Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C12T9 Lonicera japonica HOM05D003336 ORTHO05D003807 3.6e-85 318.2 155 100.0
Lj6C18T11 Lonicera japonica HOM05D003336 ORTHO05D003807 5.8e-67 257.7 143 91.6
Dinv22743 Davidia involucrata HOM05D003336 ORTHO05D003807 3.2e-65 251.9 143 88.8
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 7.0e-65 250.8 143 88.1
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 2.1e-64 249.2 143 83.9
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 2.7e-64 248.8 143 86.7
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 3.5e-64 248.4 143 87.4
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 3.5e-64 248.4 143 86.7
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.8e-64 247.3 143 86.0
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 7.8e-64 247.3 143 86.7
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 7.8e-64 247.3 143 86.0
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 1.0e-63 246.9 143 85.3
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.0e-63 246.9 143 85.3
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 1.3e-63 246.5 143 87.4
CSS0038429 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.3e-63 245.7 143 85.3
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 2.3e-63 245.7 143 84.6
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 3.0e-63 245.4 143 83.2
Duzib175G0004 Durio zibethinus HOM05D003336 ORTHO05D003807 3.9e-63 245.0 142 85.9
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 3.9e-63 245.0 143 84.6
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 3.9e-63 245.0 143 85.3
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 3.9e-63 245.0 143 83.9
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 5.1e-63 244.6 143 85.3
vmacro00616 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 5.1e-63 244.6 143 85.3
vmacro00649 Vaccinium macrocarpon HOM05D003336 ORTHO05D003807 5.1e-63 244.6 143 85.3
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 6.6e-63 244.2 141 85.8
DCAR_026317 Daucus carota HOM05D003336 ORTHO05D003807 6.6e-63 244.2 143 84.6
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 8.6e-63 243.8 143 85.3
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 8.6e-63 243.8 143 85.3
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 8.6e-63 243.8 143 84.6
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 8.6e-63 243.8 143 82.5
CSS0035259 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.1e-62 243.4 143 84.6
FvH4_7g04970 Fragaria vesca HOM05D003336 ORTHO05D003807 1.1e-62 243.4 143 84.6
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.1e-62 243.4 142 83.8
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 1.1e-62 243.4 142 83.8
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 1.1e-62 243.4 142 84.5
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.5e-62 243.0 142 85.2
Haze_21691 Corylus avellana HOM05D003336 ORTHO05D003807 1.5e-62 243.0 143 84.6
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 1.5e-62 243.0 142 85.2
Ca_10458_v3 Cicer arietinum L. HOM05D003336 ORTHO05D003807 1.9e-62 242.7 143 83.2
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.9e-62 242.7 143 83.9
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.9e-62 242.7 142 82.4
Cfa013247 Carpinus fangiana HOM05D003336 ORTHO05D003807 2.5e-62 242.3 143 84.6
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 2.5e-62 242.3 143 82.5
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 2.5e-62 242.3 143 83.9
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 2.5e-62 242.3 143 84.6
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 3.3e-62 241.9 143 81.8
Nn1g09612 Nelumbo nucifera HOM05D003336 ORTHO05D003807 3.3e-62 241.9 143 83.2
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 4.3e-62 241.5 143 83.2
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 4.3e-62 241.5 140 84.3
Actinidia35985 Actinidia chinensis HOM05D003336 ORTHO05D003807 5.6e-62 241.1 143 83.2
Actinidia35987 Actinidia chinensis HOM05D003336 ORTHO05D003807 5.6e-62 241.1 143 83.2
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 5.6e-62 241.1 143 83.2
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.2e-61 240.0 141 84.4
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 1.2e-61 240.0 143 82.5
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 1.6e-61 239.6 143 83.9
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 2.1e-61 239.2 140 85.0
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 2.8e-61 238.8 143 83.2
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 4.7e-61 238.0 142 82.4
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 4.7e-61 238.0 143 82.5
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.7e-61 238.0 124 91.9
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.7e-61 238.0 124 91.9
FAN17G2067 Fragaria x ananassa HOM05D003336 ORTHO05D003807 4.7e-61 238.0 146 79.5
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 6.2e-61 237.7 142 81.7
Aqoxy1G02652 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.1e-60 236.9 140 83.6
MELO3C028715.2 Cucumis melo HOM05D003336 ORTHO05D003807 1.1e-60 236.9 143 81.8
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 1.1e-60 236.9 142 81.0
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.4e-60 236.5 142 83.1
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.4e-60 236.5 142 83.1
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 1.8e-60 236.1 141 83.0
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 1.8e-60 236.1 142 81.7
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 2.3e-60 235.7 142 82.4
MELO3C000960.2 Cucumis melo HOM05D003336 ORTHO05D003807 2.3e-60 235.7 143 81.1
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 3.1e-60 235.3 142 80.3
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 3.1e-60 235.3 142 81.0
Nitab4.5_0005460g0060 Nicotiana tabacum HOM05D003336 ORTHO05D003807 3.1e-60 235.3 142 83.8
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 3.1e-60 235.3 142 81.0
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 4.0e-60 235.0 143 81.1
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 4.0e-60 235.0 143 81.1
Peaxi162Scf00108g01317 Petunia axillaris HOM05D003336 ORTHO05D003807 4.0e-60 235.0 142 83.8
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 5.2e-60 234.6 142 79.6
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 5.2e-60 234.6 142 82.4
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 5.2e-60 234.6 142 79.6
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 5.2e-60 234.6 143 81.8
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 8.9e-60 233.8 143 78.3
Nitab4.5_0000233g0220 Nicotiana tabacum HOM05D003336 ORTHO05D003807 8.9e-60 233.8 142 82.4
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 8.9e-60 233.8 142 80.3
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.2e-59 233.4 142 81.0
Cc04_g08960 Coffea canephora HOM05D003336 ORTHO05D003807 1.5e-59 233.0 142 81.7
Potri.007G129400 Populus trichocarpa HOM05D003336 ORTHO05D003807 1.5e-59 233.0 124 91.9
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 2.0e-59 232.6 143 79.0
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 2.0e-59 232.6 141 82.3
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 2.6e-59 232.3 142 80.3
GSVIVG01010779001 Vitis vinifera HOM05D003336 ORTHO05D003807 2.6e-59 232.3 143 79.0
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 3.4e-59 231.9 143 78.3
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 4.4e-59 231.5 143 79.7
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 9.9e-59 230.3 143 77.6
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 9.9e-59 230.3 143 77.6
MBI01_g10303_MAGBIO Magnolia biondii HOM05D003336 ORTHO05D003807 9.9e-59 230.3 140 82.9
SalBow1G0055 Salvia bowleyana HOM05D003336 ORTHO05D003807 1.3e-58 229.9 142 79.6
SalBow1G1314 Salvia bowleyana HOM05D003336 ORTHO05D003807 1.3e-58 229.9 142 79.6
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 3.7e-58 228.4 143 76.9
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 3.7e-58 228.4 140 81.4
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 6.4e-58 227.6 143 76.9
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 6.4e-58 227.6 142 78.9
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 8.3e-58 227.3 143 76.9
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 8.3e-58 227.3 143 76.9
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 1.4e-57 226.5 142 76.8
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.9e-57 226.1 135 83.0
BcaB07g33710 Brassica carinata HOM05D003336 ORTHO05D003807 4.1e-57 224.9 143 74.8
Sp7g20730 Schrenkiella parvula HOM05D003336 ORTHO05D003807 1.6e-56 223.0 143 75.5
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 6.0e-56 221.1 143 74.1
SEGI_08325 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 3.9e-55 218.4 140 75.7
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 1.6e-53 213.0 140 72.9
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 2.4e-52 209.1 139 74.1
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 2.9e-50 202.2 140 68.6
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 4.9e-50 201.4 140 69.3
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 2.4e-49 199.1 140 69.3
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 5.4e-49 198.0 139 67.6
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 1.2e-48 196.8 139 67.6
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.7e-47 193.0 143 71.3
Atru.chr6.1069 Acer truncatum HOM05D003336 ORTHO05D003807 3.9e-47 191.8 109 87.2
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 2.1e-45 186.0 137 66.4
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 2.0e-43 179.5 140 62.1
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 7.6e-43 177.6 143 66.4
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.2e-41 172.2 143 66.4
Sed0015341 Sechium edule HOM05D003336 ORTHO05D003807 1.2e-40 170.2 143 66.4
Haze_26283 Corylus avellana HOM05D003336 ORTHO05D003807 3.0e-39 165.6 143 52.4
CDE02G0747 Ceratophyllum demersum HOM05D003336 ORTHO05D003807 6.6e-39 164.5 85 87.1
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 1.3e-37 160.2 101 76.2
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 1.8e-36 156.4 140 61.4
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 2.6e-35 152.5 157 47.1
Lalb_Chr09g0333021 Lupinus albus HOM05D003336 ORTHO05D003807 6.0e-32 141.4 118 62.7
Prupe.1G196100 Prunus persica HOM05D003336 ORTHO05D003807 6.0e-32 141.4 124 63.7
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.9e-32 141.0 145 56.6
A08p15940 Brassica napus HOM05D003336 ORTHO05D003807 3.0e-31 139.0 109 66.1
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 7.6e-27 124.4 82 74.4
BraA08t33567Z Brassica rapa HOM05D003336 ORTHO05D003807 3.7e-21 105.5 71 70.4
Sabra07G0105400 Salix brachista HOM05D003336 ORTHO05D000611 1.5e-19 100.1 97 55.7
AagrBONN_evm.TU.Sc2ySwM_117.2573 Anthoceros agrestis HOM05D001778 ORTHO05D005872 5.8e-19 98.2 124 46.8
CSS0002456 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.1e-15 85.1 124 45.2
RcHm_v2.0_Chr1g0329841 Rosa chinensis HOM05D003336 ORTHO05D003807 3.3e-14 82.4 62 71.0
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 9.7e-14 80.9 59 72.9
Psat6g173760 Pisum sativum HOM05D003336 ORTHO05D003807 2.8e-13 79.3 59 71.2
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.8e-12 76.6 63 66.7
CSS0004282 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 2.2e-10 69.7 59 67.8
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 2.9e-10 69.3 40 82.5
CARHR113970 Cardamine hirsuta HOM05D003336 ORTHO05D003807 6.5e-10 68.2 54 68.5
CSS0009752 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 8.5e-10 67.8 59 59.3
Atru.chr5.287 Acer truncatum HOM05D005501 ORTHO05D007485 4.6e-08 62.0 122 29.5
Eucgr.E01449 Eucalyptus grandis HOM05D005501 ORTHO05D007485 4.6e-08 62.0 124 30.6
Cre14.g615500 Chlamydomonas reinhardtii HOM05D005501 ORTHO05D007485 1.0e-07 60.8 120 30.8
ATR0757G194 Amborella trichopoda HOM05D005501 ORTHO05D007485 2.3e-07 59.7 119 30.3
PGR042G1853 Punica granatum HOM05D005501 ORTHO05D007485 2.3e-07 59.7 124 29.8
FAN06G2192 Fragaria x ananassa HOM05D005501 ORTHO05D007485 5.1e-07 58.5 124 27.4
RcHm_v2.0_Chr1g0349931 Rosa chinensis HOM05D005501 ORTHO05D007485 5.1e-07 58.5 124 29.0
Manes.01G266900 Manihot esculenta HOM05D005501 ORTHO05D007485 6.7e-07 58.2 125 26.4
FvH4_7g11490 Fragaria vesca HOM05D005501 ORTHO05D007485 8.8e-07 57.8 124 27.4
FAN03G0203 Fragaria x ananassa HOM05D005501 ORTHO05D007485 8.8e-07 57.8 124 27.4
FAN06G3216 Fragaria x ananassa HOM05D005501 ORTHO05D007485 8.8e-07 57.8 124 27.4
FAN10G2689 Fragaria x ananassa HOM05D005501 ORTHO05D007485 8.8e-07 57.8 124 27.4
FAN10G2758 Fragaria x ananassa HOM05D005501 ORTHO05D007485 8.8e-07 57.8 124 27.4
Migut.B01618 Erythranthe guttata HOM05D005501 ORTHO05D007485 1.1e-06 57.4 124 29.8
FAN01G2666 Fragaria x ananassa HOM05D005501 ORTHO05D007485 1.1e-06 57.4 124 27.4
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 1.1e-06 57.4 47 66.0
Thhalv10001427m.g Eutrema salsugineum HOM05D005501 ORTHO05D007485 1.5e-06 57.0 122 27.9
Lj6C18T3 Lonicera japonica HOM05D003336 ORTHO05D003807 1.5e-06 57.0 34 79.4
GSVIVG01027664001 Vitis vinifera HOM05D005501 ORTHO05D007485 2.0e-06 56.6 122 27.9
QL08p052809 Quercus lobata HOM05D005501 ORTHO05D007485 5.7e-06 55.1 122 27.9


User provided reference genes

Program Settings