Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 2.1e-146 522.3 263 100.0
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.7e-79 300.1 290 61.0
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.8e-76 290.0 291 57.7
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 1.2e-75 287.3 299 55.9
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 1.5e-75 287.0 294 56.8
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 3.7e-74 282.3 321 52.6
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 6.3e-74 281.6 286 55.2
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 8.3e-74 281.2 281 56.2
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 8.3e-74 281.2 293 54.9
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 1.4e-73 280.4 308 55.2
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 3.5e-72 275.8 301 52.2
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 5.9e-72 275.0 282 55.0
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 5.9e-72 275.0 290 55.2
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.3e-71 273.9 289 52.6
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 1.7e-71 273.5 290 54.5
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 2.3e-71 273.1 289 55.4
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 2.9e-71 272.7 289 51.9
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 2.9e-71 272.7 292 53.8
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 2.9e-71 272.7 290 54.8
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 3.8e-71 272.3 286 53.1
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 6.5e-71 271.6 287 51.6
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 5.5e-70 268.5 289 51.6
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 7.2e-70 268.1 286 51.7
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 7.2e-70 268.1 286 52.1
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 7.2e-70 268.1 286 52.1
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 9.5e-70 267.7 289 50.9
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 9.5e-70 267.7 289 52.2
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.2e-69 267.3 291 52.6
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 2.1e-69 266.5 292 50.7
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 6.1e-69 265.0 286 51.4
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 6.1e-69 265.0 289 51.9
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 6.1e-69 265.0 284 56.0
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 8.0e-69 264.6 290 51.0
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 1.8e-68 263.5 290 50.7
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.8e-68 263.5 296 50.0
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 2.3e-68 263.1 299 49.8
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 4.0e-68 262.3 290 51.0
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.4e-67 258.8 294 52.4
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 1.3e-66 257.3 288 52.1
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 2.2e-66 256.5 278 52.9
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 2.2e-66 256.5 292 52.1
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 3.7e-66 255.8 290 50.7
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 4.9e-66 255.4 308 48.4
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 8.3e-66 254.6 303 49.2
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 2.4e-65 253.1 297 49.2
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 3.1e-65 252.7 290 51.0
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 9.2e-65 251.1 278 52.5
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 9.2e-65 251.1 290 52.4
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 4.5e-64 248.8 298 49.7
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 7.8e-64 248.1 281 52.0
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 1.0e-63 247.7 280 51.1
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.3e-63 247.3 289 50.5
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 6.6e-63 245.0 297 48.8
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.1e-62 244.2 294 50.0
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 1.5e-62 243.8 282 50.0
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 2.5e-62 243.0 293 50.2
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 2.5e-62 243.0 295 51.2
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 4.3e-62 242.3 295 49.2
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 9.5e-62 241.1 293 50.2
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 9.5e-62 241.1 290 49.0
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 9.5e-62 241.1 264 53.0
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.6e-61 240.4 288 49.3
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 4.7e-61 238.8 296 48.6
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 6.1e-61 238.4 297 48.1
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 8.0e-61 238.0 293 49.8
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 4.0e-60 235.7 294 48.0
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 4.0e-60 235.7 284 48.2
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 5.2e-60 235.3 292 50.7
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 6.8e-60 235.0 284 48.9
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 2.6e-59 233.0 306 47.1
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.6e-59 233.0 265 52.5
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 4.9e-58 228.8 298 47.3
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 8.3e-58 228.0 265 50.2
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 8.3e-58 228.0 299 47.5
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.6e-56 223.8 274 48.9
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 2.7e-56 223.0 289 46.7
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 4.6e-56 222.2 339 40.1
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 5.6e-54 215.3 285 45.3
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.6e-53 213.8 292 48.6
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 3.6e-53 212.6 231 52.8
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 3.1e-52 209.5 297 44.4
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 4.0e-52 209.1 298 42.6
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 6.8e-52 208.4 297 45.1
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 9.8e-51 204.5 312 42.9
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 2.2e-50 203.4 267 46.8
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 2.9e-50 203.0 175 63.4
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.9e-50 203.0 290 44.8
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 1.4e-49 200.7 263 47.5
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 3.2e-49 199.5 218 52.8
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.9e-46 190.3 254 44.1
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 3.6e-45 186.0 183 56.8
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 4.7e-45 185.7 258 44.2
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 2.6e-43 179.9 277 43.3
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.9e-41 173.7 174 54.0
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 3.2e-41 172.9 297 39.1
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 3.5e-40 169.5 285 38.2
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 3.5e-40 169.5 180 53.3
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 5.1e-39 165.6 187 49.2
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 1.5e-38 164.1 172 50.0
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.5e-38 164.1 262 43.9
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.9e-38 163.7 294 38.4
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.9e-38 163.7 277 40.8
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 3.3e-38 162.9 313 39.0
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.3e-38 162.5 255 43.5
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.2e-37 161.0 294 38.1
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.4e-36 157.5 255 43.1
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 6.8e-36 155.2 154 53.9
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 1.2e-35 154.5 286 38.5
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.3e-34 151.0 201 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 9.2e-33 144.8 305 34.8
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 5.6e-30 135.6 155 48.4
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 9.6e-30 134.8 121 65.3
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.1e-29 133.7 160 48.8
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 9.9e-27 124.8 295 31.9
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.8e-26 122.9 155 45.8
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.9e-25 120.6 176 44.3
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 2.4e-25 120.2 155 45.2
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 9.3e-25 118.2 153 45.1
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.3e-21 107.8 292 30.5
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 2.8e-21 106.7 285 30.2
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.6e-21 106.3 119 52.1
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.6e-21 106.3 119 52.1
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.2e-19 101.3 299 29.4
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 4.5e-19 99.4 70 68.6
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 6.4e-18 95.5 95 54.7
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 1.6e-16 90.9 304 26.6
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 2.7e-16 90.1 187 35.3
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 7.9e-16 88.6 46 89.1
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.7e-15 85.5 87 50.6
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 3.1e-12 76.6 92 47.8
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.4e-10 68.9 106 40.6
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 8.4e-10 68.6 51 70.6
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 2.4e-09 67.0 71 56.3
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 1.2e-08 64.7 98 40.8
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 2.7e-08 63.5 104 41.3


User provided reference genes

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