Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 1.4e-198 696.0 343 100.0
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 2.4e-182 642.1 343 94.5
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 1.3e-122 443.7 343 66.2
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 2.8e-114 416.0 314 64.6
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 1.4e-113 413.7 318 65.1
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 1.8e-113 413.3 307 66.4
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 4.9e-111 405.2 330 64.5
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 7.1e-110 401.4 298 66.1
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 9.3e-110 401.0 255 74.9
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 2.7e-109 399.4 331 62.2
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 3.5e-109 399.1 299 66.6
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 3.3e-107 392.5 315 61.3
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 5.7e-107 391.7 315 62.5
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 2.8e-106 389.4 296 65.9
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 3.7e-106 389.0 327 61.5
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 4.8e-106 388.7 300 64.0
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 6.3e-106 388.3 342 59.6
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 6.3e-106 388.3 329 60.5
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 1.1e-105 387.5 277 67.9
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 1.4e-105 387.1 283 65.7
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 2.4e-105 386.3 315 62.9
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 5.3e-105 385.2 303 63.0
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 9.0e-105 384.4 281 65.5
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 2.0e-104 383.3 279 65.9
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 2.6e-104 382.9 341 57.8
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.6e-104 382.9 295 64.4
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 5.9e-104 381.7 275 65.1
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 5.9e-104 381.7 296 64.2
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 1.0e-103 380.9 340 59.1
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.3e-103 380.6 311 63.0
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 1.3e-103 380.6 303 64.0
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.7e-103 380.2 332 60.2
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 6.5e-103 378.3 295 64.4
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.1e-102 377.5 303 63.7
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 3.2e-102 375.9 272 66.5
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 3.2e-102 375.9 338 58.9
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 5.5e-102 375.2 300 63.3
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 7.2e-102 374.8 310 61.6
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 9.4e-102 374.4 295 62.4
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 1.6e-101 373.6 263 67.3
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 6.1e-101 371.7 288 65.6
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 7.9e-101 371.3 295 65.1
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 7.9e-101 371.3 295 65.1
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 7.9e-101 371.3 297 64.6
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 1.0e-100 370.9 289 65.4
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 1.0e-100 370.9 308 61.7
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 1.4e-100 370.5 295 65.1
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 3.0e-100 369.4 282 65.6
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 3.0e-100 369.4 322 58.4
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 1.1e-99 367.5 349 57.0
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 1.1e-99 367.5 330 58.2
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 1.5e-99 367.1 288 64.2
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 1.5e-99 367.1 288 64.9
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 3.3e-99 365.9 288 64.2
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 3.3e-99 365.9 288 64.2
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 4.3e-99 365.5 269 66.5
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 7.4e-99 364.8 269 66.5
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 7.4e-99 364.8 319 58.9
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 7.4e-99 364.8 325 60.0
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 7.4e-99 364.8 282 64.5
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 7.4e-99 364.8 282 64.5
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 1.3e-98 364.0 257 67.3
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 1.7e-98 363.6 282 65.2
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 2.8e-98 362.8 282 65.2
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 2.8e-98 362.8 305 60.0
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 1.8e-97 360.1 311 58.8
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 3.1e-97 359.4 326 58.3
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 4.1e-97 359.0 276 65.6
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 5.3e-97 358.6 261 65.5
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 9.1e-97 357.8 320 59.4
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 9.1e-97 357.8 270 65.2
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 2.0e-96 356.7 271 62.4
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 4.5e-96 355.5 340 57.1
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 5.9e-96 355.1 280 61.8
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 7.7e-96 354.8 296 61.8
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 1.0e-95 354.4 261 64.8
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 1.7e-95 353.6 323 55.4
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 2.2e-95 353.2 277 62.5
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 6.5e-95 351.7 335 56.4
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 1.2e-93 347.4 243 67.1
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 3.6e-93 345.9 286 59.1
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 4.7e-93 345.5 275 61.5
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 6.1e-93 345.1 290 58.6
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 1.8e-92 343.6 299 60.2
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 3.9e-92 342.4 335 55.2
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 1.5e-91 340.5 329 54.1
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 2.6e-91 339.7 329 53.8
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 3.3e-91 339.3 416 47.1
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 6.3e-90 335.1 299 58.9
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 3.1e-89 332.8 224 70.5
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 1.2e-88 330.9 320 53.1
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 5.9e-88 328.6 243 63.0
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.7e-87 327.0 338 55.6
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 2.7e-85 319.7 293 57.0
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 2.6e-83 313.2 259 60.2
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 3.3e-83 312.8 407 44.7
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 1.3e-79 300.8 256 56.6
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 4.2e-78 295.8 245 60.0
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 5.5e-70 268.9 254 50.8
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 2.0e-67 260.4 245 56.7
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 1.8e-65 253.8 160 73.8
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 2.4e-65 253.4 306 45.4
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 8.6e-63 245.0 257 49.0
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 1.6e-61 240.7 317 42.3
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 8.0e-61 238.4 243 50.2
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 1.0e-60 238.0 274 50.7
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 2.8e-58 229.9 295 42.7
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 1.8e-57 227.3 247 45.7
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 1.9e-49 200.7 130 70.0
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 5.2e-44 182.6 199 47.2
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 2.1e-37 160.6 156 55.8
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 2.3e-36 157.1 165 54.5
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 2.2e-34 150.6 165 52.7
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 7.1e-33 145.6 91 73.6
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 2.7e-32 143.7 149 53.0
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.5e-30 137.9 114 62.3
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 1.2e-29 134.8 149 43.6
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 4.7e-29 132.9 124 58.1
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 1.5e-27 127.9 75 73.3
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 7.6e-27 125.6 106 54.7
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 2.9e-26 123.6 230 37.8
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 6.4e-26 122.5 119 50.4
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 2.7e-24 117.1 141 50.4
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 5.1e-23 112.8 74 70.3
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 1.6e-21 107.8 255 30.2
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 4.0e-20 103.2 108 44.4
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 9.9e-19 98.6 88 53.4
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 2.9e-18 97.1 102 51.0
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 3.8e-18 96.7 102 50.0
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 4.2e-17 93.2 102 50.0
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 1.2e-16 91.7 286 26.6
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 3.5e-16 90.1 189 32.3
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 4.6e-16 89.7 76 56.6
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 3.9e-15 86.7 62 66.1
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 5.1e-15 86.3 61 63.9
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 9.6e-14 82.0 239 30.1
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 1.1e-12 78.6 138 35.5
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 9.0e-12 75.5 316 27.8
Eucgr.K01500 Eucalyptus grandis HOM05D006013 ORTHO05D007383 2.2e-10 70.9 303 24.8
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 2.9e-10 70.5 126 42.9
Gohir.A11G235800 Gossypium hirsutum HOM05D006013 ORTHO05D007383 3.8e-10 70.1 335 26.3
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 4.9e-10 69.7 248 28.6
Pp3c3_4160 Physcomitrium patens HOM05D006013 ORTHO05D007383 1.4e-09 68.2 227 26.9
Potri.019G035200 Populus trichocarpa HOM05D006013 ORTHO05D007383 1.9e-09 67.8 317 26.5
Cre02.g098250 Chlamydomonas reinhardtii HOM05D006013 ORTHO05D007383 2.4e-09 67.4 250 25.6
arahy.Tifrunner.gnm1.ann1.779YCA Arachis hypogaea HOM05D006013 ORTHO05D007383 7.1e-09 65.9 297 25.6
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 1.2e-08 65.1 333 24.9
THA.LOC104820775 Tarenaya hassleriana HOM05D006013 ORTHO05D007383 1.2e-08 65.1 249 26.5
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 1.6e-08 64.7 332 24.1
Gohir.D11G246700 Gossypium hirsutum HOM05D006013 ORTHO05D007383 2.1e-08 64.3 331 25.7
TPR.G5910 Trifolium pratense HOM05D006013 ORTHO05D007383 2.1e-08 64.3 334 25.4
MBI01_g13088_MAGBIO Magnolia biondii HOM05D006013 ORTHO05D007383 2.7e-08 63.9 253 26.1
Potri.013G057700 Populus trichocarpa HOM05D006013 ORTHO05D007383 2.7e-08 63.9 255 26.7
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 3.5e-08 63.5 246 27.6
FvH4_6g36141 Fragaria vesca HOM05D002283 ORTHO05D005725 3.5e-08 63.5 86 47.7
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 7.9e-08 62.4 230 25.2
CBR_g45943 Chara braunii HOM05D006013 ORTHO05D007383 1.8e-07 61.2 281 22.1
Duzib106G1826 Durio zibethinus HOM05D006013 ORTHO05D007383 2.3e-07 60.8 245 25.7
Peaxi162Scf00463g00021 Petunia axillaris HOM05D006013 ORTHO05D007383 3.9e-07 60.1 320 23.4
COL.COLO4_36081 Corchorus olitorius HOM05D006013 ORTHO05D007383 5.1e-07 59.7 259 25.5
Duzib177G0997 Durio zibethinus HOM05D006013 ORTHO05D007383 5.1e-07 59.7 316 25.0
Nitab4.5_0000626g0030 Nicotiana tabacum HOM05D006013 ORTHO05D007383 5.1e-07 59.7 319 23.5
Thecc.05G250300 Theobroma cacao HOM05D006013 ORTHO05D007383 6.7e-07 59.3 255 26.3
Nitab4.5_0000394g0050 Nicotiana tabacum HOM05D006013 ORTHO05D007383 8.7e-07 58.9 262 24.8
FAN14G3055 Fragaria x ananassa HOM05D002283 ORTHO05D005725 2.5e-06 57.4 64 48.4
CANSAT21G1266 Cannabis sativa HOM05D002525 ORTHO05D002727 3.3e-06 57.0 111 33.3
HanXRQChr03g0090471 Helianthus annuus HOM05D006013 ORTHO05D007383 3.3e-06 57.0 249 23.7
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 4.3e-06 56.6 250 25.6
QL07p018334 Quercus lobata HOM05D006013 ORTHO05D007383 9.6e-06 55.5 234 25.2


User provided reference genes

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