Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C173T11 Lonicera japonica HOM05D007453 ORTHO05D009223 9.7e-60 233.4 129 100.0
Dinv24949 Davidia involucrata HOM05D007453 ORTHO05D009223 4.1e-18 95.1 87 54.0
ECA246G4987 Erigeron canadensis HOM05D007453 ORTHO05D009223 3.0e-16 89.0 85 51.8
Thecc.02G232500 Theobroma cacao HOM05D007453 ORTHO05D009223 1.9e-15 86.3 89 52.8
Actinidia08212 Actinidia chinensis HOM05D007453 ORTHO05D009223 3.3e-15 85.5 88 52.3
Cfa009043 Carpinus fangiana HOM05D007453 ORTHO05D009223 4.3e-15 85.1 90 48.9
HanXRQChr17g0544601 Helianthus annuus HOM05D007453 ORTHO05D009223 4.3e-15 85.1 87 55.2
COL.COLO4_36183 Corchorus olitorius HOM05D007453 ORTHO05D009223 9.5e-15 84.0 90 53.3
Cc11_g13560 Coffea canephora HOM05D007453 ORTHO05D009223 1.2e-14 83.6 100 50.0
Haze_12073 Corylus avellana HOM05D007453 ORTHO05D009223 1.2e-14 83.6 90 48.9
Gorai.009G347100 Gossypium raimondii HOM05D007453 ORTHO05D009223 1.2e-14 83.6 89 51.7
Actinidia19855 Actinidia chinensis HOM05D007453 ORTHO05D009223 2.1e-14 82.8 85 50.6
Glyma.02G022351 Glycine max HOM05D007453 ORTHO05D009223 2.1e-14 82.8 85 49.4
Gohir.A05G321200 Gossypium hirsutum HOM05D007453 ORTHO05D009223 2.1e-14 82.8 89 50.6
Gohir.D05G323400 Gossypium hirsutum HOM05D007453 ORTHO05D009223 2.1e-14 82.8 89 50.6
QL03p065949 Quercus lobata HOM05D007453 ORTHO05D009223 2.1e-14 82.8 89 50.6
Sed0013591 Sechium edule HOM05D007453 ORTHO05D009223 3.6e-14 82.0 88 53.4
Peaxi162Scf00209g00516 Petunia axillaris HOM05D007453 ORTHO05D009223 4.7e-14 81.6 88 48.9
Potri.010G034500 Populus trichocarpa HOM05D007453 ORTHO05D009223 6.2e-14 81.3 93 49.5
Manes.05G095900 Manihot esculenta HOM05D007453 ORTHO05D009223 1.1e-13 80.5 87 51.7
SalBow8G2121 Salvia bowleyana HOM05D007453 ORTHO05D009223 1.1e-13 80.5 96 47.9
vmacro16323 Vaccinium macrocarpon HOM05D007453 ORTHO05D009223 1.1e-13 80.5 91 50.5
MSTRG.13399 Avicennia marina HOM05D007453 ORTHO05D009223 1.4e-13 80.1 89 50.6
Phvul.002G067300 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 1.4e-13 80.1 85 48.2
Rhsim12G0129600 Rhododendron simsii HOM05D007453 ORTHO05D009223 2.3e-13 79.3 91 47.3
DCAR_031058 Daucus carota HOM05D007453 ORTHO05D009223 3.1e-13 79.0 88 55.7
arahy.Tifrunner.gnm1.ann1.QA8CWD Arachis hypogaea HOM05D007453 ORTHO05D009223 4.0e-13 78.6 86 50.0
Lj2g0026857 Lotus japonicus HOM05D007453 ORTHO05D009223 4.0e-13 78.6 85 47.1
CsaV3_5G032280 Cucumis sativus L. HOM05D007453 ORTHO05D009223 5.2e-13 78.2 88 52.3
Ciclev10032837m.g Citrus clementina HOM05D007453 ORTHO05D009223 6.8e-13 77.8 87 48.3
TPR.G29466 Trifolium pratense HOM05D007453 ORTHO05D009223 6.8e-13 77.8 85 45.9
arahy.Tifrunner.gnm1.ann1.D3ZUUX Arachis hypogaea HOM05D007453 ORTHO05D009223 8.9e-13 77.4 86 48.8
CiPaw.05G140500 Carya illinoinensis HOM05D007453 ORTHO05D009223 8.9e-13 77.4 90 48.9
Duzib248G0401 Durio zibethinus HOM05D007453 ORTHO05D009223 8.9e-13 77.4 89 49.4
VMungo1215G3437 Vigna mungo HOM05D007453 ORTHO05D009223 8.9e-13 77.4 85 47.1
Ca_07373_v3 Cicer arietinum L. HOM05D007453 ORTHO05D009223 1.2e-12 77.0 85 47.1
Lsat_1_v5_gn_3_49860 Lactuca sativa HOM05D007453 ORTHO05D009223 1.2e-12 77.0 51 70.6
Lalb_Chr10g0097941 Lupinus albus HOM05D007453 ORTHO05D009223 1.2e-12 77.0 85 45.9
MELO3C012060.2 Cucumis melo HOM05D007453 ORTHO05D009223 1.5e-12 76.6 88 51.1
Sabra10G0030300 Salix brachista HOM05D007453 ORTHO05D009223 1.5e-12 76.6 91 49.5
Duzib248G0483 Durio zibethinus HOM05D007453 ORTHO05D009223 2.0e-12 76.3 89 49.4
Duzib251G0796 Durio zibethinus HOM05D007453 ORTHO05D009223 2.0e-12 76.3 89 48.3
Phvul.002G077900 Phaseolus vulgaris HOM05D007453 ORTHO05D009223 2.6e-12 75.9 85 45.9
Medtr5g038225 Medicago truncatula HOM05D007453 ORTHO05D009223 4.4e-12 75.1 85 45.9
Solyc05g006960.3 Solanum lycopersicum HOM05D007453 ORTHO05D009223 4.4e-12 75.1 88 45.5
Sopen05g002920 Solanum pennellii HOM05D007453 ORTHO05D009223 4.4e-12 75.1 88 45.5
PGSC0003DMG400017639 Solanum tuberosum HOM05D007453 ORTHO05D009223 4.4e-12 75.1 88 45.5
TAR481G0010 Trochodendron aralioides HOM05D007453 ORTHO05D009223 5.8e-12 74.7 85 45.9
Glyma.01G041651 Glycine max HOM05D007453 ORTHO05D009223 7.5e-12 74.3 85 44.7
Nitab4.5_0000679g0070 Nicotiana tabacum HOM05D007453 ORTHO05D009223 1.3e-11 73.6 106 42.5
Prupe.1G267100 Prunus persica HOM05D007453 ORTHO05D009223 1.3e-11 73.6 92 45.7
MBI01_g12858_MAGBIO Magnolia biondii HOM05D007453 ORTHO05D009223 2.9e-11 72.4 87 43.7
TWI75G0120 Tripterygium wilfordii HOM05D007453 ORTHO05D009223 2.9e-11 72.4 87 49.4
Atru.chr11.1862 Acer truncatum HOM05D007453 ORTHO05D009223 3.7e-11 72.0 83 48.2
FAN22G0202 Fragaria x ananassa HOM05D007453 ORTHO05D009223 3.7e-11 72.0 93 45.2
Nitab4.5_0002969g0020 Nicotiana tabacum HOM05D007453 ORTHO05D009223 3.7e-11 72.0 106 42.5
Psat2g125360 Pisum sativum HOM05D007453 ORTHO05D009223 8.3e-11 70.9 85 42.4
CSS0012607 Camellia sinensis var. sinensis HOM05D007453 ORTHO05D009223 1.1e-10 70.5 85 47.1
FvH4_4g32080 Fragaria vesca HOM05D007453 ORTHO05D009223 1.1e-10 70.5 93 44.1
FAN07G0059 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.1e-10 70.5 93 44.1
FAN12G0628 Fragaria x ananassa HOM05D007453 ORTHO05D009223 1.1e-10 70.5 93 44.1
RcHm_v2.0_Chr4g0440771 Rosa chinensis HOM05D007453 ORTHO05D009223 1.4e-10 70.1 92 43.5
Eucgr.B03407 Eucalyptus grandis HOM05D007453 ORTHO05D009223 2.4e-10 69.3 92 45.7
Thhalv10008803m.g Eutrema salsugineum HOM05D007453 ORTHO05D009223 4.1e-10 68.6 89 43.8
PSO832G2667 Papaver somniferum HOM05D007453 ORTHO05D009223 4.1e-10 68.6 83 44.6
PGR119G1700 Punica granatum HOM05D007453 ORTHO05D009223 4.1e-10 68.6 91 44.0
Cpa.g.sc1379.2 Carica papaya HOM05D007453 ORTHO05D009223 5.4e-10 68.2 95 43.2
unitig_62.g23683 Utricularia gibba HOM05D007453 ORTHO05D009223 7.0e-10 67.8 85 47.1
SGA_v2.0_scaffold87G26973 Striga asiatica HOM05D007453 ORTHO05D009223 1.2e-09 67.0 92 42.4
MSTRG.2362 Avicennia marina HOM05D007453 ORTHO05D009223 2.0e-09 66.2 96 44.8
PSO591G0176 Papaver somniferum HOM05D007453 ORTHO05D009223 2.0e-09 66.2 80 42.5
Aa31LG7G8100 Aethionema arabicum HOM05D007453 ORTHO05D009223 2.7e-09 65.9 91 42.9
Nn4g23028 Nelumbo nucifera HOM05D007453 ORTHO05D009223 2.7e-09 65.9 89 44.9
THA.LOC104822931 Tarenaya hassleriana HOM05D007453 ORTHO05D009223 3.5e-09 65.5 94 42.6
Migut.E00119 Erythranthe guttata HOM05D007453 ORTHO05D009223 4.6e-09 65.1 100 41.0
Carub.0001s2392 Capsella rubella HOM05D007453 ORTHO05D009223 1.9e-07 59.7 92 38.0
ClCG05G024650 Citrullus lanatus HOM05D007453 ORTHO05D009223 1.9e-07 59.7 82 45.1
EL10Ac6g13141 Beta vulgaris HOM05D007453 ORTHO05D009223 3.3e-07 58.9 63 54.0
Hund05917 Selenicereus undatus HOM05D007453 ORTHO05D009223 3.3e-07 58.9 75 45.3
GSVIVG01020080001 Vitis vinifera HOM05D007453 ORTHO05D009223 3.3e-07 58.9 80 41.2
AT1G27050 Arabidopsis thaliana HOM05D007453 ORTHO05D009223 2.8e-06 55.8 90 38.9
CARHR024860 Cardamine hirsuta HOM05D007453 ORTHO05D009223 2.8e-06 55.8 88 37.5
MD13G1079700 Malus domestica HOM05D007453 ORTHO05D009223 2.8e-06 55.8 92 38.0
Sc11g0001650 Simmondsia chinensis HOM05D007453 ORTHO05D009223 2.8e-06 55.8 85 51.8
Aqoxy3G03257 Aquilegia oxysepala HOM05D007453 ORTHO05D009223 3.6e-06 55.5 83 34.9


User provided reference genes

Program Settings