Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A811T72 Lonicera japonica HOM05D005895 ORTHO05D007916 0.0e+00 1173.3 589 100.0
GSVIVG01004086001 Vitis vinifera HOM05D005895 ORTHO05D007916 5.6e-272 940.6 594 79.5
CSS0018548 Camellia sinensis var. sinensis HOM05D005895 ORTHO05D007916 9.9e-269 929.9 593 79.1
MBI10_g00734_MAGBIO Magnolia biondii HOM05D005895 ORTHO05D007916 8.7e-265 916.8 592 77.2
Haze_12237 Corylus avellana HOM05D005895 ORTHO05D007916 2.1e-263 912.1 593 76.7
QL03p058522 Quercus lobata HOM05D005895 ORTHO05D007916 2.1e-263 912.1 590 76.4
Actinidia27801 Actinidia chinensis HOM05D005895 ORTHO05D007916 3.7e-263 911.4 592 78.2
TAR371G0306 Trochodendron aralioides HOM05D005895 ORTHO05D007916 3.7e-263 911.4 593 78.2
Cfa009199 Carpinus fangiana HOM05D005895 ORTHO05D007916 9.0e-262 906.7 592 76.4
Atru.chr11.2133 Acer truncatum HOM05D005895 ORTHO05D007916 3.2e-259 898.3 593 75.9
Atru.chr11.2117 Acer truncatum HOM05D005895 ORTHO05D007916 3.5e-258 894.8 593 75.5
Ciclev10030909m.g Citrus clementina HOM05D005895 ORTHO05D007916 6.0e-258 894.0 592 75.8
vmacro01130 Vaccinium macrocarpon HOM05D005895 ORTHO05D007916 6.0e-258 894.0 629 73.9
CANSAT01G2589 Cannabis sativa HOM05D005895 ORTHO05D007916 2.3e-257 892.1 597 76.2
CiPaw.05G183400 Carya illinoinensis HOM05D005895 ORTHO05D007916 1.9e-256 889.0 592 75.5
DCAR_007061 Daucus carota HOM05D005895 ORTHO05D007916 4.3e-256 887.9 594 76.1
Thecc.02G257400 Theobroma cacao HOM05D005895 ORTHO05D007916 7.4e-256 887.1 591 75.5
Potri.010G044900 Populus trichocarpa HOM05D005895 ORTHO05D007916 4.8e-255 884.4 588 75.2
PGR119G2505 Punica granatum HOM05D005895 ORTHO05D007916 1.4e-254 882.9 593 75.2
Migut.E00194 Erythranthe guttata HOM05D005895 ORTHO05D007916 1.8e-254 882.5 588 76.2
MELO3C011963.2 Cucumis melo HOM05D005895 ORTHO05D007916 3.1e-254 881.7 572 76.6
CAN.G7.20 Capsicum annuum HOM05D005895 ORTHO05D007916 5.3e-254 880.9 590 75.4
COL.COLO4_24246 Corchorus olitorius HOM05D005895 ORTHO05D007916 1.2e-253 879.8 592 74.5
RcHm_v2.0_Chr4g0433361 Rosa chinensis HOM05D005895 ORTHO05D007916 1.2e-253 879.8 592 74.8
TWI36G0590 Tripterygium wilfordii HOM05D005895 ORTHO05D007916 2.0e-253 879.0 603 74.6
Eucgr.H02516 Eucalyptus grandis HOM05D005895 ORTHO05D007916 1.0e-252 876.7 593 75.2
Gorai.012G172600 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.3e-252 876.3 601 72.9
Gohir.A04G136400 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.2e-252 875.5 601 72.7
Sopen04g012770 Solanum pennellii HOM05D005895 ORTHO05D007916 3.8e-252 874.8 590 74.6
Cpa.g.sc33.4 Carica papaya HOM05D005895 ORTHO05D007916 4.9e-252 874.4 581 75.2
Solyc04g025540.3 Solanum lycopersicum HOM05D005895 ORTHO05D007916 4.9e-252 874.4 590 74.6
Sabra10G0023200 Salix brachista HOM05D005895 ORTHO05D007916 6.5e-252 874.0 602 72.9
Prupe.1G247400 Prunus persica HOM05D005895 ORTHO05D007916 1.4e-251 872.8 594 73.6
ECA233G5390 Erigeron canadensis HOM05D005895 ORTHO05D007916 2.5e-251 872.1 540 79.1
CsaV3_5G031240 Cucumis sativus L. HOM05D005895 ORTHO05D007916 9.3e-251 870.2 572 75.3
Sed0023548 Sechium edule HOM05D005895 ORTHO05D007916 6.0e-250 867.5 595 74.5
SalBow8G2958 Salvia bowleyana HOM05D005895 ORTHO05D007916 1.0e-249 866.7 589 73.0
TPR.G34672 Trifolium pratense HOM05D005895 ORTHO05D007916 3.3e-248 861.7 597 72.2
Cc04_g11160 Coffea canephora HOM05D005895 ORTHO05D007916 5.7e-248 860.9 544 77.9
Glyma.08G283100 Glycine max HOM05D005895 ORTHO05D007916 5.3e-246 854.4 544 76.7
HanXRQChr08g0208071 Helianthus annuus HOM05D005895 ORTHO05D007916 1.2e-245 853.2 598 72.2
arahy.Tifrunner.gnm1.ann1.LQ91H7 Arachis hypogaea HOM05D005895 ORTHO05D007916 1.5e-245 852.8 592 72.3
Medtr8g069525 Medicago truncatula HOM05D005895 ORTHO05D007916 2.0e-245 852.4 596 72.1
MD13G1098000 Malus domestica HOM05D005895 ORTHO05D007916 4.5e-245 851.3 596 72.0
Sp5g25720 Schrenkiella parvula HOM05D005895 ORTHO05D007916 5.9e-245 850.9 597 71.2
Hund06020 Selenicereus undatus HOM05D005895 ORTHO05D007916 7.6e-245 850.5 599 72.0
Aqoxy5G03807 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 1.3e-244 849.7 589 74.7
FvH4_4g25910 Fragaria vesca HOM05D005895 ORTHO05D007916 1.7e-244 849.4 544 77.0
Gohir.D04G179500 Gossypium hirsutum HOM05D005895 ORTHO05D007916 2.2e-244 849.0 530 77.9
THA.LOC104822982 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 6.5e-244 847.4 593 72.0
Gorai.005G179700 Gossypium raimondii HOM05D005895 ORTHO05D007916 1.9e-243 845.9 588 73.8
CARHR063780 Cardamine hirsuta HOM05D005895 ORTHO05D007916 2.5e-243 845.5 594 71.4
Thhalv10018314m.g Eutrema salsugineum HOM05D005895 ORTHO05D007916 2.5e-243 845.5 598 71.1
AL2G29960 Arabidopsis lyrata HOM05D005895 ORTHO05D007916 4.2e-243 844.7 597 70.7
Carub.0002s1729 Capsella rubella HOM05D005895 ORTHO05D007916 1.2e-242 843.2 597 70.9
BcaB05g24593 Brassica carinata HOM05D005895 ORTHO05D007916 1.6e-242 842.8 606 70.8
FAN07G1086 Fragaria x ananassa HOM05D005895 ORTHO05D007916 2.1e-242 842.4 544 76.7
Aa31LG4G10380 Aethionema arabicum HOM05D005895 ORTHO05D007916 2.7e-242 842.0 595 71.4
Ah.03g133150 Amaranthus hybridus HOM05D005895 ORTHO05D007916 4.6e-242 841.3 596 71.0
AT1G70570 Arabidopsis thaliana HOM05D005895 ORTHO05D007916 4.6e-242 841.3 597 71.2
BraA02t06722Z Brassica rapa HOM05D005895 ORTHO05D007916 4.6e-242 841.3 599 71.1
MD16G1098900 Malus domestica HOM05D005895 ORTHO05D007916 6.1e-242 840.9 596 70.5
A02p16660 Brassica napus HOM05D005895 ORTHO05D007916 7.9e-242 840.5 599 71.0
Lalb_Chr05g0228401 Lupinus albus HOM05D005895 ORTHO05D007916 3.9e-241 838.2 586 72.9
VMungo0251G0514 Vigna mungo HOM05D005895 ORTHO05D007916 3.9e-241 838.2 593 71.3
FAN12G1268 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.1e-241 837.8 544 76.5
FAN12G2739 Fragaria x ananassa HOM05D005895 ORTHO05D007916 5.1e-241 837.8 543 76.2
Lj4g0008127 Lotus japonicus HOM05D005895 ORTHO05D007916 1.9e-240 835.9 589 71.8
C02p27920 Brassica napus HOM05D005895 ORTHO05D007916 3.3e-240 835.1 598 70.7
BolC2t08837H Brassica oleracea HOM05D005895 ORTHO05D007916 3.3e-240 835.1 598 70.7
AUR62005446 Chenopodium quinoa HOM05D005895 ORTHO05D007916 1.3e-239 833.2 547 75.1
Sc04g0009430 Simmondsia chinensis HOM05D005895 ORTHO05D007916 1.6e-239 832.8 576 72.9
Nitab4.5_0006332g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 2.8e-239 832.0 592 71.3
PSO017G6602 Papaver somniferum HOM05D005895 ORTHO05D007916 8.2e-239 830.5 597 72.0
PSO478G2260 Papaver somniferum HOM05D005895 ORTHO05D007916 8.2e-239 830.5 597 72.4
AUR62024296 Chenopodium quinoa HOM05D005895 ORTHO05D007916 3.1e-238 828.6 593 70.8
FAN17G0264 Fragaria x ananassa HOM05D005895 ORTHO05D007916 3.1e-238 828.6 575 72.5
EL10Ac6g13787 Beta vulgaris HOM05D005895 ORTHO05D007916 3.4e-237 825.1 615 68.8
BcaC03g15207 Brassica carinata HOM05D005895 ORTHO05D007916 1.9e-235 819.3 587 70.7
Nn4g22655 Nelumbo nucifera HOM05D005895 ORTHO05D007916 7.4e-232 807.4 592 70.8
Lsat_1_v5_gn_8_150700 Lactuca sativa HOM05D005895 ORTHO05D007916 1.7e-231 806.2 593 70.3
Aqoxy3G01161 Aquilegia oxysepala HOM05D005895 ORTHO05D007916 3.1e-230 802.0 590 69.0
FAN22G0931 Fragaria x ananassa HOM05D005895 ORTHO05D007916 6.9e-230 800.8 574 71.4
Gohir.D02G159600 Gossypium hirsutum HOM05D005895 ORTHO05D007916 5.9e-229 797.7 589 70.6
HPP92_003081 Vanilla planifolia HOM05D005895 ORTHO05D007916 1.1e-227 793.5 518 75.9
Os02g0131200 Oryza sativa ssp. japonica HOM05D005895 ORTHO05D007916 2.5e-227 792.3 542 73.6
Nitab4.5_0000370g0030 Nicotiana tabacum HOM05D005895 ORTHO05D007916 6.1e-226 787.7 592 68.8
ATR0585G083 Amborella trichopoda HOM05D005895 ORTHO05D007916 3.9e-225 785.0 536 73.9
Manes.12G024300 Manihot esculenta HOM05D005895 ORTHO05D007916 5.7e-224 781.2 513 76.0
ClCG05G025660 Citrullus lanatus HOM05D005895 ORTHO05D007916 1.3e-223 780.0 592 68.9
Zm00001eb231230 Zea mays HOM05D005895 ORTHO05D007916 3.7e-223 778.5 550 72.0
Phvul.003G063900 Phaseolus vulgaris HOM05D005895 ORTHO05D007916 1.4e-217 760.0 461 78.1
Manes.13G025800 Manihot esculenta HOM05D005895 ORTHO05D007916 8.8e-217 757.3 515 74.6
MSTRG.2417 Avicennia marina HOM05D005895 ORTHO05D007916 2.2e-215 752.7 445 81.8
Oeu059911.1 Olea europaea HOM05D005895 ORTHO05D007916 2.2e-212 742.7 571 69.2
arahy.Tifrunner.gnm1.ann1.0I87EX Arachis hypogaea HOM05D005895 ORTHO05D007916 2.7e-210 735.7 521 70.8
Psat0s3772g0040 Pisum sativum HOM05D005895 ORTHO05D007916 1.0e-209 733.8 522 70.5
Ca_22578_v3 Cicer arietinum L. HOM05D005895 ORTHO05D007916 9.1e-206 720.7 476 73.5
Sed0009772 Sechium edule HOM05D005895 ORTHO05D007916 2.8e-202 709.1 458 77.3
unitig_52.g17177 Utricularia gibba HOM05D005895 ORTHO05D007916 2.8e-202 709.1 520 68.7
Gohir.A03G136300 Gossypium hirsutum HOM05D005895 ORTHO05D007916 1.8e-201 706.4 496 71.0
THA.LOC104818151 Tarenaya hassleriana HOM05D005895 ORTHO05D007916 5.7e-200 701.4 497 71.8
Duzib251G0200 Durio zibethinus HOM05D005895 ORTHO05D007916 3.6e-194 682.2 591 62.1
Mapoly0129s0050 Marchantia polymorpha HOM05D005895 ORTHO05D007916 3.6e-194 682.2 508 66.3
Zm00001eb209010 Zea mays HOM05D005895 ORTHO05D007916 1.4e-190 670.2 552 63.6
Pp3c12_14340 Physcomitrium patens HOM05D005895 ORTHO05D007916 2.4e-190 669.5 505 66.5
Peaxi162Scf01242g00143 Petunia axillaris HOM05D005895 ORTHO05D007916 3.1e-185 652.5 444 73.2
SMO119G0060 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 3.1e-177 625.9 520 61.9
Dinv24803 Davidia involucrata HOM05D005895 ORTHO05D007916 1.3e-167 594.0 389 78.1
AagrBONN_evm.TU.Sc2ySwM_368.1304 Anthoceros agrestis HOM05D005895 ORTHO05D007916 1.3e-164 583.9 447 63.8
Pp3c10_19590 Physcomitrium patens HOM05D005895 ORTHO05D007916 1.7e-122 444.1 346 63.3
SHI17741 Sapria himalayana HOM05D000002 ORTHO05D000001 2.1e-93 347.4 253 67.2
FAN18G3006 Fragaria x ananassa HOM05D005895 ORTHO05D007916 1.7e-90 337.8 200 79.5
CBR_g37586 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-63 247.7 274 47.8
CBR_g37584 Chara braunii HOM05D000019 ORTHO05D000048 4.7e-53 213.4 202 52.0
SEGI_05407 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 1.4e-52 211.8 141 73.0
Peaxi162Scf02256g00001 Petunia axillaris HOM05D005895 ORTHO05D007916 2.0e-51 208.0 143 71.3
SEGI_24305 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 4.6e-40 170.2 100 77.0
BcaB08g34808 Brassica carinata HOM05D005895 ORTHO05D007916 1.2e-35 155.6 100 70.0
SEGI_08481 Sequoiadendron giganteum HOM05D005895 ORTHO05D007916 2.9e-34 151.0 101 68.3
DCAR_028023 Daucus carota HOM05D005895 ORTHO05D007916 6.9e-28 129.8 109 63.3
SMO163G0072 Selaginella moellendorffii HOM05D005895 ORTHO05D007916 3.2e-25 120.9 174 43.1
Rhsim12G0041200 Rhododendron simsii HOM05D005895 ORTHO05D007916 1.0e-23 115.9 74 71.6
Ah.07g201790 Amaranthus hybridus HOM05D005895 ORTHO05D007916 1.9e-22 111.7 66 75.8
BcaB05g24594 Brassica carinata HOM05D005895 ORTHO05D012801 1.3e-21 109.0 104 53.8
DCAR_029453 Daucus carota HOM05D005895 ORTHO05D007916 2.6e-19 101.3 68 75.0
A02p16670 Brassica napus HOM05D005895 ORTHO05D012801 6.5e-18 96.7 65 67.7
BraA02t06723Z Brassica rapa HOM05D005895 ORTHO05D012801 6.5e-18 96.7 65 67.7
CSS0038190 Camellia sinensis var. sinensis HOM05D033929 ORTHO05D026310 8.4e-18 96.3 117 53.8
C02p27930 Brassica napus HOM05D005895 ORTHO05D012801 1.2e-16 92.4 67 64.2
BolC2t08838H Brassica oleracea HOM05D005895 ORTHO05D012801 1.2e-16 92.4 67 64.2
Gorai.012G172500 Gossypium raimondii HOM05D005895 ORTHO05D007916 4.1e-12 77.4 54 70.4
Actinidia08142 Actinidia chinensis HOM05D005895 ORTHO05D026310 3.9e-07 60.8 102 45.1
HanXRQChr09g0254931 Helianthus annuus HOM05D003318 ORTHO05D004544 1.1e-06 59.3 336 22.3
VMungo1309G2893 Vigna mungo HOM05D003318 ORTHO05D004544 4.3e-06 57.4 394 22.8


User provided reference genes

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