Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A816T56 Lonicera japonica HOM05D003551 ORTHO05D004869 7.9e-40 166.8 91 100.0
Solyc12g099890.2 Solanum lycopersicum HOM05D003551 ORTHO05D004869 8.2e-13 77.0 51 86.3
Potri.008G182900 Populus trichocarpa HOM05D003551 ORTHO05D004869 1.8e-12 75.9 51 76.5
ATR0824G018 Amborella trichopoda HOM05D003551 ORTHO05D004869 3.1e-12 75.1 51 78.4
DCAR_007035 Daucus carota HOM05D003551 ORTHO05D004869 4.1e-12 74.7 51 78.4
Ciclev10030726m.g Citrus clementina HOM05D003551 ORTHO05D004869 6.9e-12 73.9 51 78.4
Sabra08G0139300 Salix brachista HOM05D003551 ORTHO05D004869 6.9e-12 73.9 51 76.5
Hma1.2p1_0079F.1_g041260 Hydrangea macrophylla HOM05D003551 ORTHO05D004869 9.1e-12 73.6 49 77.6
Cc11_g16150 Coffea canephora HOM05D003551 ORTHO05D004869 1.5e-11 72.8 51 76.5
Rhsim12G0038300 Rhododendron simsii HOM05D003551 ORTHO05D004869 2.0e-11 72.4 51 76.5
vmacro01109 Vaccinium macrocarpon HOM05D003551 ORTHO05D004869 2.0e-11 72.4 51 76.5
ECA240G1955 Erigeron canadensis HOM05D003551 ORTHO05D004869 2.6e-11 72.0 51 78.4
Dinv14754 Davidia involucrata HOM05D003551 ORTHO05D004869 4.5e-11 71.2 51 72.5
arahy.Tifrunner.gnm1.ann1.A5BQBU Arachis hypogaea HOM05D003551 ORTHO05D004869 5.9e-11 70.9 51 74.5
PSO017G3678 Papaver somniferum HOM05D003551 ORTHO05D004869 5.9e-11 70.9 51 70.6
PSO478G3924 Papaver somniferum HOM05D003551 ORTHO05D004869 5.9e-11 70.9 51 70.6
Sopen12g034510 Solanum pennellii HOM05D003551 ORTHO05D004869 5.9e-11 70.9 51 80.4
PGSC0003DMG400004723 Solanum tuberosum HOM05D003551 ORTHO05D004869 5.9e-11 70.9 51 80.4
Aqoxy3G00657 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 7.7e-11 70.5 51 72.5
Aqoxy3G01365 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 7.7e-11 70.5 51 72.5
Lj1g0001310 Lotus japonicus HOM05D003551 ORTHO05D004869 7.7e-11 70.5 50 76.0
Prupe.1G240500 Prunus persica HOM05D003551 ORTHO05D004869 1.0e-10 70.1 51 74.5
Atru.chr11.1973 Acer truncatum HOM05D003551 ORTHO05D004869 1.7e-10 69.3 51 74.5
MSTRG.7955 Avicennia marina HOM05D003551 ORTHO05D004869 1.7e-10 69.3 51 70.6
MD16G1105900 Malus domestica HOM05D003551 ORTHO05D004869 1.7e-10 69.3 51 70.6
Oeu028968.1 Olea europaea HOM05D003551 ORTHO05D004869 1.7e-10 69.3 51 72.5
Peaxi162Scf00062g00716 Petunia axillaris HOM05D003551 ORTHO05D004869 1.7e-10 69.3 51 72.5
arahy.Tifrunner.gnm1.ann1.MWLQ6N Arachis hypogaea HOM05D003551 ORTHO05D004869 2.2e-10 68.9 51 72.5
CiPaw.06G064600 Carya illinoinensis HOM05D003551 ORTHO05D004869 2.2e-10 68.9 51 70.6
Eucgr.H02450 Eucalyptus grandis HOM05D003551 ORTHO05D004869 2.2e-10 68.9 51 72.5
Os04g0630000 Oryza sativa ssp. japonica HOM05D003551 ORTHO05D004869 2.2e-10 68.9 51 72.5
PGR119G0237 Punica granatum HOM05D003551 ORTHO05D004869 2.2e-10 68.9 51 78.4
unitig_22.g6420 Utricularia gibba HOM05D003551 ORTHO05D004869 2.2e-10 68.9 51 78.4
AUR62020542 Chenopodium quinoa HOM05D003551 ORTHO05D004869 2.9e-10 68.6 51 72.5
FAN12G2593 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.9e-10 68.6 51 70.6
FAN17G0358 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.9e-10 68.6 51 70.6
FAN22G1040 Fragaria x ananassa HOM05D003551 ORTHO05D004869 2.9e-10 68.6 51 70.6
ClCG03G002050 Citrullus lanatus HOM05D003551 ORTHO05D004869 5.0e-10 67.8 50 72.0
MELO3C022674.2 Cucumis melo HOM05D003551 ORTHO05D004869 5.0e-10 67.8 50 72.0
CsaV3_1G012700 Cucumis sativus L. HOM05D003551 ORTHO05D004869 5.0e-10 67.8 50 72.0
HanXRQChr08g0208471 Helianthus annuus HOM05D003551 ORTHO05D004869 5.0e-10 67.8 51 74.5
Lalb_Chr23g0277731 Lupinus albus HOM05D003551 ORTHO05D004869 5.0e-10 67.8 51 72.5
TWI36G0896 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 5.0e-10 67.8 51 72.5
GSVIVG01000585001 Vitis vinifera HOM05D003551 ORTHO05D004869 5.0e-10 67.8 51 70.6
LjContig00312_ERROPOS870357g0004032 Lotus japonicus HOM05D003551 ORTHO05D004869 6.5e-10 67.4 50 74.0
Hund25033 Selenicereus undatus HOM05D003551 ORTHO05D004869 6.5e-10 67.4 51 72.5
AL1G24840 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 8.5e-10 67.0 51 74.5
Lsat_1_v5_gn_8_153700 Lactuca sativa HOM05D003551 ORTHO05D004869 8.5e-10 67.0 51 70.6
Nitab4.5_0001290g0150 Nicotiana tabacum HOM05D003551 ORTHO05D004869 8.5e-10 67.0 51 74.5
Oeu014152.4 Olea europaea HOM05D003551 ORTHO05D004869 8.5e-10 67.0 51 70.6
Zm00001eb069620 Zea mays HOM05D003551 ORTHO05D004869 8.5e-10 67.0 51 70.6
Phvul.001G256500 Phaseolus vulgaris HOM05D003551 ORTHO05D004869 1.1e-09 66.6 50 70.0
AL7G20520 Arabidopsis lyrata HOM05D003551 ORTHO05D004869 1.4e-09 66.2 51 70.6
AT1G13160 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 1.4e-09 66.2 51 74.5
Carub.0001s1289 Capsella rubella HOM05D003551 ORTHO05D004869 1.4e-09 66.2 51 72.5
RcHm_v2.0_Chr4g0432421 Rosa chinensis HOM05D003551 ORTHO05D004869 1.4e-09 66.2 51 68.6
Sed0023493 Sechium edule HOM05D003551 ORTHO05D004869 1.4e-09 66.2 50 70.0
Nn4g22519 Nelumbo nucifera HOM05D003551 ORTHO05D004869 1.9e-09 65.9 51 68.6
Aa31LG1G1640 Aethionema arabicum HOM05D003551 ORTHO05D004869 2.5e-09 65.5 51 74.5
CARHR068650 Cardamine hirsuta HOM05D003551 ORTHO05D004869 2.5e-09 65.5 51 70.6
Thhalv10005577m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 2.5e-09 65.5 51 70.6
Glyma.11G244500 Glycine max HOM05D003551 ORTHO05D004869 2.5e-09 65.5 50 68.0
SGA_v2.0_scaffold92G28200 Striga asiatica HOM05D003551 ORTHO05D004869 2.5e-09 65.5 51 68.6
HPP92_011125 Vanilla planifolia HOM05D003551 ORTHO05D004869 2.5e-09 65.5 51 70.6
EL10Ac6g14297 Beta vulgaris HOM05D003551 ORTHO05D004869 3.2e-09 65.1 51 68.6
Ca_25128_v3 Cicer arietinum L. HOM05D003551 ORTHO05D004869 4.2e-09 64.7 51 66.7
Lsat_1_v5_gn_8_153780 Lactuca sativa HOM05D003551 ORTHO05D004869 4.2e-09 64.7 51 68.6
QL05p021165 Quercus lobata HOM05D003551 ORTHO05D004869 4.2e-09 64.7 50 68.0
TWI34G1512 Tripterygium wilfordii HOM05D003551 ORTHO05D004869 7.2e-09 63.9 51 68.6
CARHR013530 Cardamine hirsuta HOM05D003551 ORTHO05D004869 9.4e-09 63.5 51 70.6
Thhalv10006828m.g Eutrema salsugineum HOM05D003551 ORTHO05D004869 9.4e-09 63.5 51 68.6
VMungo0540G0742 Vigna mungo HOM05D003551 ORTHO05D004869 9.4e-09 63.5 50 68.0
MELO3C026845.2 Cucumis melo HOM05D003551 ORTHO05D004869 1.2e-08 63.2 50 68.0
Medtr3g086350 Medicago truncatula HOM05D003551 ORTHO05D004869 1.2e-08 63.2 51 70.6
CDE02G2789 Ceratophyllum demersum HOM05D003551 ORTHO05D004869 2.1e-08 62.4 51 66.7
Migut.K00634 Erythranthe guttata HOM05D003551 ORTHO05D004869 2.1e-08 62.4 51 64.7
Gohir.D12G268400 Gossypium hirsutum HOM05D003551 ORTHO05D004869 2.1e-08 62.4 50 64.0
Gorai.008G288600 Gossypium raimondii HOM05D003551 ORTHO05D004869 2.1e-08 62.4 50 64.0
AT4G31520 Arabidopsis thaliana HOM05D003551 ORTHO05D004869 2.7e-08 62.0 51 68.6
Psat2g160640 Pisum sativum HOM05D003551 ORTHO05D004869 2.7e-08 62.0 51 66.7
BraA09t41676Z Brassica rapa HOM05D003551 ORTHO05D004869 3.6e-08 61.6 51 68.6
Gohir.A12G268000 Gossypium hirsutum HOM05D003551 ORTHO05D004869 3.6e-08 61.6 50 64.0
Sp1g11680 Schrenkiella parvula HOM05D003551 ORTHO05D004869 3.6e-08 61.6 51 66.7
BolC8t52212H Brassica oleracea HOM05D003551 ORTHO05D004869 4.7e-08 61.2 51 68.6
Cfa009260 Carpinus fangiana HOM05D003551 ORTHO05D004869 4.7e-08 61.2 58 56.9
C08p46730 Brassica napus HOM05D003551 ORTHO05D004869 6.1e-08 60.8 51 68.6
Manes.12G019500 Manihot esculenta HOM05D003551 ORTHO05D004869 6.1e-08 60.8 51 62.7
A09p63240 Brassica napus HOM05D003551 ORTHO05D004869 7.9e-08 60.5 51 68.6
Carub.0003s0103 Capsella rubella HOM05D003551 ORTHO05D004869 7.9e-08 60.5 51 66.7
CAN.G484.3 Capsicum annuum HOM05D003551 ORTHO05D004869 7.9e-08 60.5 43 79.1
SalBow5G3177 Salvia bowleyana HOM05D003551 ORTHO05D004869 7.9e-08 60.5 51 64.7
SalBow5G3625 Salvia bowleyana HOM05D003551 ORTHO05D004869 7.9e-08 60.5 51 64.7
CANSAT01G3182 Cannabis sativa HOM05D003551 ORTHO05D004869 1.0e-07 60.1 51 62.7
AUR62002805 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.0e-07 60.1 51 60.8
AUR62014112 Chenopodium quinoa HOM05D003551 ORTHO05D004869 1.0e-07 60.1 51 60.8
PSO017G4772 Papaver somniferum HOM05D003551 ORTHO05D004869 1.0e-07 60.1 48 66.7
SalBow2G2049 Salvia bowleyana HOM05D003551 ORTHO05D004869 1.0e-07 60.1 51 60.8
THA.LOC104809236 Tarenaya hassleriana HOM05D003551 ORTHO05D004869 1.0e-07 60.1 51 68.6
PSO063G2135 Papaver somniferum HOM05D003551 ORTHO05D004869 1.8e-07 59.3 48 66.7
arahy.Tifrunner.gnm1.ann1.5TZZ24 Arachis hypogaea HOM05D003551 ORTHO05D004869 5.1e-07 57.8 48 66.7
COL.COLO4_23531 Corchorus olitorius HOM05D003551 ORTHO05D004869 5.1e-07 57.8 50 60.0
Sc04g0005970 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.1e-07 57.8 50 62.0
Sc04g0005980 Simmondsia chinensis HOM05D003551 ORTHO05D004869 5.1e-07 57.8 50 62.0
SEGI_37161 Sequoiadendron giganteum HOM05D003551 ORTHO05D004869 8.8e-07 57.0 51 64.7
TAR374G0642 Trochodendron aralioides HOM05D003551 ORTHO05D004869 1.1e-06 56.6 51 68.6
TPR.G5678 Trifolium pratense HOM05D003551 ORTHO05D004869 1.5e-06 56.2 50 60.0
arahy.Tifrunner.gnm1.ann1.006XS9 Arachis hypogaea HOM05D003551 ORTHO05D004869 2.6e-06 55.5 48 64.6
CSS0025446 Camellia sinensis var. sinensis HOM05D003551 ORTHO05D004869 4.4e-06 54.7 51 64.7
Aqoxy6G03052 Aquilegia oxysepala HOM05D003551 ORTHO05D004869 5.7e-06 54.3 51 62.7
arahy.Tifrunner.gnm1.ann1.X9TT4V Arachis hypogaea HOM05D003551 ORTHO05D004869 5.7e-06 54.3 48 66.7
Pp3c21_560 Physcomitrium patens HOM05D003551 ORTHO05D004869 5.7e-06 54.3 51 60.8
Pp3c21_561 Physcomitrium patens HOM05D003551 ORTHO05D004869 5.7e-06 54.3 51 60.8


User provided reference genes

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