Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lj6A795T74 Lonicera japonica HOM05D006025 ORTHO05D008547 9.8e-178 626.7 322 100.0
Manes.05G096000 Manihot esculenta HOM05D006025 ORTHO05D008547 1.3e-105 387.1 294 70.4
Prupe.1G267200 Prunus persica HOM05D006025 ORTHO05D008547 2.9e-105 386.0 299 71.2
Actinidia31175 Actinidia chinensis HOM05D006025 ORTHO05D008547 5.0e-105 385.2 322 68.0
Dinv34195 Davidia involucrata HOM05D006025 ORTHO05D008547 1.1e-104 384.0 332 69.3
Ciclev10032129m.g Citrus clementina HOM05D006025 ORTHO05D008547 5.5e-104 381.7 301 67.1
GSVIVG01020079001 Vitis vinifera HOM05D006025 ORTHO05D008547 9.4e-104 380.9 281 73.7
FAN12G1990 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.7e-103 379.4 303 68.3
MD13G1079600 Malus domestica HOM05D006025 ORTHO05D008547 1.4e-102 377.1 308 69.2
QL03p065944 Quercus lobata HOM05D006025 ORTHO05D008547 1.4e-102 377.1 317 67.8
Nitab4.5_0000679g0100 Nicotiana tabacum HOM05D006025 ORTHO05D008547 1.8e-102 376.7 263 75.3
Rhsim12G0129700 Rhododendron simsii HOM05D006025 ORTHO05D008547 1.8e-102 376.7 327 66.1
FvH4_4g32070 Fragaria vesca HOM05D006025 ORTHO05D008547 1.5e-101 373.6 307 67.4
CsaV3_5G032300 Cucumis sativus L. HOM05D006025 ORTHO05D008547 4.4e-101 372.1 304 68.1
MD16G1079500 Malus domestica HOM05D006025 ORTHO05D008547 4.4e-101 372.1 322 64.0
MELO3C012062.2 Cucumis melo HOM05D006025 ORTHO05D008547 2.2e-100 369.8 302 67.5
Migut.L01348 Erythranthe guttata HOM05D006025 ORTHO05D008547 2.8e-100 369.4 265 72.1
FAN22G0508 Fragaria x ananassa HOM05D006025 ORTHO05D008547 2.8e-100 369.4 307 66.8
CAN.G27.7 Capsicum annuum HOM05D006025 ORTHO05D008547 3.7e-100 369.0 327 62.1
COL.COLO4_36182 Corchorus olitorius HOM05D006025 ORTHO05D008547 3.7e-100 369.0 260 74.2
FAN07G0827 Fragaria x ananassa HOM05D006025 ORTHO05D008547 3.7e-100 369.0 309 66.3
Atru.chr11.1861 Acer truncatum HOM05D006025 ORTHO05D008547 6.3e-100 368.2 285 70.5
SalBow8G3437 Salvia bowleyana HOM05D006025 ORTHO05D008547 1.1e-99 367.5 315 66.3
Thecc.02G232800 Theobroma cacao HOM05D006025 ORTHO05D008547 1.1e-99 367.5 259 73.4
Cc11_g13550 Coffea canephora HOM05D006025 ORTHO05D008547 1.4e-99 367.1 321 65.1
PGR119G0173 Punica granatum HOM05D006025 ORTHO05D008547 1.4e-99 367.1 320 65.3
Cfa009042 Carpinus fangiana HOM05D006025 ORTHO05D008547 7.0e-99 364.8 321 65.1
Migut.E00118 Erythranthe guttata HOM05D006025 ORTHO05D008547 7.0e-99 364.8 325 62.5
Sabra10G0030400 Salix brachista HOM05D006025 ORTHO05D008547 7.0e-99 364.8 254 74.0
ClCG05G024630 Citrullus lanatus HOM05D006025 ORTHO05D008547 1.2e-98 364.0 300 68.0
RcHm_v2.0_Chr4g0440761 Rosa chinensis HOM05D006025 ORTHO05D008547 1.2e-98 364.0 266 71.4
Medtr5g037600 Medicago truncatula HOM05D006025 ORTHO05D008547 2.0e-98 363.2 284 67.3
Sed0022227 Sechium edule HOM05D006025 ORTHO05D008547 3.5e-98 362.5 248 76.6
CiPaw.05G140400 Carya illinoinensis HOM05D006025 ORTHO05D008547 4.5e-98 362.1 293 68.3
Glyma.01G040500 Glycine max HOM05D006025 ORTHO05D008547 5.9e-98 361.7 306 63.4
Phvul.002G080900 Phaseolus vulgaris HOM05D006025 ORTHO05D008547 1.0e-97 360.9 306 63.7
Potri.010G034400 Populus trichocarpa HOM05D006025 ORTHO05D008547 1.3e-97 360.5 252 74.2
CANSAT78G1034 Cannabis sativa HOM05D006025 ORTHO05D008547 2.9e-97 359.4 270 68.9
Sc11g0001660 Simmondsia chinensis HOM05D006025 ORTHO05D008547 5.0e-97 358.6 324 62.0
vmacro16324 Vaccinium macrocarpon HOM05D006025 ORTHO05D008547 6.5e-97 358.2 370 58.4
TWI18G0579 Tripterygium wilfordii HOM05D006025 ORTHO05D008547 8.5e-97 357.8 254 73.2
Lj2g0002167 Lotus japonicus HOM05D006025 ORTHO05D008547 7.2e-96 354.8 260 71.5
EL10Ac6g13142 Beta vulgaris HOM05D006025 ORTHO05D008547 1.2e-95 354.0 263 72.2
AL5G11850 Arabidopsis lyrata HOM05D006025 ORTHO05D008547 1.6e-95 353.6 251 71.7
Gohir.A05G321100 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.6e-95 353.6 258 70.2
Hund25274 Selenicereus undatus HOM05D006025 ORTHO05D008547 2.1e-95 353.2 264 70.8
AT2G02590 Arabidopsis thaliana HOM05D006025 ORTHO05D008547 4.7e-95 352.1 251 71.3
Gorai.009G347000 Gossypium raimondii HOM05D006025 ORTHO05D008547 4.7e-95 352.1 259 70.3
Carub.0005s0158 Capsella rubella HOM05D006025 ORTHO05D008547 6.1e-95 351.7 251 71.7
VMungo1215G1908 Vigna mungo HOM05D006025 ORTHO05D008547 8.0e-95 351.3 307 61.9
Sopen05g002930 Solanum pennellii HOM05D006025 ORTHO05D008547 8.8e-94 347.8 287 66.9
MSTRG.7831 Avicennia marina HOM05D006025 ORTHO05D008547 2.0e-93 346.7 302 63.6
Lalb_Chr05g0217521 Lupinus albus HOM05D006025 ORTHO05D008547 2.0e-93 346.7 255 69.0
TAR481G0011 Trochodendron aralioides HOM05D006025 ORTHO05D008547 5.7e-93 345.1 230 73.5
Gohir.D05G323300 Gossypium hirsutum HOM05D006025 ORTHO05D008547 1.3e-92 344.0 251 69.7
TPR.G26717 Trifolium pratense HOM05D006025 ORTHO05D008547 1.3e-92 344.0 254 70.1
DCAR_024490 Daucus carota HOM05D006025 ORTHO05D008547 1.7e-92 343.6 206 85.9
Lsat_1_v5_gn_3_49700 Lactuca sativa HOM05D006025 ORTHO05D008547 2.8e-92 342.8 327 60.9
Ca_04692_v3 Cicer arietinum L. HOM05D006025 ORTHO05D008547 3.7e-92 342.4 264 68.6
Thhalv10004613m.g Eutrema salsugineum HOM05D006025 ORTHO05D008547 3.7e-92 342.4 251 71.3
Duzib268G1145 Durio zibethinus HOM05D006025 ORTHO05D008547 4.8e-92 342.0 244 72.1
Sp2g13810 Schrenkiella parvula HOM05D006025 ORTHO05D008547 4.8e-92 342.0 251 72.1
HanXRQChr15g0478181 Helianthus annuus HOM05D006025 ORTHO05D008547 8.2e-92 341.3 325 59.7
BcaC06g31223 Brassica carinata HOM05D006025 ORTHO05D008547 1.1e-91 340.9 251 70.5
Cpa.g.sc73.14 Carica papaya HOM05D006025 ORTHO05D008547 1.1e-91 340.9 299 62.9
PGSC0003DMG400017619 Solanum tuberosum HOM05D006025 ORTHO05D008547 1.1e-91 340.9 321 61.1
BolC7t43841H Brassica oleracea HOM05D006025 ORTHO05D008547 3.1e-91 339.3 253 71.5
Nn4g23031 Nelumbo nucifera HOM05D006025 ORTHO05D008547 4.1e-91 339.0 331 58.0
Psat2g115440 Pisum sativum HOM05D006025 ORTHO05D008547 7.0e-91 338.2 285 64.6
Oeu044566.1 Olea europaea HOM05D006025 ORTHO05D008547 9.1e-91 337.8 301 63.8
THA.LOC104805137 Tarenaya hassleriana HOM05D000131 ORTHO05D000086 1.2e-90 337.4 236 75.0
BraA09t37996Z Brassica rapa HOM05D006025 ORTHO05D008547 4.5e-90 335.5 249 69.9
BcaC06g34048 Brassica carinata HOM05D006025 ORTHO05D008547 5.9e-90 335.1 243 72.4
A06p43550 Brassica napus HOM05D006025 ORTHO05D008547 5.9e-90 335.1 264 68.6
C07p33300 Brassica napus HOM05D006025 ORTHO05D008547 5.9e-90 335.1 243 72.4
AUR62026262 Chenopodium quinoa HOM05D006025 ORTHO05D008547 5.9e-90 335.1 206 82.0
arahy.Tifrunner.gnm1.ann1.1ZL8TB Arachis hypogaea HOM05D006025 ORTHO05D008547 7.7e-90 334.7 278 64.4
BraA06t27240Z Brassica rapa HOM05D006025 ORTHO05D008547 1.7e-89 333.6 264 68.6
Aa31LG2G7560 Aethionema arabicum HOM05D006025 ORTHO05D008547 2.9e-89 332.8 311 61.1
A09p23920 Brassica napus HOM05D006025 ORTHO05D008547 2.9e-89 332.8 252 68.7
Ah.03g132040 Amaranthus hybridus HOM05D006025 ORTHO05D008547 6.5e-89 331.6 231 74.5
arahy.Tifrunner.gnm1.ann1.V5YJYF Arachis hypogaea HOM05D006025 ORTHO05D008547 1.1e-88 330.9 278 63.3
CARHR145110 Cardamine hirsuta HOM05D006025 ORTHO05D008547 5.5e-88 328.6 268 64.6
C09p30780 Brassica napus HOM05D006025 ORTHO05D008547 9.4e-88 327.8 249 69.5
BolC9t55941H Brassica oleracea HOM05D006025 ORTHO05D008547 1.6e-87 327.0 245 70.2
HanXRQChr17g0544581 Helianthus annuus HOM05D006025 ORTHO05D008547 2.7e-87 326.2 335 58.2
CSS0050443 Camellia sinensis var. sinensis HOM05D006025 ORTHO05D008547 8.0e-87 324.7 198 82.3
BcaC04g21520 Brassica carinata HOM05D006025 ORTHO05D008547 2.3e-86 323.2 239 70.7
AUR62026454 Chenopodium quinoa HOM05D006025 ORTHO05D008547 6.8e-86 321.6 206 81.1
Nitab4.5_0002969g0040 Nicotiana tabacum HOM05D006025 ORTHO05D008547 8.8e-86 321.2 250 68.8
Peaxi162Scf00209g00517 Petunia axillaris HOM05D006025 ORTHO05D008547 2.6e-85 319.7 278 63.7
Aqoxy3G00786 Aquilegia oxysepala HOM05D006025 ORTHO05D008547 7.5e-85 318.2 232 71.6
Haze_12072 Corylus avellana HOM05D006025 ORTHO05D008547 1.3e-84 317.4 273 64.8
MBI04_g22196_MAGBIO Magnolia biondii HOM05D006025 ORTHO05D008547 2.2e-84 316.6 197 79.2
PSO478G1322 Papaver somniferum HOM05D006025 ORTHO05D008547 3.7e-84 315.8 307 58.6
ATR0665G167 Amborella trichopoda HOM05D006025 ORTHO05D008547 1.4e-83 313.9 246 66.3
Eucgr.B02589 Eucalyptus grandis HOM05D006025 ORTHO05D008547 3.1e-83 312.8 293 61.1
BcaB07g30697 Brassica carinata HOM05D006025 ORTHO05D008547 4.1e-83 312.4 290 61.7
ECA246G2177 Erigeron canadensis HOM05D006025 ORTHO05D008547 2.0e-82 310.1 198 79.3
SalBow2G1916 Salvia bowleyana HOM05D006025 ORTHO05D008547 3.5e-82 309.3 284 58.1
SGA_v2.0_scaffold87G26972 Striga asiatica HOM05D006025 ORTHO05D008547 4.5e-82 308.9 316 55.7
Os03g0800500 Oryza sativa ssp. japonica HOM05D006025 ORTHO05D008547 2.3e-78 296.6 205 72.7
unitig_62.g23684 Utricularia gibba HOM05D006025 ORTHO05D008547 1.5e-77 293.9 276 58.7
SEGI_16485 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 1.2e-69 267.7 222 59.9
Zm00001eb212770 Zea mays HOM05D006025 ORTHO05D008547 6.4e-68 261.9 196 68.9
AagrBONN_evm.TU.Sc2ySwM_117.678 Anthoceros agrestis HOM05D006025 ORTHO05D008547 2.8e-63 246.5 195 62.6
SMO147G0037 Selaginella moellendorffii HOM05D006025 ORTHO05D008547 1.2e-61 241.1 208 57.7
Mapoly0001s0092 Marchantia polymorpha HOM05D006025 ORTHO05D008547 4.4e-61 239.2 217 56.2
CBR_g39595 Chara braunii HOM05D006025 ORTHO05D008547 1.4e-59 234.2 226 51.3
Pp3c22_2360 Physcomitrium patens HOM05D006025 ORTHO05D008547 4.0e-54 216.1 220 51.8
HPP92_018837 Vanilla planifolia HOM05D006025 ORTHO05D008547 1.2e-53 214.5 150 70.7
CDE07G0470 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 7.5e-53 211.8 178 57.9
Glyma.02G024100 Glycine max HOM05D006025 ORTHO05D008547 1.6e-34 151.0 187 49.2
CDE06G2488 Ceratophyllum demersum HOM05D006025 ORTHO05D008547 4.6e-34 149.4 175 46.3
SEGI_34054 Sequoiadendron giganteum HOM05D006025 ORTHO05D008547 7.8e-34 148.7 107 70.1
Solyc05g006965.1 Solanum lycopersicum HOM05D006025 ORTHO05D008547 2.4e-30 137.1 177 49.2
Hma1.2p1_0513F.1_g169540 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 1.1e-19 101.7 75 73.3
Hma1.2p1_0808F.1_g221580 Hydrangea macrophylla HOM05D006025 ORTHO05D008547 7.1e-19 99.0 75 69.3
DCAR_001229 Daucus carota HOM05D006025 ORTHO05D008547 1.7e-12 77.8 50 82.0
Zm00001eb151370 Zea mays HOM05D006025 ORTHO05D443914 2.7e-10 70.5 63 61.9
Dinv16285 Davidia involucrata HOM05D000027 ORTHO05D000500 1.9e-08 64.3 108 44.4


User provided reference genes

Program Settings