Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C215G0 Lonicera japonica HOM05D000991 ORTHO05D000848 1.0e-79 300.1 155 100.0
Lj6C152G1 Lonicera japonica HOM05D000991 ORTHO05D000848 4.6e-32 141.7 152 59.9
Lju124C2T2 Lonicera japonica HOM05D000991 ORTHO05D000848 7.9e-32 141.0 152 59.2
Lj6C146T1 Lonicera japonica HOM05D000991 ORTHO05D000848 2.0e-27 126.3 141 58.2
Lj6P136T4 Lonicera japonica HOM05D000991 ORTHO05D000848 3.4e-27 125.6 143 56.6
Lj6C213T0 Lonicera japonica HOM05D000991 ORTHO05D000848 3.5e-24 115.5 119 60.5
Lj6A139T9 Lonicera japonica HOM05D000991 ORTHO05D000848 3.9e-23 112.1 152 52.0
Lj6A143T5 Lonicera japonica HOM05D000991 ORTHO05D000848 3.3e-22 109.0 152 52.0
Lj6P214T4 Lonicera japonica HOM05D000991 ORTHO05D000848 9.6e-22 107.5 103 61.2
Lju4271C0G0 Lonicera japonica HOM05D000991 ORTHO05D000848 9.6e-22 107.5 123 54.5
Lj5C77T3 Lonicera japonica HOM05D000991 ORTHO05D000848 5.3e-20 101.7 153 49.0
Lju124C1T4 Lonicera japonica HOM05D000991 ORTHO05D000848 1.4e-17 93.6 127 52.0
Lj6P144T4 Lonicera japonica HOM05D000991 ORTHO05D000848 5.5e-17 91.7 118 54.2
Lj6P213T8 Lonicera japonica HOM05D000991 ORTHO05D000848 9.3e-17 90.9 118 54.2
Prupe.3G093800 Prunus persica HOM05D000991 ORTHO05D000848 9.3e-17 90.9 139 41.0
Lj6P137T3 Lonicera japonica HOM05D000991 ORTHO05D000848 1.6e-16 90.1 118 54.2
MD17G1218300 Malus domestica HOM05D000991 ORTHO05D000848 6.1e-16 88.2 153 43.8
Lju124C0T0 Lonicera japonica HOM05D000991 ORTHO05D000848 7.9e-16 87.8 132 44.7
TAR633G1260 Trochodendron aralioides HOM05D000991 ORTHO05D000848 1.3e-15 87.0 142 40.1
FAN05G2229 Fragaria x ananassa HOM05D000991 ORTHO05D000848 1.8e-15 86.7 136 42.6
FAN09G1143 Fragaria x ananassa HOM05D000991 ORTHO05D000848 1.8e-15 86.7 136 42.6
RcHm_v2.0_Chr2g0134241 Rosa chinensis HOM05D000991 ORTHO05D000848 1.8e-15 86.7 129 43.4
TAR625G0469 Trochodendron aralioides HOM05D000991 ORTHO05D000848 1.8e-15 86.7 147 40.1
RcHm_v2.0_Chr2g0134191 Rosa chinensis HOM05D000991 ORTHO05D000848 2.3e-15 86.3 129 42.6
TAR625G0911 Trochodendron aralioides HOM05D000991 ORTHO05D000848 3.0e-15 85.9 142 39.4
Lj6P158T6 Lonicera japonica HOM05D000991 ORTHO05D000848 3.9e-15 85.5 118 51.7
TPR.G10856 Trifolium pratense HOM05D000991 ORTHO05D000848 3.9e-15 85.5 133 46.6
FvH4_6g29070 Fragaria vesca HOM05D000991 ORTHO05D000848 5.1e-15 85.1 136 40.4
FAN02G1948 Fragaria x ananassa HOM05D000991 ORTHO05D000848 5.1e-15 85.1 136 41.9
FAN14G4356 Fragaria x ananassa HOM05D000991 ORTHO05D000848 5.1e-15 85.1 136 40.4
Medtr4g009340 Medicago truncatula HOM05D000991 ORTHO05D000848 8.7e-15 84.3 146 43.2
MD17G1218200 Malus domestica HOM05D000991 ORTHO05D000848 2.5e-14 82.8 152 39.5
Dinv38155 Davidia involucrata HOM05D000991 ORTHO05D000848 4.3e-14 82.0 141 42.6
Glyma.07G027500 Glycine max HOM05D000991 ORTHO05D000848 5.7e-14 81.6 149 39.6
Nitab4.5_0004217g0080 Nicotiana tabacum HOM05D000991 ORTHO05D000848 9.7e-14 80.9 127 40.2
Dinv38156 Davidia involucrata HOM05D000991 ORTHO05D000848 1.3e-13 80.5 138 42.0
Nitab4.5_0002322g0170 Nicotiana tabacum HOM05D000991 ORTHO05D000848 1.6e-13 80.1 127 40.2
Nn8g39678 Nelumbo nucifera HOM05D000991 ORTHO05D000848 2.2e-13 79.7 139 40.3
TPR.G38595 Trifolium pratense HOM05D000991 ORTHO05D000848 3.7e-13 79.0 140 42.1
Duzib192G0345 Durio zibethinus HOM05D000991 ORTHO05D000848 4.8e-13 78.6 146 37.7
Solyc03g117260.2 Solanum lycopersicum HOM05D000991 ORTHO05D000848 8.2e-13 77.8 127 40.9
RcHm_v2.0_Chr6g0251731 Rosa chinensis HOM05D000991 ORTHO05D000848 1.1e-12 77.4 137 41.6
MD17G1218100 Malus domestica HOM05D000991 ORTHO05D000848 1.4e-12 77.0 152 37.5
Phvul.010G158100 Phaseolus vulgaris HOM05D000991 ORTHO05D000848 2.4e-12 76.3 133 38.3
Duzib235G1339 Durio zibethinus HOM05D000991 ORTHO05D000848 3.1e-12 75.9 140 39.3
Glyma.08G215200 Glycine max HOM05D000991 ORTHO05D000848 3.1e-12 75.9 139 38.8
COL.COLO4_11834 Corchorus olitorius HOM05D000991 ORTHO05D000848 4.1e-12 75.5 141 39.0
Medtr7g017620 Medicago truncatula HOM05D000991 ORTHO05D000848 6.9e-12 74.7 147 38.1
TPR.G3236 Trifolium pratense HOM05D000991 ORTHO05D000848 6.9e-12 74.7 151 37.7
arahy.Tifrunner.gnm1.ann1.ALB3WU Arachis hypogaea HOM05D000991 ORTHO05D000848 1.5e-11 73.6 143 37.8
CANSAT56G3926 Cannabis sativa HOM05D000991 ORTHO05D000848 1.5e-11 73.6 130 39.2
Dinv38153 Davidia involucrata HOM05D000991 ORTHO05D000848 1.5e-11 73.6 142 36.6
Thecc.06G035400 Theobroma cacao HOM05D000991 ORTHO05D000848 2.0e-11 73.2 153 39.2
arahy.Tifrunner.gnm1.ann1.DWFH4A Arachis hypogaea HOM05D000991 ORTHO05D000848 2.6e-11 72.8 143 37.1
Phvul.008G011100 Phaseolus vulgaris HOM05D000991 ORTHO05D000848 2.6e-11 72.8 149 39.6
Psat7g258320 Pisum sativum HOM05D000991 ORTHO05D000848 2.6e-11 72.8 140 40.0
CSS0019868 Camellia sinensis var. sinensis HOM05D000991 ORTHO05D000848 3.4e-11 72.4 131 42.7
Dinv23319 Davidia involucrata HOM05D000991 ORTHO05D000848 3.4e-11 72.4 148 38.5
Thecc.06G035100 Theobroma cacao HOM05D000991 ORTHO05D000848 3.4e-11 72.4 150 40.0
Thecc.06G035300 Theobroma cacao HOM05D000991 ORTHO05D000848 3.4e-11 72.4 131 38.2
VMungo0331G2052 Vigna mungo HOM05D000991 ORTHO05D000848 3.4e-11 72.4 141 37.6
Lj9A496T71 Lonicera japonica HOM05D000991 ORTHO05D000848 4.5e-11 72.0 152 36.2
Phvul.008G024200 Phaseolus vulgaris HOM05D000991 ORTHO05D000848 4.5e-11 72.0 149 38.9
QL05p033307 Quercus lobata HOM05D000991 ORTHO05D000848 4.5e-11 72.0 153 37.9
CiPaw.02G159600 Carya illinoinensis HOM05D000991 ORTHO05D000848 5.9e-11 71.6 144 40.3
Glyma.18G276700 Glycine max HOM05D000991 ORTHO05D000848 5.9e-11 71.6 153 35.3
Psat3g194400 Pisum sativum HOM05D000991 ORTHO05D000848 5.9e-11 71.6 150 36.7
Dinv38154 Davidia involucrata HOM05D000991 ORTHO05D000848 7.7e-11 71.2 146 39.0
Lj6P140T6 Lonicera japonica HOM05D000991 ORTHO05D000848 7.7e-11 71.2 75 64.0
Aqoxy7G03562 Aquilegia oxysepala HOM05D000991 ORTHO05D000848 1.0e-10 70.9 160 36.2
Psat7g258360 Pisum sativum HOM05D000991 ORTHO05D000848 1.0e-10 70.9 156 39.1
vmacro19030 Vaccinium macrocarpon HOM05D000991 ORTHO05D000848 1.0e-10 70.9 153 39.9
VMungo1383G3427 Vigna mungo HOM05D000991 ORTHO05D000848 1.0e-10 70.9 151 38.4
Cfa001920 Carpinus fangiana HOM05D000991 ORTHO05D000848 2.9e-10 69.3 148 33.1
Nitab4.5_0000373g0220 Nicotiana tabacum HOM05D000991 ORTHO05D000848 2.9e-10 69.3 133 36.1
Nitab4.5_0000373g0250 Nicotiana tabacum HOM05D000991 ORTHO05D000848 2.9e-10 69.3 126 38.9
GSVIVG01027389001 Vitis vinifera HOM05D000991 ORTHO05D000848 2.9e-10 69.3 141 35.5
CSS0048892 Camellia sinensis var. sinensis HOM05D000991 ORTHO05D000848 3.8e-10 68.9 153 39.9
Ciclev10027367m.g Citrus clementina HOM05D000991 ORTHO05D000848 3.8e-10 68.9 135 36.3
Ciclev10027562m.g Citrus clementina HOM05D000991 ORTHO05D000848 3.8e-10 68.9 151 36.4
Lalb_Chr04g0258311 Lupinus albus HOM05D000991 ORTHO05D000848 3.8e-10 68.9 149 34.9
Manes.11G062600 Manihot esculenta HOM05D000991 ORTHO05D000848 3.8e-10 68.9 150 33.3
Peaxi162Scf00332g10028 Petunia axillaris HOM05D000991 ORTHO05D000848 3.8e-10 68.9 130 37.7
PGR102G1046 Punica granatum HOM05D000991 ORTHO05D000848 3.8e-10 68.9 160 35.0
Rhsim08G0209500 Rhododendron simsii HOM05D000991 ORTHO05D000848 3.8e-10 68.9 155 36.1
MELO3C023449.2 Cucumis melo HOM05D000991 ORTHO05D000848 5.0e-10 68.6 125 41.6
Eucgr.F03930 Eucalyptus grandis HOM05D000991 ORTHO05D000848 6.5e-10 68.2 127 38.6
Medtr4g009590 Medicago truncatula HOM05D000991 ORTHO05D000848 6.5e-10 68.2 145 37.2
Medtr4g009620 Medicago truncatula HOM05D000991 ORTHO05D000848 6.5e-10 68.2 147 36.7
Peaxi162Scf00207g00537 Petunia axillaris HOM05D000991 ORTHO05D000848 6.5e-10 68.2 128 36.7
CSS0006522 Camellia sinensis var. sinensis HOM05D000991 ORTHO05D000848 8.5e-10 67.8 155 35.5
CANSAT56G2052 Cannabis sativa HOM05D000991 ORTHO05D000848 1.1e-09 67.4 155 36.1
Eucgr.F03929 Eucalyptus grandis HOM05D000991 ORTHO05D000848 1.1e-09 67.4 144 35.4
TWI18G0971 Tripterygium wilfordii HOM05D000991 ORTHO05D000848 1.1e-09 67.4 131 38.9
GSVIVG01017510001 Vitis vinifera HOM05D000991 ORTHO05D000848 1.1e-09 67.4 139 38.1
Lj6P331T56 Lonicera japonica HOM05D000991 ORTHO05D000848 1.4e-09 67.0 143 35.7
CSS0027718 Camellia sinensis var. sinensis HOM05D000991 ORTHO05D000848 1.9e-09 66.6 155 34.8
vmacro06414 Vaccinium macrocarpon HOM05D000991 ORTHO05D000848 1.9e-09 66.6 133 38.3
COL.COLO4_11835 Corchorus olitorius HOM05D000991 ORTHO05D000848 3.2e-09 65.9 140 35.7
Eucgr.F03927 Eucalyptus grandis HOM05D000991 ORTHO05D000848 3.2e-09 65.9 132 36.4
TWI18G0881 Tripterygium wilfordii HOM05D000991 ORTHO05D000848 3.2e-09 65.9 144 37.5
CSS0004949 Camellia sinensis var. sinensis HOM05D000991 ORTHO05D000848 4.2e-09 65.5 155 38.1
CSS0033221 Camellia sinensis var. sinensis HOM05D000991 ORTHO05D000848 4.2e-09 65.5 155 38.1
Lj9C496T17 Lonicera japonica HOM05D000991 ORTHO05D000848 4.2e-09 65.5 152 35.5
Lj1g0000897 Lotus japonicus HOM05D000991 ORTHO05D000848 4.2e-09 65.5 151 37.1
Potri.001G205100 Populus trichocarpa HOM05D000991 ORTHO05D000848 4.2e-09 65.5 146 37.0
Ciclev10027406m.g Citrus clementina HOM05D000991 ORTHO05D000848 5.5e-09 65.1 148 36.5
MELO3C023448.2 Cucumis melo HOM05D000991 ORTHO05D000848 5.5e-09 65.1 150 33.3
Ciclev10027595m.g Citrus clementina HOM05D000991 ORTHO05D000848 9.4e-09 64.3 151 36.4
Potri.009G085300 Populus trichocarpa HOM05D000991 ORTHO05D000848 9.4e-09 64.3 158 30.4
RcHm_v2.0_Chr5g0045921 Rosa chinensis HOM05D000991 ORTHO05D000848 9.4e-09 64.3 130 38.5
Haze_16623 Corylus avellana HOM05D000991 ORTHO05D000848 1.2e-08 63.9 139 36.0
CsaV3_7G032080 Cucumis sativus L. HOM05D000991 ORTHO05D000848 1.2e-08 63.9 125 38.4
Lj6P149T4 Lonicera japonica HOM05D000991 ORTHO05D000848 1.2e-08 63.9 92 47.8
Lj6P322T12 Lonicera japonica HOM05D000991 ORTHO05D000848 1.2e-08 63.9 138 34.8
TPR.G38643 Trifolium pratense HOM05D000991 ORTHO05D000848 1.2e-08 63.9 155 37.4
Ciclev10026970m.g Citrus clementina HOM05D000991 ORTHO05D000848 1.6e-08 63.5 142 36.6
Gohir.D05G122400 Gossypium hirsutum HOM05D000991 ORTHO05D000848 1.6e-08 63.5 133 35.3
Gorai.009G125900 Gossypium raimondii HOM05D000991 ORTHO05D000848 1.6e-08 63.5 133 35.3
Sabra01G0158400 Salix brachista HOM05D000991 ORTHO05D000848 1.6e-08 63.5 156 36.5
TWI18G0615 Tripterygium wilfordii HOM05D000991 ORTHO05D000848 1.6e-08 63.5 148 33.8
CSS0020908 Camellia sinensis var. sinensis HOM05D000991 ORTHO05D000848 2.1e-08 63.2 155 37.4
CANSAT56G0148 Cannabis sativa HOM05D000991 ORTHO05D000848 2.1e-08 63.2 121 38.0
Cfa001919 Carpinus fangiana HOM05D000991 ORTHO05D000848 2.1e-08 63.2 140 35.0
Lj6P330T10 Lonicera japonica HOM05D000991 ORTHO05D000848 2.1e-08 63.2 143 35.0
Nn8g39677 Nelumbo nucifera HOM05D000991 ORTHO05D000848 2.7e-08 62.8 137 34.3
Potri.003G024100 Populus trichocarpa HOM05D000991 ORTHO05D000848 2.7e-08 62.8 148 37.2
Sed0016415 Sechium edule HOM05D000991 ORTHO05D000848 2.7e-08 62.8 122 36.9
Ah.13g075080 Amaranthus hybridus HOM05D000991 ORTHO05D000848 4.6e-08 62.0 146 41.1
Nn8g39679 Nelumbo nucifera HOM05D000991 ORTHO05D000848 7.9e-08 61.2 130 38.5
Ca_06962_v3 Cicer arietinum L. HOM05D000991 ORTHO05D000848 1.0e-07 60.8 105 37.1
MBI14_g07749_MAGBIO Magnolia biondii HOM05D000991 ORTHO05D000848 1.4e-07 60.5 157 33.1
PGSC0003DMG400028525 Solanum tuberosum HOM05D000991 ORTHO05D000848 1.4e-07 60.5 126 34.9
Ciclev10027364m.g Citrus clementina HOM05D000991 ORTHO05D000848 1.8e-07 60.1 150 36.7
Gohir.A05G121400 Gossypium hirsutum HOM05D000991 ORTHO05D000848 1.8e-07 60.1 133 35.3
Manes.04G106700 Manihot esculenta HOM05D000991 ORTHO05D000848 1.8e-07 60.1 148 36.5
Actinidia25435 Actinidia chinensis HOM05D000991 ORTHO05D000848 2.3e-07 59.7 112 40.2
MBI14_g07748_MAGBIO Magnolia biondii HOM05D000991 ORTHO05D000848 2.3e-07 59.7 120 36.7
Cc04_g04770 Coffea canephora HOM05D000991 ORTHO05D000848 3.0e-07 59.3 147 36.7
Migut.I00731 Erythranthe guttata HOM05D000991 ORTHO05D000848 3.9e-07 58.9 156 32.1
CsaV3_7G032110 Cucumis sativus L. HOM05D000991 ORTHO05D000848 5.1e-07 58.5 150 35.3
Lju220A0T56 Lonicera japonica HOM05D000991 ORTHO05D000848 5.1e-07 58.5 121 37.2
Oeu044528.1 Olea europaea HOM05D000991 ORTHO05D000848 5.1e-07 58.5 131 35.1
THA.LOC104812455 Tarenaya hassleriana HOM05D000991 ORTHO05D000848 5.1e-07 58.5 95 43.2
GSVIVG01016554001 Vitis vinifera HOM05D000991 ORTHO05D000848 5.1e-07 58.5 99 40.4
Atru.chr2.1902 Acer truncatum HOM05D000991 ORTHO05D000848 6.7e-07 58.2 152 35.5
Cc04_g04760 Coffea canephora HOM05D000991 ORTHO05D000848 6.7e-07 58.2 151 34.4
SHI11272 Sapria himalayana HOM05D000991 ORTHO05D000848 8.8e-07 57.8 103 38.8
Solyc06g068340.3 Solanum lycopersicum HOM05D000991 ORTHO05D000848 1.1e-06 57.4 131 32.1
TWI18G1334 Tripterygium wilfordii HOM05D000991 ORTHO05D000848 1.1e-06 57.4 152 32.9
Lj3g0007897 Lotus japonicus HOM05D000991 ORTHO05D000848 1.5e-06 57.0 150 32.0
AT3G02645 Arabidopsis thaliana HOM05D000991 ORTHO05D000848 2.0e-06 56.6 98 36.7
Ciclev10027572m.g Citrus clementina HOM05D000991 ORTHO05D000848 2.0e-06 56.6 149 34.9
Thhalv10022378m.g Eutrema salsugineum HOM05D000991 ORTHO05D000848 2.0e-06 56.6 163 31.3
RcHm_v2.0_Chr6g0251751 Rosa chinensis HOM05D000991 ORTHO05D000848 2.0e-06 56.6 117 40.2
TAR625G0859 Trochodendron aralioides HOM05D000991 ORTHO05D000848 2.0e-06 56.6 140 35.0
DCAR_016282 Daucus carota HOM05D000991 ORTHO05D000848 2.5e-06 56.2 141 31.9
Oeu026255.1 Olea europaea HOM05D000991 ORTHO05D000848 2.5e-06 56.2 135 35.6
Potri.017G062900 Populus trichocarpa HOM05D000991 ORTHO05D000848 2.5e-06 56.2 139 34.5
Sabra17G0056600 Salix brachista HOM05D000991 ORTHO05D000848 2.5e-06 56.2 149 31.5
Oeu056085.1 Olea europaea HOM05D000991 ORTHO05D000848 3.3e-06 55.8 132 34.1
Potri.001G337900 Populus trichocarpa HOM05D000991 ORTHO05D000848 3.3e-06 55.8 154 34.4
MSTRG.11165 Avicennia marina HOM05D000991 ORTHO05D000848 4.3e-06 55.5 147 31.3
Lj5C77T13 Lonicera japonica HOM05D000991 ORTHO05D000848 4.3e-06 55.5 149 33.6
Actinidia21921 Actinidia chinensis HOM05D000991 ORTHO05D000848 5.7e-06 55.1 119 39.5
BNapus_Darmor_BZH_scaffold_122p00140 Brassica napus HOM05D000991 ORTHO05D000848 5.7e-06 55.1 147 32.0
BolC1t05889H Brassica oleracea HOM05D000991 ORTHO05D000848 5.7e-06 55.1 144 30.6
Ciclev10027162m.g Citrus clementina HOM05D000991 ORTHO05D000848 5.7e-06 55.1 146 31.5
COL.COLO4_11836 Corchorus olitorius HOM05D000991 ORTHO05D000848 5.7e-06 55.1 140 35.7
HanXRQChr16g0499861 Helianthus annuus HOM05D000991 ORTHO05D000848 5.7e-06 55.1 140 34.3
Sabra03G0152100 Salix brachista HOM05D000991 ORTHO05D000848 5.7e-06 55.1 149 31.5
TWI18G0392 Tripterygium wilfordii HOM05D000991 ORTHO05D000848 5.7e-06 55.1 146 34.2
AUR62035902 Chenopodium quinoa HOM05D006620 ORTHO05D008921 7.4e-06 54.7 141 36.9
AL3G12020 Arabidopsis lyrata HOM05D000991 ORTHO05D000848 9.7e-06 54.3 98 35.7
Lsat_1_v5_gn_4_86161 Lactuca sativa HOM05D000991 ORTHO05D000848 9.7e-06 54.3 134 33.6


User provided reference genes

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