.6
Pp3c9_26180 Physcomitrium patens HOM05D000604 ORTHO05D004512 1.8e-41 172.6 114 72.8
Ca_14509_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004512 9.0e-41 170.2 141 61.7
Pp3c15_25980 Physcomitrium patens HOM05D000604 ORTHO05D004512 3.4e-40 168.3 114 71.1
Sabra08G0030100 Salix brachista HOM05D000604 ORTHO05D004512 9.9e-40 166.8 134 61.2
AagrBONN_evm.TU.Sc2ySwM_344.3972 Anthoceros agrestis HOM05D000604 ORTHO05D004512 1.3e-39 166.4 111 71.2
CBR_g41142 Chara braunii HOM05D000604 ORTHO05D004512 1.7e-39 166.0 114 71.1
Migut.K01229 Erythranthe guttata HOM05D000604 ORTHO05D004512 2.9e-39 165.2 96 81.2
Peaxi162Scf00132g00024 Petunia axillaris HOM05D000604 ORTHO05D004512 3.8e-39 164.9 112 68.8
Peaxi162Scf00690g00025 Petunia axillaris HOM05D003992 ORTHO05D004329 4.9e-39 164.5 112 68.8
Prupe.7G087700 Prunus persica HOM05D000604 ORTHO05D004512 4.9e-39 164.5 116 68.1
Thhalv10027406m.g Eutrema salsugineum HOM05D000604 ORTHO05D004512 8.4e-39 163.7 114 66.7
MBI18_g38867_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004512 2.4e-38 162.2 89 85.4
Peaxi162Scf00202g00034 Petunia axillaris HOM05D000604 ORTHO05D004512 5.5e-38 161.0 112 69.6
Actinidia19814 Actinidia chinensis HOM05D000604 ORTHO05D004512 9.3e-38 160.2 91 82.4
Lsat_1_v5_gn_0_34680 Lactuca sativa HOM05D000604 ORTHO05D004512 1.1e-35 153.3 111 61.3
Oeu026653.1 Olea europaea HOM05D000604 ORTHO05D004512 9.6e-35 150.2 88 80.7
Lsat_1_v5_gn_8_124580 Lactuca sativa HOM05D000604 ORTHO05D004512 4.0e-33 144.8 113 60.2
Lsat_1_v5_gn_8_124560 Lactuca sativa HOM05D000604 ORTHO05D004512 9.0e-33 143.7 113 59.3
Oeu025246.1 Olea europaea HOM05D000604 ORTHO05D004512 3.4e-32 141.7 90 74.4
Nitab4.5_0005181g0060 Nicotiana tabacum HOM05D000604 ORTHO05D004512 4.9e-31 137.9 111 61.3
SMO287G0022 Selaginella moellendorffii HOM05D000604 ORTHO05D004512 1.1e-30 136.7 122 59.8
PGSC0003DMG400003689 Solanum tuberosum HOM05D000604 ORTHO05D004512 7.1e-30 134.0 113 60.2
Psat2g184680 Pisum sativum HOM05D000604 ORTHO05D004512 7.9e-29 130.6 88 67.0
FAN14G1953 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.3e-28 129.8 112 57.1
MCO04G357 Micromonas commoda HOM05D000604 ORTHO05D004512 1.8e-28 129.4 112 51.8
Lj6A239T12 Lonicera japonica HOM05D000604 ORTHO05D004512 1.5e-27 126.3 68 86.8
AUR62036638 Chenopodium quinoa HOM05D000604 ORTHO05D004512 3.7e-26 121.7 70 82.9
CAN.G389.5 Capsicum annuum HOM05D000604 ORTHO05D004512 1.2e-24 116.7 80 70.0
Lj6C239T2 Lonicera japonica HOM05D000604 ORTHO05D004512 2.0e-24 115.9 66 81.8
QL01p038682 Quercus lobata HOM05D000604 ORTHO05D004512 3.8e-23 111.7 80 63.8
QL05p050082 Quercus lobata HOM05D000604 ORTHO05D004512 7.2e-22 107.5 75 68.0
SEGI_09045 Sequoiadendron giganteum HOM05D000604 ORTHO05D004512 1.2e-21 106.7 70 70.0
Cre07.g321650 Chlamydomonas reinhardtii HOM05D000604 ORTHO05D004512 1.5e-19 99.8 116 46.6
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 1.1e-17 93.6 90 53.3
GSVIVG01029422001 Vitis vinifera HOM05D000604 ORTHO05D004512 6.9e-17 90.9 60 70.0
SMO171G0100 Selaginella moellendorffii HOM05D000604 ORTHO05D004512 1.7e-15 86.3 111 44.1
Nitab4.5_0002186g0110 Nicotiana tabacum HOM05D000604 ORTHO05D004512 5.0e-15 84.7 79 53.2
EL10Ac4g09282 Beta vulgaris HOM05D000604 ORTHO05D004512 3.6e-13 78.6 93 49.5
Psat3g022480 Pisum sativum HOM05D000604 ORTHO05D004512 4.6e-13 78.2 48 75.0
FAN02G4461 Fragaria x ananassa HOM05D000604 ORTHO05D004512 1.5e-11 73.2 44 70.5
Sabra10G0168700 Salix brachista HOM05D000604 ORTHO05D004512 1.7e-10 69.7 112 37.5
Pp3c14_26890 Physcomitrium patens HOM05D000604 ORTHO05D004512 6.3e-10 67.8 97 41.2
SEGI_04759 Sequoiadendron giganteum HOM05D000604 ORTHO05D004512 9.1e-09 63.9 35 80.0
PRCOL_00003844 Prasinoderma coloniale HOM05D000604 ORTHO05D004512 2.6e-08 62.4 95 43.2
C05p25700 Brassica napus HOM05D000604 ORTHO05D004512 1.0e-07 60.5 112 33.9
Peaxi162Scf01056g00011 Petunia axillaris HOM05D000604 ORTHO05D004512 1.7e-07 59.7 50 50.0
Carub.0001s3305 Capsella rubella HOM05D000604 ORTHO05D000990 2.2e-07 59.3 107 29.9
MCO01G632 Micromonas commoda HOM05D000604 ORTHO05D000990 6.5e-07 57.8 107 31.8
Lj3g0011224 Lotus japonicus HOM05D000604 ORTHO05D000990 1.9e-06 56.2 113 28.3
Ah.04g152290 Amaranthus hybridus HOM05D000604 ORTHO05D000990 4.2e-06 55.1 101 29.7
AL1G50290 Arabidopsis lyrata HOM05D000604 ORTHO05D000990 7.2e-06 54.3 111 28.8
AUR62012067 Chenopodium quinoa HOM05D000604 ORTHO05D000990 7.2e-06 54.3 101 28.7
Ciclev10018136m.g Citrus clementina HOM05D000604 ORTHO05D000990 7.2e-06 54.3 101 27.7
arahy.Tifrunner.gnm1.ann1.LZ6UUP Arachis hypogaea HOM05D000604 ORTHO05D000990 9.4e-06 53.9 101 29.7
arahy.Tifrunner.gnm1.ann1.MF3YPB Arachis hypogaea HOM05D000604 ORTHO05D000990 9.4e-06 53.9 101 29.7
EL10Ac3g06948 Beta vulgaris HOM05D000604 ORTHO05D000990 9.4e-06 53.9 101 29.7
FvH4_4g33640 Fragaria vesca HOM05D000604 ORTHO05D000990 9.4e-06 53.9 118 33.9


User provided reference genes

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