Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C128T1 Lonicera japonica HOM05D004754 ORTHO05D005566 1.5e-36 155.6 77 100.0
Lju897C0T7 Lonicera japonica HOM05D004754 ORTHO05D005566 3.2e-34 147.9 77 97.4
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 2.3e-24 115.2 66 83.3
Lju897C2T5 Lonicera japonica HOM05D004754 ORTHO05D005566 5.1e-24 114.0 68 86.8
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 2.8e-22 108.2 67 74.6
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 1.1e-21 106.3 66 74.2
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.1e-21 104.8 67 71.6
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 4.1e-21 104.4 66 71.2
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 5.3e-21 104.0 66 72.7
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 5.3e-21 104.0 67 73.1
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 9.0e-21 103.2 67 70.1
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 9.0e-21 103.2 69 66.7
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 1.2e-20 102.8 66 71.2
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.2e-20 102.8 69 68.1
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 1.2e-20 102.8 67 68.7
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 1.5e-20 102.4 67 68.7
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 1.5e-20 102.4 66 72.7
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.6e-20 101.7 67 68.7
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 2.6e-20 101.7 67 68.7
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 3.4e-20 101.3 67 68.7
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.5e-20 100.9 69 65.2
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 5.9e-20 100.5 69 63.8
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 7.6e-20 100.1 66 68.2
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.6e-20 100.1 67 65.7
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 1.3e-19 99.4 69 69.6
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 1.3e-19 99.4 66 69.7
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.3e-19 99.4 67 67.2
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.7e-19 99.0 66 68.2
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.7e-19 99.0 66 68.2
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 1.7e-19 99.0 67 65.7
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 2.2e-19 98.6 67 70.1
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 2.2e-19 98.6 66 69.7
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 2.9e-19 98.2 66 69.7
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 2.9e-19 98.2 67 68.7
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 2.9e-19 98.2 67 68.7
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 3.8e-19 97.8 66 68.2
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 5.0e-19 97.4 67 70.1
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 5.0e-19 97.4 66 69.7
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 5.0e-19 97.4 66 68.2
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 6.5e-19 97.1 67 70.1
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 8.5e-19 96.7 67 64.2
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 8.5e-19 96.7 67 65.7
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 8.5e-19 96.7 69 66.7
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 1.4e-18 95.9 70 68.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 1.4e-18 95.9 74 60.8
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.4e-18 95.9 67 68.7
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.4e-18 95.9 67 68.7
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 1.4e-18 95.9 66 68.2
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 2.5e-18 95.1 67 65.7
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 2.5e-18 95.1 74 55.4
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 2.5e-18 95.1 66 66.7
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 3.2e-18 94.7 66 66.7
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 3.2e-18 94.7 67 65.7
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 3.2e-18 94.7 67 65.7
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 3.2e-18 94.7 67 65.7
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 4.2e-18 94.4 70 64.3
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 4.2e-18 94.4 66 71.2
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 4.2e-18 94.4 69 59.4
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 4.2e-18 94.4 67 64.2
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 4.2e-18 94.4 69 66.7
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 9.3e-18 93.2 67 65.7
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 9.3e-18 93.2 67 65.7
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 1.2e-17 92.8 66 63.6
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 1.2e-17 92.8 67 64.2
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.6e-17 92.4 67 64.2
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.6e-17 92.4 67 64.2
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 2.1e-17 92.0 74 55.4
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 2.7e-17 91.7 67 64.2
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 3.6e-17 91.3 67 67.2
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.6e-17 91.3 67 65.7
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.6e-17 91.3 67 65.7
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 3.6e-17 91.3 67 65.7
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 3.6e-17 91.3 67 64.2
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 3.6e-17 91.3 67 64.2
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 3.6e-17 91.3 67 65.7
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 4.6e-17 90.9 74 54.1
VMungo1309G1961 Vigna mungo HOM05D004754 ORTHO05D005566 4.6e-17 90.9 76 57.9
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 6.1e-17 90.5 68 60.3
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 6.1e-17 90.5 66 63.6
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 7.9e-17 90.1 67 62.7
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.9e-17 90.1 67 64.2
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 7.9e-17 90.1 67 62.7
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 1.0e-16 89.7 67 62.7
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 1.0e-16 89.7 67 55.2
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 1.3e-16 89.4 66 62.1
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 1.8e-16 89.0 66 62.1
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 2.3e-16 88.6 67 65.7
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 2.3e-16 88.6 68 60.3
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 6.7e-16 87.0 67 61.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 6.7e-16 87.0 67 61.2
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 1.1e-15 86.3 67 61.2
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 1.5e-15 85.9 74 50.0
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 2.5e-15 85.1 67 64.2
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.5e-15 85.1 67 59.7
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 2.5e-15 85.1 67 59.7
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 4.3e-15 84.3 67 62.7
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 5.7e-15 84.0 66 56.1
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 5.7e-15 84.0 67 56.7
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 5.7e-15 84.0 74 48.6
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 2.8e-14 81.6 75 48.0
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 3.7e-14 81.3 76 51.3
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 8.2e-14 80.1 77 48.1
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 1.1e-13 79.7 67 55.2
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 1.1e-13 79.7 70 55.7
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 1.4e-13 79.3 66 53.0
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 1.4e-13 79.3 73 52.1
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.4e-13 79.3 69 50.7
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 4.1e-13 77.8 67 53.7
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 4.1e-13 77.8 68 54.4
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 2.6e-12 75.1 66 50.0
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 4.5e-12 74.3 68 52.9
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.7e-11 72.4 67 53.7
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 1.7e-11 72.4 67 53.7
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 2.2e-11 72.0 67 52.2
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 3.8e-11 71.2 77 42.9
Psat5g233560 Pisum sativum HOM05D004754 ORTHO05D005566 3.8e-11 71.2 63 52.4
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.9e-10 68.9 67 46.3
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.9e-10 68.9 67 50.7
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 7.2e-10 67.0 68 47.1
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 7.2e-10 67.0 68 47.1
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.6e-09 65.9 67 47.8
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 1.6e-09 65.9 47 63.8
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.8e-08 62.4 67 44.8
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-07 59.7 67 44.8
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 7.4e-07 57.0 68 42.6
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 7.4e-07 57.0 67 43.3
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.3e-06 56.2 70 42.9
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.3e-06 56.2 75 42.7
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 2.8e-06 55.1 71 45.1


User provided reference genes

Program Settings