Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A830T28 Lonicera japonica HOM05D005688 ORTHO05D006630 3.6e-199 698.0 338 100.0
Hma1.2p1_0065F.1_g035040 Hydrangea macrophylla HOM05D005688 ORTHO05D006630 6.9e-166 587.4 349 85.1
Dinv11693 Davidia involucrata HOM05D005688 ORTHO05D006630 7.2e-163 577.4 345 83.5
Dinv17591 Davidia involucrata HOM05D005688 ORTHO05D006630 7.2e-163 577.4 344 83.7
Lsat_1_v5_gn_4_280 Lactuca sativa HOM05D005688 ORTHO05D006630 2.4e-158 562.4 353 78.5
Nitab4.5_0002277g0010 Nicotiana tabacum HOM05D005688 ORTHO05D006630 4.5e-157 558.1 344 79.9
Actinidia09624 Actinidia chinensis HOM05D005688 ORTHO05D006630 1.3e-156 556.6 341 80.9
Nitab4.5_0000251g0050 Nicotiana tabacum HOM05D005688 ORTHO05D006630 2.2e-156 555.8 346 78.9
CSS0036763 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 5.0e-156 554.7 342 81.9
CSS0038243 Camellia sinensis var. sinensis HOM05D005688 ORTHO05D006630 5.5e-155 551.2 344 79.7
Haze_12451 Corylus avellana HOM05D005688 ORTHO05D006630 3.9e-153 545.0 350 78.0
Sopen05g011970 Solanum pennellii HOM05D005688 ORTHO05D006630 8.8e-153 543.9 341 78.6
PGSC0003DMG400010801 Solanum tuberosum HOM05D005688 ORTHO05D006630 8.8e-153 543.9 341 78.6
Solyc05g015980.3 Solanum lycopersicum HOM05D005688 ORTHO05D006630 4.4e-152 541.6 341 78.3
Cfa009390 Carpinus fangiana HOM05D005688 ORTHO05D006630 1.3e-151 540.0 350 77.1
TAR629G3099 Trochodendron aralioides HOM05D005688 ORTHO05D006630 2.4e-150 535.8 349 76.5
HanXRQChr17g0568911 Helianthus annuus HOM05D005688 ORTHO05D006630 4.1e-150 535.0 339 78.2
Rhsim12G0023600 Rhododendron simsii HOM05D005688 ORTHO05D006630 1.6e-149 533.1 355 75.8
MSTRG.481 Avicennia marina HOM05D005688 ORTHO05D006630 7.7e-149 530.8 337 77.4
vmacro01046 Vaccinium macrocarpon HOM05D005688 ORTHO05D006630 3.8e-148 528.5 370 73.2
DCAR_024659 Daucus carota HOM05D005688 ORTHO05D006630 7.2e-147 524.2 340 75.6
Potri.001G059700 Populus trichocarpa HOM05D005688 ORTHO05D006630 4.7e-146 521.5 351 74.1
Prupe.1G222300 Prunus persica HOM05D005688 ORTHO05D006630 4.7e-146 521.5 360 72.5
ECA234G1377 Erigeron canadensis HOM05D005688 ORTHO05D006630 1.4e-145 520.0 349 76.2
SalBow2G0527 Salvia bowleyana HOM05D005688 ORTHO05D006630 1.4e-145 520.0 337 77.2
TAR371G0171 Trochodendron aralioides HOM05D005688 ORTHO05D006630 2.3e-145 519.2 345 75.4
Migut.E00005 Erythranthe guttata HOM05D005688 ORTHO05D006630 4.0e-145 518.5 340 76.2
FvH4_4g23370 Fragaria vesca HOM05D005688 ORTHO05D006630 1.2e-144 516.9 357 72.5
FAN12G1631 Fragaria x ananassa HOM05D005688 ORTHO05D006630 1.2e-144 516.9 357 72.5
Potri.003G168300 Populus trichocarpa HOM05D005688 ORTHO05D006630 1.5e-144 516.5 352 74.7
Thecc.02G201300 Theobroma cacao HOM05D005688 ORTHO05D006630 1.5e-144 516.5 349 73.9
MD16G1123300 Malus domestica HOM05D005688 ORTHO05D006630 2.0e-144 516.2 358 73.5
FAN17G3098 Fragaria x ananassa HOM05D005688 ORTHO05D006630 2.6e-144 515.8 355 72.1
Peaxi162Scf00128g01523 Petunia axillaris HOM05D005688 ORTHO05D006630 3.3e-144 515.4 348 74.1
RcHm_v2.0_Chr4g0429761 Rosa chinensis HOM05D005688 ORTHO05D006630 3.3e-144 515.4 354 74.0
Manes.12G008200 Manihot esculenta HOM05D005688 ORTHO05D006630 4.4e-144 515.0 357 73.1
FAN07G0693 Fragaria x ananassa HOM05D005688 ORTHO05D006630 7.5e-144 514.2 355 72.1
QL03p051598 Quercus lobata HOM05D005688 ORTHO05D006630 7.5e-144 514.2 356 73.3
Gohir.A04G100300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 9.7e-144 513.8 346 74.0
Phvul.008G017000 Phaseolus vulgaris HOM05D005688 ORTHO05D006630 9.7e-144 513.8 360 72.5
Actinidia39795 Actinidia chinensis HOM05D005688 ORTHO05D006630 2.2e-143 512.7 320 80.0
Gohir.D04G139300 Gossypium hirsutum HOM05D005688 ORTHO05D006630 2.8e-143 512.3 346 74.0
Glyma.18G284500 Glycine max HOM05D005688 ORTHO05D006630 3.7e-143 511.9 359 73.0
Sc04g0010310 Simmondsia chinensis HOM05D005688 ORTHO05D006630 3.7e-143 511.9 349 73.6
Gorai.012G124400 Gossypium raimondii HOM05D005688 ORTHO05D006630 4.8e-143 511.5 346 74.3
CiPaw.05G106800 Carya illinoinensis HOM05D005688 ORTHO05D006630 6.3e-143 511.1 352 73.0
Ciclev10032000m.g Citrus clementina HOM05D005688 ORTHO05D006630 6.3e-143 511.1 347 72.9
Duzib251G0174 Durio zibethinus HOM05D005688 ORTHO05D006630 1.1e-142 510.4 346 72.8
TWI75G1512 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 4.1e-142 508.4 350 73.7
BolC9t59237H Brassica oleracea HOM05D005688 ORTHO05D006630 7.0e-142 507.7 353 70.0
CANSAT80G0816 Cannabis sativa HOM05D005688 ORTHO05D006630 1.6e-141 506.5 350 73.7
C09p63990 Brassica napus HOM05D000918 ORTHO05D006630 3.5e-141 505.4 347 69.7
BraA03t09920Z Brassica rapa HOM05D000918 ORTHO05D006630 3.5e-141 505.4 356 70.5
Glyma.02G097000 Glycine max HOM05D005688 ORTHO05D006630 3.5e-141 505.4 361 72.3
Aa31LG3G14570 Aethionema arabicum HOM05D005688 ORTHO05D006630 4.5e-141 505.0 353 71.1
Ca_07133_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 7.7e-141 504.2 361 71.5
Ca_28122_v3 Cicer arietinum L. HOM05D005688 ORTHO05D006630 7.7e-141 504.2 361 71.5
THA.LOC104810209 Tarenaya hassleriana HOM05D005688 ORTHO05D006630 7.7e-141 504.2 351 72.1
Carub.0006s1127 Capsella rubella HOM05D005688 ORTHO05D006630 1.7e-140 503.1 354 70.6
TWI36G1544 Tripterygium wilfordii HOM05D005688 ORTHO05D006630 1.7e-140 503.1 350 74.3
A03p05810 Brassica napus HOM05D000918 ORTHO05D000791 3.8e-140 501.9 356 69.7
BraA10t44572Z Brassica rapa HOM05D005688 ORTHO05D006630 3.8e-140 501.9 355 68.7
Thhalv10013944m.g Eutrema salsugineum HOM05D005688 ORTHO05D006630 6.5e-140 501.1 357 71.1
C03p06760 Brassica napus HOM05D000918 ORTHO05D006630 8.5e-140 500.7 356 69.9
BolC3t13183H Brassica oleracea HOM05D000918 ORTHO05D006630 8.5e-140 500.7 356 69.9
Lalb_Chr10g0092021 Lupinus albus HOM05D005688 ORTHO05D006630 1.1e-139 500.4 360 71.7
CARHR200370 Cardamine hirsuta HOM05D005688 ORTHO05D006630 1.5e-139 500.0 355 70.7
PGR102G0765 Punica granatum HOM05D005688 ORTHO05D006630 7.2e-139 497.7 349 71.3
Sp6g30880 Schrenkiella parvula HOM05D005688 ORTHO05D006630 9.4e-139 497.3 358 70.4
AL6G23700 Arabidopsis lyrata HOM05D005688 ORTHO05D006630 1.2e-138 496.9 359 69.6
A10p25100 Brassica napus HOM05D000918 ORTHO05D006630 1.2e-138 496.9 348 68.4
MELO3C017746.2 Cucumis melo HOM05D005688 ORTHO05D006630 2.7e-138 495.7 359 71.0
Medtr7g022390 Medicago truncatula HOM05D005688 ORTHO05D006630 8.0e-138 494.2 361 70.9
CsaV3_4G002970 Cucumis sativus L. HOM05D005688 ORTHO05D006630 2.3e-137 492.7 361 69.8
arahy.Tifrunner.gnm1.ann1.97E8EB Arachis hypogaea HOM05D005688 ORTHO05D006630 4.0e-137 491.9 375 68.8
arahy.Tifrunner.gnm1.ann1.N9VQT0 Arachis hypogaea HOM05D005688 ORTHO05D006630 4.0e-137 491.9 375 68.8
COL.COLO4_27347 Corchorus olitorius HOM05D005688 ORTHO05D006630 4.0e-137 491.9 353 72.2
Hund06107 Selenicereus undatus HOM05D005688 ORTHO05D006630 4.0e-137 491.9 352 71.3
AT5G13100 Arabidopsis thaliana HOM05D005688 ORTHO05D006630 5.2e-137 491.5 355 69.6
Eucgr.B03525 Eucalyptus grandis HOM05D005688 ORTHO05D006630 2.6e-136 489.2 353 70.3
Sed0014060 Sechium edule HOM05D005688 ORTHO05D006630 3.4e-136 488.8 358 69.3
TPR.G2946 Trifolium pratense HOM05D005688 ORTHO05D006630 9.8e-136 487.3 346 72.3
unitig_26.g10416 Utricularia gibba HOM05D005688 ORTHO05D006630 2.8e-135 485.7 344 71.5
Duzib248G1308 Durio zibethinus HOM05D005688 ORTHO05D006630 3.7e-135 485.3 349 70.8
Lj1g0000862 Lotus japonicus HOM05D005688 ORTHO05D006630 3.7e-135 485.3 368 68.5
Aqoxy3G01629 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 4.8e-135 485.0 350 68.9
Lalb_Chr17g0336391 Lupinus albus HOM05D005688 ORTHO05D006630 4.8e-135 485.0 358 69.8
CAN.G163.3 Capsicum annuum HOM05D005688 ORTHO05D006630 1.4e-134 483.4 317 76.3
Nn3g16394 Nelumbo nucifera HOM05D005688 ORTHO05D006630 4.1e-134 481.9 349 69.3
Sabra03G0123400 Salix brachista HOM05D005688 ORTHO05D006630 1.5e-131 473.4 433 59.6
MBI07_g18747_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 5.5e-131 471.5 352 69.3
PSO017G1106 Papaver somniferum HOM05D005688 ORTHO05D006630 6.1e-130 468.0 356 67.4
BcaB01g05377 Brassica carinata HOM05D005688 ORTHO05D006630 5.2e-129 464.9 357 66.1
AUR62028899 Chenopodium quinoa HOM05D005688 ORTHO05D006630 5.2e-129 464.9 355 67.3
PSO478G0501 Papaver somniferum HOM05D005688 ORTHO05D006630 8.8e-129 464.2 359 66.6
EL10Ac6g13540 Beta vulgaris HOM05D005688 ORTHO05D006630 8.3e-127 457.6 356 66.3
CDE05G3530 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 1.1e-126 457.2 345 66.1
CDE05G2516 Ceratophyllum demersum HOM05D005688 ORTHO05D006630 7.0e-126 454.5 345 66.1
Sabra01G0042800 Salix brachista HOM05D005688 ORTHO05D006630 9.2e-126 454.1 321 73.5
ClCG07G015390 Citrullus lanatus HOM05D005688 ORTHO05D006630 5.0e-124 448.4 326 69.9
Psat3g187080 Pisum sativum HOM05D005688 ORTHO05D006630 1.5e-123 446.8 326 69.9
Sed0011472 Sechium edule HOM05D005688 ORTHO05D006630 3.0e-121 439.1 325 68.0
ATR0582G145 Amborella trichopoda HOM05D005688 ORTHO05D006630 5.7e-120 434.9 343 64.1
Ah.03g135940 Amaranthus hybridus HOM05D005688 ORTHO05D006630 7.0e-118 427.9 361 62.0
Os01g0102500 Oryza sativa ssp. japonica HOM05D005688 ORTHO05D006630 3.1e-113 412.5 340 59.1
Zm00001eb127020 Zea mays HOM05D005688 ORTHO05D006630 2.0e-112 409.8 359 56.5
CiPaw.06G105500 Carya illinoinensis HOM05D005688 ORTHO05D006630 9.8e-112 407.5 283 73.5
Ah.02g130750 Amaranthus hybridus HOM05D005688 ORTHO05D006630 2.9e-111 406.0 349 59.6
SEGI_34677 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 7.0e-110 401.4 318 63.8
SEGI_28374 Sequoiadendron giganteum HOM05D005688 ORTHO05D006630 3.9e-108 395.6 306 63.7
Atru.chr11.2370 Acer truncatum HOM05D005688 ORTHO05D006630 3.3e-107 392.5 279 73.1
HPP92_011533 Vanilla planifolia HOM05D005688 ORTHO05D006630 5.2e-105 385.2 320 62.8
Manes.13G008600 Manihot esculenta HOM05D005688 ORTHO05D006630 1.5e-104 383.6 288 70.1
BcaC04g19152 Brassica carinata HOM05D005688 ORTHO05D006630 3.2e-102 375.9 349 57.0
AUR62005654 Chenopodium quinoa HOM05D005688 ORTHO05D006630 9.2e-102 374.4 228 78.9
AagrBONN_evm.TU.Sc2ySwM_340.298 Anthoceros agrestis HOM05D005688 ORTHO05D006630 8.6e-100 367.9 300 60.0
Cpa.g.sc99.54 Carica papaya HOM05D005688 ORTHO05D006630 4.3e-99 365.5 194 89.2
MBI04_g07882_MAGBIO Magnolia biondii HOM05D005688 ORTHO05D006630 4.3e-99 365.5 293 60.4
Cc11_g17240 Coffea canephora HOM05D005688 ORTHO05D006630 9.5e-99 364.4 194 87.6
GSVIVG01000906001 Vitis vinifera HOM05D005688 ORTHO05D006630 4.7e-98 362.1 194 87.1
HPP92_011539 Vanilla planifolia HOM05D005688 ORTHO05D006630 1.4e-97 360.5 350 55.4
ATR0579G080 Amborella trichopoda HOM05D005688 ORTHO05D006630 4.0e-97 359.0 342 52.6
CBR_g40425 Chara braunii HOM05D005688 ORTHO05D006630 8.9e-97 357.8 281 62.3
Mapoly0015s0197 Marchantia polymorpha HOM05D005688 ORTHO05D006630 1.5e-96 357.1 333 56.2
SMO367G0614 Selaginella moellendorffii HOM05D005688 ORTHO05D006630 1.3e-92 344.0 293 54.9
unitig_8.g2899 Utricularia gibba HOM05D005688 ORTHO05D006630 6.4e-71 271.9 153 82.4
Actinidia30626 Actinidia chinensis HOM05D001095 ORTHO05D000976 1.5e-64 250.8 210 62.9
Actinidia08051 Actinidia chinensis HOM05D005688 ORTHO05D006630 5.8e-64 248.8 126 91.3
Oeu012651.1 Olea europaea HOM05D005688 ORTHO05D006630 5.7e-59 232.3 194 59.8
unitig_8.g2900 Utricularia gibba HOM05D005688 ORTHO05D006630 7.9e-53 211.8 172 64.0
Actinidia34019 Actinidia chinensis HOM05D005688 ORTHO05D006630 9.1e-49 198.4 335 40.6
Nn4g22254 Nelumbo nucifera HOM05D005688 ORTHO05D006630 1.4e-46 191.0 100 88.0
Cpa.g.sc99.53 Carica papaya HOM05D005688 ORTHO05D006630 1.2e-37 161.4 135 62.2
Actinidia08052 Actinidia chinensis HOM05D005688 ORTHO05D006630 3.6e-37 159.8 147 58.5
GSVIVG01010535001 Vitis vinifera HOM05D005688 ORTHO05D006630 3.1e-33 146.7 101 76.2
Aqoxy1G03766 Aquilegia oxysepala HOM05D005688 ORTHO05D006630 1.7e-31 141.0 137 54.7
VMungo1215G2942 Vigna mungo HOM05D005688 ORTHO05D006630 6.1e-29 132.5 82 76.8
BcaB03g14943 Brassica carinata HOM05D005688 ORTHO05D006630 1.5e-27 127.9 73 79.5
BcaB07g33260 Brassica carinata HOM05D005688 ORTHO05D006630 3.3e-27 126.7 73 78.1
VMungo1383G3355 Vigna mungo HOM05D005688 ORTHO05D006630 8.2e-26 122.1 230 40.4
Ah.02g130760 Amaranthus hybridus HOM05D005688 ORTHO05D006630 3.1e-17 93.6 121 44.6
QL06p005212 Quercus lobata HOM05D005688 ORTHO05D006630 1.0e-12 78.6 43 81.4
Actinidia05457 Actinidia chinensis HOM05D005688 ORTHO05D054920 3.7e-10 70.1 71 57.7


User provided reference genes

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