Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6C103G5 Lonicera japonica HOM05D003653 ORTHO05D004249 6.5e-252 873.6 454 100.0
Lj4C921G8 Lonicera japonica HOM05D003653 ORTHO05D004249 9.6e-163 577.4 444 74.8
Lj6C86G4 Lonicera japonica HOM05D003653 ORTHO05D004249 8.8e-148 527.7 444 70.7
GSVIVG01015003001 Vitis vinifera HOM05D003653 ORTHO05D004249 1.7e-135 486.9 463 62.9
TWI32G0371 Tripterygium wilfordii HOM05D003653 ORTHO05D004249 2.9e-135 486.1 463 63.7
QL02p096254 Quercus lobata HOM05D003653 ORTHO05D004249 1.4e-134 483.8 463 62.9
QL02p096361 Quercus lobata HOM05D003653 ORTHO05D004249 3.6e-133 479.2 463 62.2
Dinv11396 Davidia involucrata HOM05D003653 ORTHO05D004249 4.7e-133 478.8 463 63.1
Ciclev10007512m.g Citrus clementina HOM05D003653 ORTHO05D004249 1.0e-132 477.6 463 62.4
COL.COLO4_21195 Corchorus olitorius HOM05D003653 ORTHO05D004249 1.8e-132 476.9 463 61.3
Cfa000655 Carpinus fangiana HOM05D003653 ORTHO05D004249 2.3e-132 476.5 463 62.2
Actinidia05573 Actinidia chinensis HOM05D003653 ORTHO05D004249 2.6e-131 473.0 463 61.8
CANSAT56G3945 Cannabis sativa HOM05D003653 ORTHO05D004249 2.6e-131 473.0 463 61.8
Potri.010G138900 Populus trichocarpa HOM05D003653 ORTHO05D004249 2.6e-131 473.0 463 60.3
CiPaw.07G188300 Carya illinoinensis HOM05D003653 ORTHO05D004249 4.4e-131 472.2 463 61.6
Thecc.09G069200 Theobroma cacao HOM05D003653 ORTHO05D004249 1.3e-130 470.7 463 60.7
Hma1.2p1_0179F.1_g079140 Hydrangea macrophylla HOM05D003653 ORTHO05D004249 1.7e-130 470.3 463 61.1
Duzib150G1359 Durio zibethinus HOM05D003653 ORTHO05D004249 2.2e-130 469.9 463 60.9
Eucgr.C00763 Eucalyptus grandis HOM05D003653 ORTHO05D004249 4.8e-130 468.8 463 60.3
Atru.chr7.1784 Acer truncatum HOM05D003653 ORTHO05D004249 1.4e-129 467.2 463 60.5
Manes.16G089600 Manihot esculenta HOM05D003653 ORTHO05D004249 1.4e-129 467.2 463 60.9
Prupe.7G190900 Prunus persica HOM05D003653 ORTHO05D004249 5.3e-129 465.3 464 61.2
Gohir.A06G084400 Gossypium hirsutum HOM05D003653 ORTHO05D004249 9.1e-129 464.5 463 59.2
Nn8g38522 Nelumbo nucifera HOM05D003653 ORTHO05D004249 1.6e-128 463.8 463 60.9
Gohir.D06G081700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 2.6e-128 463.0 463 59.0
vmacro03339 Vaccinium macrocarpon HOM05D003653 ORTHO05D004249 2.6e-128 463.0 507 57.6
Gorai.010G095200 Gossypium raimondii HOM05D003653 ORTHO05D004249 7.7e-128 461.5 463 58.7
SGA_v2.0_scaffold55G19872 Striga asiatica HOM05D003653 ORTHO05D004249 7.7e-128 461.5 463 60.0
Glyma.13G114900 Glycine max HOM05D003653 ORTHO05D004249 1.3e-127 460.7 463 60.3
VMungo1215G1873 Vigna mungo HOM05D003653 ORTHO05D004249 1.7e-127 460.3 463 60.7
MSTRG.26501 Avicennia marina HOM05D003653 ORTHO05D004249 2.2e-127 459.9 463 60.9
DCAR_028533 Daucus carota HOM05D003653 ORTHO05D004249 3.8e-127 459.1 463 60.0
Manes.03G045400 Manihot esculenta HOM05D003653 ORTHO05D004249 6.5e-127 458.4 463 59.6
CiPaw.08G039100 Carya illinoinensis HOM05D003653 ORTHO05D004249 1.5e-126 457.2 463 59.6
THA.LOC104812181 Tarenaya hassleriana HOM05D003653 ORTHO05D004249 1.9e-126 456.8 465 59.4
Glyma.17G045100 Glycine max HOM05D003653 ORTHO05D004249 2.5e-126 456.4 463 59.6
RcHm_v2.0_Chr2g0096121 Rosa chinensis HOM05D003653 ORTHO05D004249 3.2e-126 456.1 463 60.5
TPR.G12688 Trifolium pratense HOM05D003653 ORTHO05D004249 4.2e-126 455.7 463 59.4
Cc06_g12780 Coffea canephora HOM05D003653 ORTHO05D004249 7.2e-126 454.9 463 58.1
Lj4g0027638 Lotus japonicus HOM05D003653 ORTHO05D004249 7.2e-126 454.9 463 59.2
Lalb_Chr13g0299181 Lupinus albus HOM05D003653 ORTHO05D004249 9.4e-126 454.5 463 59.4
SalBow5G5324 Salvia bowleyana HOM05D003653 ORTHO05D004249 9.4e-126 454.5 463 59.6
FAN23G3130 Fragaria x ananassa HOM05D003653 ORTHO05D004249 1.2e-125 454.1 462 60.2
FvH4_1g09540 Fragaria vesca HOM05D003653 ORTHO05D004249 2.1e-125 453.4 463 60.0
FAN19G0402 Fragaria x ananassa HOM05D003653 ORTHO05D004249 2.1e-125 453.4 463 60.0
HanXRQChr11g0323951 Helianthus annuus HOM05D003653 ORTHO05D004249 2.7e-125 453.0 466 58.6
TAR626G0857 Trochodendron aralioides HOM05D003653 ORTHO05D004249 2.7e-125 453.0 463 60.3
Aqoxy4G00013 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 3.6e-125 452.6 463 59.4
Migut.L01598 Erythranthe guttata HOM05D003653 ORTHO05D004249 3.6e-125 452.6 463 59.6
Gohir.A13G188800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 3.6e-125 452.6 463 59.0
FAN28G1145 Fragaria x ananassa HOM05D003653 ORTHO05D004249 4.7e-125 452.2 462 60.0
Gorai.013G221900 Gossypium raimondii HOM05D003653 ORTHO05D004249 4.7e-125 452.2 463 59.4
Haze_18437 Corylus avellana HOM05D003653 ORTHO05D004249 6.1e-125 451.8 452 61.1
FAN26G2747 Fragaria x ananassa HOM05D003653 ORTHO05D004249 6.1e-125 451.8 462 60.0
AL2G33210 Arabidopsis lyrata HOM05D003653 ORTHO05D004249 8.0e-125 451.4 463 59.2
Aqoxy7G04180 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 1.0e-124 451.1 463 59.4
Medtr4g124570 Medicago truncatula HOM05D003653 ORTHO05D004249 1.8e-124 450.3 463 59.2
Phvul.003G126900 Phaseolus vulgaris HOM05D003653 ORTHO05D004249 2.3e-124 449.9 463 59.8
Thhalv10018146m.g Eutrema salsugineum HOM05D003653 ORTHO05D004249 3.0e-124 449.5 463 58.7
C06p47610 Brassica napus HOM05D003653 ORTHO05D004249 4.0e-124 449.1 463 58.5
Gohir.D13G195800 Gossypium hirsutum HOM05D003653 ORTHO05D004249 4.0e-124 449.1 463 58.7
Lsat_1_v5_gn_9_48260 Lactuca sativa HOM05D003653 ORTHO05D004249 4.0e-124 449.1 463 58.5
Sp5g28630 Schrenkiella parvula HOM05D003653 ORTHO05D004249 5.2e-124 448.7 463 58.5
Psat4g019560 Pisum sativum HOM05D003653 ORTHO05D004249 8.8e-124 448.0 463 59.0
ATR0099G047 Amborella trichopoda HOM05D003653 ORTHO05D004249 1.2e-123 447.6 463 57.9
Sc18g0002910 Simmondsia chinensis HOM05D003653 ORTHO05D004249 1.2e-123 447.6 463 57.9
arahy.Tifrunner.gnm1.ann1.H5KB4L Arachis hypogaea HOM05D003653 ORTHO05D004249 2.6e-123 446.4 463 58.1
AT1G73430 Arabidopsis thaliana HOM05D003653 ORTHO05D004249 1.7e-122 443.7 463 58.3
ECA247G3145 Erigeron canadensis HOM05D003653 ORTHO05D004249 2.8e-122 443.0 463 57.7
MD15G1224400 Malus domestica HOM05D003653 ORTHO05D004249 1.1e-121 441.0 463 58.5
PSO724G1082 Papaver somniferum HOM05D003653 ORTHO05D004249 1.8e-121 440.3 463 56.8
Sabra10G0107200 Salix brachista HOM05D003653 ORTHO05D004249 1.8e-121 440.3 442 59.7
Carub.0001s3831 Capsella rubella HOM05D003653 ORTHO05D004249 2.4e-121 439.9 464 58.2
Aqoxy1G02116 Aquilegia oxysepala HOM05D003653 ORTHO05D004249 3.1e-121 439.5 463 57.9
Ah.09g228870 Amaranthus hybridus HOM05D003653 ORTHO05D004249 4.1e-121 439.1 463 57.0
PSO135G0095 Papaver somniferum HOM05D003653 ORTHO05D004249 2.0e-120 436.8 463 57.2
RcHm_v2.0_Chr2g0096281 Rosa chinensis HOM05D003653 ORTHO05D004249 5.9e-120 435.3 452 58.8
PSO541G4412 Papaver somniferum HOM05D003653 ORTHO05D004249 1.0e-119 434.5 462 56.9
Sed0017256 Sechium edule HOM05D003653 ORTHO05D004249 1.0e-119 434.5 463 57.9
MD02G1104000 Malus domestica HOM05D003653 ORTHO05D004249 1.3e-119 434.1 463 58.1
CsaV3_5G037140 Cucumis sativus L. HOM05D003653 ORTHO05D004249 2.2e-119 433.3 463 57.5
Sopen04g003800 Solanum pennellii HOM05D003653 ORTHO05D004249 6.5e-119 431.8 465 57.8
MELO3C022888.2 Cucumis melo HOM05D003653 ORTHO05D004249 1.5e-118 430.6 463 57.5
PGSC0003DMG400026759 Solanum tuberosum HOM05D003653 ORTHO05D004249 1.9e-118 430.3 465 57.2
Solyc04g008640.3 Solanum lycopersicum HOM05D003653 ORTHO05D004249 3.2e-118 429.5 465 57.6
Carub.0002s2017 Capsella rubella HOM05D003653 ORTHO05D004249 4.7e-117 425.6 504 53.6
CDE08G1372 Ceratophyllum demersum HOM05D003653 ORTHO05D004249 1.4e-116 424.1 463 55.7
CAN.G2030.2 Capsicum annuum HOM05D003653 ORTHO05D004249 1.8e-116 423.7 465 56.1
Nitab4.5_0001114g0100 Nicotiana tabacum HOM05D003653 ORTHO05D004249 1.8e-116 423.7 465 57.0
Aa31LG4G3690 Aethionema arabicum HOM05D003653 ORTHO05D004249 3.4e-115 419.5 463 55.7
EL10Ac8g18959 Beta vulgaris HOM05D003653 ORTHO05D004249 1.3e-114 417.5 463 54.4
Peaxi162Scf00320g00019 Petunia axillaris HOM05D003653 ORTHO05D004249 2.2e-114 416.8 451 57.4
arahy.Tifrunner.gnm1.ann1.LZJ3ZW Arachis hypogaea HOM05D003653 ORTHO05D004249 3.7e-114 416.0 442 57.0
CAN.G137.40 Capsicum annuum HOM05D003653 ORTHO05D004249 3.7e-114 416.0 465 55.5
Os08g0451000 Oryza sativa ssp. japonica HOM05D003653 ORTHO05D004249 8.3e-114 414.8 463 54.6
unitig_8.g3535 Utricularia gibba HOM05D003653 ORTHO05D004249 1.4e-113 414.1 472 53.4
BolC6t39799H Brassica oleracea HOM05D003653 ORTHO05D004249 2.0e-112 410.2 466 55.2
AUR62028329 Chenopodium quinoa HOM05D003653 ORTHO05D004249 2.0e-112 410.2 442 56.3
A07p39380 Brassica napus HOM05D003653 ORTHO05D004249 1.7e-111 407.1 463 54.6
AUR62025332 Chenopodium quinoa HOM05D003653 ORTHO05D004249 3.8e-111 406.0 442 55.7
Hund08907 Selenicereus undatus HOM05D003653 ORTHO05D004249 1.6e-109 400.6 443 55.5
HPP92_012790 Vanilla planifolia HOM05D003653 ORTHO05D004249 1.6e-109 400.6 463 51.6
Oeu028863.2 Olea europaea HOM05D003653 ORTHO05D004249 5.2e-108 395.6 421 56.8
CARHR066480 Cardamine hirsuta HOM05D003653 ORTHO05D004249 8.9e-108 394.8 463 53.6
MBI13_g01694_MAGBIO Magnolia biondii HOM05D003653 ORTHO05D004249 1.3e-106 391.0 463 54.6
Cpa.g.sc82.47 Carica papaya HOM05D003653 ORTHO05D004249 1.4e-105 387.5 388 60.6
ClCG08G005060 Citrullus lanatus HOM05D003653 ORTHO05D004249 2.0e-104 383.6 577 46.3
Rhsim06G0154000 Rhododendron simsii HOM05D003653 ORTHO05D004249 4.5e-104 382.5 609 44.8
C02p31060 Brassica napus HOM05D003653 ORTHO05D004249 2.9e-103 379.8 465 52.5
Duzib187G0285 Durio zibethinus HOM05D003653 ORTHO05D004249 6.1e-101 372.1 386 58.3
BraA07t31487Z Brassica rapa HOM05D003653 ORTHO05D004249 8.9e-100 368.2 466 51.3
Sopen07g006320 Solanum pennellii HOM05D003653 ORTHO05D004249 1.5e-99 367.5 481 51.4
FAN26G0928 Fragaria x ananassa HOM05D003653 ORTHO05D004249 7.5e-99 365.2 412 56.8
BcaC08g46765 Brassica carinata HOM05D003653 ORTHO05D004249 1.0e-95 354.8 448 52.2
CAN.G1364.1 Capsicum annuum HOM05D003653 ORTHO05D004249 8.6e-95 351.7 473 51.2
Mapoly0109s0022 Marchantia polymorpha HOM05D003653 ORTHO05D004249 1.5e-94 350.9 462 46.1
Pp3c10_7010 Physcomitrium patens HOM05D003653 ORTHO05D004249 1.1e-89 334.7 462 45.9
PSO675G3146 Papaver somniferum HOM05D003653 ORTHO05D004249 9.2e-89 331.6 384 54.2
SMO196G0011 Selaginella moellendorffii HOM05D003653 ORTHO05D004249 4.4e-83 312.8 462 43.9
Zm00001eb040740 Zea mays HOM05D003653 ORTHO05D004249 5.1e-79 299.3 319 55.2
BolC2t09153H Brassica oleracea HOM05D003653 ORTHO05D004249 1.5e-78 297.7 369 51.2
SEGI_38760 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 8.9e-76 288.5 320 53.8
CSS0010075 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 9.2e-73 278.5 214 74.8
CBR_g20391 Chara braunii HOM05D003653 ORTHO05D004249 2.9e-66 256.9 474 37.1
Pp3c14_9870 Physcomitrium patens HOM05D003653 ORTHO05D004249 3.2e-57 226.9 462 35.9
Haze_06171 Corylus avellana HOM05D003653 ORTHO05D004249 2.1e-53 214.2 176 70.5
TAR383G1054 Trochodendron aralioides HOM05D003653 ORTHO05D004249 1.7e-50 204.5 426 40.1
Cre03.g203750 Chlamydomonas reinhardtii HOM05D003653 ORTHO05D004249 3.2e-49 200.3 509 32.6
BcaNung06460 Brassica carinata HOM05D003653 ORTHO05D004249 6.7e-47 192.6 122 77.9
Nitab4.5_0022446g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 4.3e-46 189.9 230 52.6
Actinidia26999 Actinidia chinensis HOM05D003653 ORTHO05D004249 1.9e-41 174.5 161 64.6
QL02p096270 Quercus lobata HOM05D003653 ORTHO05D004249 5.1e-39 166.4 117 76.9
Haze_06172 Corylus avellana HOM05D003653 ORTHO05D004249 6.7e-39 166.0 336 39.0
ECA232G2537 Erigeron canadensis HOM05D003653 ORTHO05D004249 1.5e-38 164.9 365 35.3
Haze_16166 Corylus avellana HOM05D003653 ORTHO05D004249 2.0e-35 154.5 132 69.7
Lsat_1_v5_gn_7_58641 Lactuca sativa HOM05D003653 ORTHO05D004249 3.6e-32 143.7 151 60.9
Oeu030621.1 Olea europaea HOM05D003653 ORTHO05D004249 1.4e-31 141.7 137 59.9
Haze_19192 Corylus avellana HOM05D003653 ORTHO05D004249 1.8e-31 141.4 133 66.2
Lsat_1_v5_gn_2_26321 Lactuca sativa HOM05D003653 ORTHO05D004249 2.3e-31 141.0 151 60.3
Lsat_1_v5_gn_2_82101 Lactuca sativa HOM05D003653 ORTHO05D004249 5.1e-31 139.8 151 59.6
Lsat_1_v5_gn_4_28660 Lactuca sativa HOM05D003653 ORTHO05D004249 6.7e-31 139.4 151 59.6
Gorai.013G153500 Gossypium raimondii HOM05D003653 ORTHO05D004249 1.1e-30 138.7 131 61.1
Lsat_1_v5_gn_5_93841 Lactuca sativa HOM05D003653 ORTHO05D004249 2.0e-30 137.9 151 59.6
SEGI_01409 Sequoiadendron giganteum HOM05D003653 ORTHO05D004249 1.1e-25 122.1 118 59.3
Lsat_1_v5_gn_7_30301 Lactuca sativa HOM05D003653 ORTHO05D004249 4.2e-25 120.2 102 69.6
Gohir.D08G133700 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.0e-23 115.5 99 59.6
Gohir.D13G136950 Gossypium hirsutum HOM05D003653 ORTHO05D004249 1.4e-23 115.2 121 56.2
PRCOL_00003556 Prasinoderma coloniale HOM05D003653 ORTHO05D004249 1.4e-23 115.2 318 29.2
Gorai.004G136800 Gossypium raimondii HOM05D003653 ORTHO05D004249 8.8e-23 112.5 99 58.6
CAN.G4608.1 Capsicum annuum HOM05D003653 ORTHO05D004249 1.5e-22 111.7 189 42.3
Lsat_1_v5_gn_2_18300 Lactuca sativa HOM05D003653 ORTHO05D004249 9.7e-22 109.0 95 69.5
Nitab4.5_0000055g0010 Nicotiana tabacum HOM05D003653 ORTHO05D004249 8.2e-21 105.9 107 61.7
CAN.G12730.1 Capsicum annuum HOM05D003653 ORTHO05D004249 7.7e-19 99.4 86 66.3
CSS0022673 Camellia sinensis var. sinensis HOM05D003653 ORTHO05D004249 9.4e-17 92.4 51 88.2
Solyc07g017520.4 Solanum lycopersicum HOM05D003653 ORTHO05D004249 4.8e-13 80.1 76 59.2
VMungo1215G0910 Vigna mungo HOM05D003653 ORTHO05D004249 8.5e-10 69.3 132 39.4
Haze_16165 Corylus avellana HOM05D003653 ORTHO05D004249 6.1e-08 63.2 124 37.9
Cfa023740 Carpinus fangiana HOM05D003653 ORTHO05D004249 5.2e-07 60.1 303 24.1


User provided reference genes

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